Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15145

Experiment: root sample 5; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS15135 and ABZR87_RS15140 are separated by 99 nucleotidesABZR87_RS15140 and ABZR87_RS15145 are separated by 13 nucleotidesABZR87_RS15145 and ABZR87_RS15150 are separated by 92 nucleotidesABZR87_RS15150 and ABZR87_RS15155 are separated by 304 nucleotidesABZR87_RS15155 and ABZR87_RS15160 overlap by 4 nucleotides ABZR87_RS15135: ABZR87_RS15135 - hypothetical protein, at 3,197,000 to 3,197,284 _RS15135 ABZR87_RS15140: ABZR87_RS15140 - transglutaminase family protein, at 3,197,384 to 3,198,244 _RS15140 ABZR87_RS15145: ABZR87_RS15145 - hypothetical protein, at 3,198,258 to 3,198,521 _RS15145 ABZR87_RS15150: ABZR87_RS15150 - cold shock domain-containing protein, at 3,198,614 to 3,198,823 _RS15150 ABZR87_RS15155: ABZR87_RS15155 - phage tail protein, at 3,199,128 to 3,199,421 _RS15155 ABZR87_RS15160: ABZR87_RS15160 - phage virion morphogenesis protein, at 3,199,418 to 3,199,804 _RS15160 Position (kb) 3198 3199Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3197.282 kb on + strandat 3197.294 kb on + strandat 3197.294 kb on + strandat 3197.295 kb on - strandat 3197.295 kb on - strandat 3197.295 kb on - strandat 3197.399 kb on + strandat 3197.400 kb on - strandat 3197.400 kb on - strandat 3197.400 kb on - strandat 3197.412 kb on + strandat 3197.413 kb on - strandat 3197.413 kb on - strandat 3197.418 kb on - strandat 3197.418 kb on - strandat 3197.565 kb on + strand, within ABZR87_RS15140at 3197.565 kb on + strand, within ABZR87_RS15140at 3197.565 kb on + strand, within ABZR87_RS15140at 3197.565 kb on + strand, within ABZR87_RS15140at 3197.566 kb on - strand, within ABZR87_RS15140at 3197.566 kb on - strand, within ABZR87_RS15140at 3197.566 kb on - strand, within ABZR87_RS15140at 3197.566 kb on - strand, within ABZR87_RS15140at 3197.566 kb on - strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.603 kb on + strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.604 kb on - strand, within ABZR87_RS15140at 3197.607 kb on + strand, within ABZR87_RS15140at 3197.607 kb on + strand, within ABZR87_RS15140at 3197.607 kb on + strand, within ABZR87_RS15140at 3197.607 kb on + strand, within ABZR87_RS15140at 3197.608 kb on - strand, within ABZR87_RS15140at 3197.608 kb on - strand, within ABZR87_RS15140at 3197.608 kb on - strand, within ABZR87_RS15140at 3197.689 kb on + strand, within ABZR87_RS15140at 3197.689 kb on + strand, within ABZR87_RS15140at 3197.689 kb on + strand, within ABZR87_RS15140at 3197.689 kb on + strand, within ABZR87_RS15140at 3197.690 kb on - strand, within ABZR87_RS15140at 3197.777 kb on + strand, within ABZR87_RS15140at 3197.778 kb on - strand, within ABZR87_RS15140at 3197.817 kb on - strand, within ABZR87_RS15140at 3197.820 kb on + strand, within ABZR87_RS15140at 3197.820 kb on + strand, within ABZR87_RS15140at 3197.820 kb on + strand, within ABZR87_RS15140at 3197.820 kb on + strand, within ABZR87_RS15140at 3197.820 kb on + strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.821 kb on - strand, within ABZR87_RS15140at 3197.889 kb on + strand, within ABZR87_RS15140at 3197.889 kb on + strand, within ABZR87_RS15140at 3197.889 kb on + strand, within ABZR87_RS15140at 3197.890 kb on - strand, within ABZR87_RS15140at 3197.890 kb on - strand, within ABZR87_RS15140at 3197.890 kb on - strand, within ABZR87_RS15140at 3197.890 kb on - strand, within ABZR87_RS15140at 3197.890 kb on - strand, within ABZR87_RS15140at 3197.890 kb on - strand, within ABZR87_RS15140at 3197.900 kb on + strand, within ABZR87_RS15140at 3197.900 kb on + strand, within ABZR87_RS15140at 3197.900 kb on + strand, within ABZR87_RS15140at 3197.900 kb on + strand, within ABZR87_RS15140at 3197.901 kb on - strand, within ABZR87_RS15140at 3197.901 kb on - strand, within ABZR87_RS15140at 3197.901 kb on - strand, within ABZR87_RS15140at 3197.901 kb on - strand, within ABZR87_RS15140at 3197.934 kb on + strand, within ABZR87_RS15140at 3197.934 kb on + strand, within ABZR87_RS15140at 3197.934 kb on + strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.935 kb on - strand, within ABZR87_RS15140at 3197.938 kb on + strand, within ABZR87_RS15140at 3198.023 kb on + strand, within ABZR87_RS15140at 3198.023 kb on + strand, within ABZR87_RS15140at 3198.024 kb on - strand, within ABZR87_RS15140at 3198.242 kb on + strandat 3198.242 kb on + strandat 3198.242 kb on + strandat 3198.243 kb on - strandat 3198.243 kb on - strandat 3198.247 kb on + strandat 3198.247 kb on + strandat 3198.247 kb on + strandat 3198.248 kb on - strandat 3198.248 kb on - strandat 3198.250 kb on + strandat 3198.250 kb on + strandat 3198.250 kb on + strandat 3198.250 kb on + strandat 3198.250 kb on + strandat 3198.250 kb on + strandat 3198.251 kb on - strandat 3198.251 kb on - strandat 3198.251 kb on - strandat 3198.251 kb on - strandat 3198.251 kb on - strandat 3198.251 kb on - strandat 3198.251 kb on - strandat 3198.399 kb on + strand, within ABZR87_RS15145at 3198.399 kb on + strand, within ABZR87_RS15145at 3198.399 kb on + strand, within ABZR87_RS15145at 3198.400 kb on - strand, within ABZR87_RS15145at 3198.499 kb on + strandat 3198.500 kb on - strandat 3198.509 kb on + strandat 3198.521 kb on + strandat 3198.521 kb on + strandat 3198.521 kb on + strandat 3198.521 kb on + strandat 3198.522 kb on - strandat 3198.522 kb on - strandat 3198.522 kb on - strandat 3198.566 kb on + strandat 3198.567 kb on - strandat 3198.567 kb on - strandat 3198.588 kb on + strandat 3198.640 kb on + strand, within ABZR87_RS15150at 3198.656 kb on + strand, within ABZR87_RS15150at 3198.656 kb on + strand, within ABZR87_RS15150at 3198.657 kb on - strand, within ABZR87_RS15150at 3198.657 kb on - strand, within ABZR87_RS15150at 3198.733 kb on - strand, within ABZR87_RS15150at 3198.817 kb on + strandat 3198.817 kb on + strandat 3198.818 kb on - strandat 3198.818 kb on - strandat 3198.835 kb on + strandat 3198.836 kb on - strandat 3198.836 kb on - strandat 3198.960 kb on + strandat 3199.006 kb on + strandat 3199.006 kb on + strandat 3199.006 kb on + strandat 3199.006 kb on + strandat 3199.007 kb on - strandat 3199.007 kb on - strandat 3199.007 kb on - strandat 3199.007 kb on - strandat 3199.036 kb on - strandat 3199.156 kb on - strandat 3199.446 kb on - strandat 3199.446 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
remove
3,197,282 + -1.4
3,197,294 + +1.9
3,197,294 + -1.7
3,197,295 - -0.0
3,197,295 - -0.8
3,197,295 - -0.2
3,197,399 + +2.2
3,197,400 - -0.2
3,197,400 - -0.8
3,197,400 - +0.1
3,197,412 + -0.8
3,197,413 - -1.0
3,197,413 - +1.6
3,197,418 - -0.4
3,197,418 - +0.7
3,197,565 + ABZR87_RS15140 0.21 -0.8
3,197,565 + ABZR87_RS15140 0.21 +0.4
3,197,565 + ABZR87_RS15140 0.21 -0.9
3,197,565 + ABZR87_RS15140 0.21 -0.7
3,197,566 - ABZR87_RS15140 0.21 -2.3
3,197,566 - ABZR87_RS15140 0.21 -0.5
3,197,566 - ABZR87_RS15140 0.21 -0.8
3,197,566 - ABZR87_RS15140 0.21 +0.1
3,197,566 - ABZR87_RS15140 0.21 -1.6
3,197,603 + ABZR87_RS15140 0.25 +0.4
3,197,603 + ABZR87_RS15140 0.25 +2.4
3,197,603 + ABZR87_RS15140 0.25 +0.1
3,197,603 + ABZR87_RS15140 0.25 +0.1
3,197,603 + ABZR87_RS15140 0.25 -1.8
3,197,603 + ABZR87_RS15140 0.25 -0.3
3,197,603 + ABZR87_RS15140 0.25 +2.2
3,197,603 + ABZR87_RS15140 0.25 +0.5
3,197,603 + ABZR87_RS15140 0.25 +1.3
3,197,603 + ABZR87_RS15140 0.25 -1.8
3,197,603 + ABZR87_RS15140 0.25 +1.6
3,197,603 + ABZR87_RS15140 0.25 -0.2
3,197,603 + ABZR87_RS15140 0.25 +0.2
3,197,604 - ABZR87_RS15140 0.26 +1.1
3,197,604 - ABZR87_RS15140 0.26 +1.0
3,197,604 - ABZR87_RS15140 0.26 +0.4
3,197,604 - ABZR87_RS15140 0.26 +0.1
3,197,604 - ABZR87_RS15140 0.26 +2.0
3,197,604 - ABZR87_RS15140 0.26 -0.2
3,197,604 - ABZR87_RS15140 0.26 +0.6
3,197,604 - ABZR87_RS15140 0.26 +1.4
3,197,604 - ABZR87_RS15140 0.26 -1.8
3,197,604 - ABZR87_RS15140 0.26 -1.0
3,197,607 + ABZR87_RS15140 0.26 +0.4
3,197,607 + ABZR87_RS15140 0.26 +1.2
3,197,607 + ABZR87_RS15140 0.26 -0.2
3,197,607 + ABZR87_RS15140 0.26 +0.5
3,197,608 - ABZR87_RS15140 0.26 +0.3
3,197,608 - ABZR87_RS15140 0.26 +3.4
3,197,608 - ABZR87_RS15140 0.26 -0.6
3,197,689 + ABZR87_RS15140 0.35 -0.5
3,197,689 + ABZR87_RS15140 0.35 +0.8
3,197,689 + ABZR87_RS15140 0.35 +0.9
3,197,689 + ABZR87_RS15140 0.35 -0.4
3,197,690 - ABZR87_RS15140 0.36 +0.8
3,197,777 + ABZR87_RS15140 0.46 -0.9
3,197,778 - ABZR87_RS15140 0.46 -0.8
3,197,817 - ABZR87_RS15140 0.50 +1.6
3,197,820 + ABZR87_RS15140 0.51 +0.7
3,197,820 + ABZR87_RS15140 0.51 -0.0
3,197,820 + ABZR87_RS15140 0.51 -0.5
3,197,820 + ABZR87_RS15140 0.51 -0.0
3,197,820 + ABZR87_RS15140 0.51 -2.1
3,197,821 - ABZR87_RS15140 0.51 -1.4
3,197,821 - ABZR87_RS15140 0.51 +0.9
3,197,821 - ABZR87_RS15140 0.51 -0.6
3,197,821 - ABZR87_RS15140 0.51 -2.1
3,197,821 - ABZR87_RS15140 0.51 +1.2
3,197,821 - ABZR87_RS15140 0.51 -0.2
3,197,821 - ABZR87_RS15140 0.51 +0.2
3,197,821 - ABZR87_RS15140 0.51 +0.6
3,197,821 - ABZR87_RS15140 0.51 -1.3
3,197,821 - ABZR87_RS15140 0.51 +0.8
3,197,821 - ABZR87_RS15140 0.51 -1.7
3,197,821 - ABZR87_RS15140 0.51 +1.0
3,197,821 - ABZR87_RS15140 0.51 -0.5
3,197,889 + ABZR87_RS15140 0.59 -1.3
3,197,889 + ABZR87_RS15140 0.59 +0.6
3,197,889 + ABZR87_RS15140 0.59 -0.7
3,197,890 - ABZR87_RS15140 0.59 +1.2
3,197,890 - ABZR87_RS15140 0.59 +1.7
3,197,890 - ABZR87_RS15140 0.59 -0.6
3,197,890 - ABZR87_RS15140 0.59 +0.8
3,197,890 - ABZR87_RS15140 0.59 +0.3
3,197,890 - ABZR87_RS15140 0.59 -0.9
3,197,900 + ABZR87_RS15140 0.60 -0.2
3,197,900 + ABZR87_RS15140 0.60 -0.6
3,197,900 + ABZR87_RS15140 0.60 +1.0
3,197,900 + ABZR87_RS15140 0.60 +2.2
3,197,901 - ABZR87_RS15140 0.60 -0.0
3,197,901 - ABZR87_RS15140 0.60 -0.0
3,197,901 - ABZR87_RS15140 0.60 -0.3
3,197,901 - ABZR87_RS15140 0.60 +3.1
3,197,934 + ABZR87_RS15140 0.64 +0.3
3,197,934 + ABZR87_RS15140 0.64 -0.4
3,197,934 + ABZR87_RS15140 0.64 -1.2
3,197,935 - ABZR87_RS15140 0.64 +0.9
3,197,935 - ABZR87_RS15140 0.64 +0.8
3,197,935 - ABZR87_RS15140 0.64 -1.0
3,197,935 - ABZR87_RS15140 0.64 +0.5
3,197,935 - ABZR87_RS15140 0.64 +0.2
3,197,935 - ABZR87_RS15140 0.64 +0.0
3,197,935 - ABZR87_RS15140 0.64 +0.6
3,197,935 - ABZR87_RS15140 0.64 +0.8
3,197,935 - ABZR87_RS15140 0.64 +0.1
3,197,935 - ABZR87_RS15140 0.64 +0.8
3,197,938 + ABZR87_RS15140 0.64 +0.8
3,198,023 + ABZR87_RS15140 0.74 -0.5
3,198,023 + ABZR87_RS15140 0.74 -0.2
3,198,024 - ABZR87_RS15140 0.74 +2.2
3,198,242 + +0.6
3,198,242 + +0.9
3,198,242 + +1.3
3,198,243 - +0.6
3,198,243 - -0.1
3,198,247 + -0.2
3,198,247 + -0.7
3,198,247 + +0.1
3,198,248 - -0.1
3,198,248 - -0.0
3,198,250 + +0.1
3,198,250 + -0.8
3,198,250 + +3.0
3,198,250 + -2.3
3,198,250 + +0.0
3,198,250 + +0.6
3,198,251 - +1.5
3,198,251 - -1.4
3,198,251 - -2.1
3,198,251 - +0.0
3,198,251 - -0.5
3,198,251 - +0.6
3,198,251 - -1.5
3,198,399 + ABZR87_RS15145 0.53 +0.3
3,198,399 + ABZR87_RS15145 0.53 -3.0
3,198,399 + ABZR87_RS15145 0.53 -2.1
3,198,400 - ABZR87_RS15145 0.54 -0.9
3,198,499 + +2.0
3,198,500 - +1.0
3,198,509 + -0.6
3,198,521 + +1.2
3,198,521 + +0.1
3,198,521 + -1.0
3,198,521 + +0.0
3,198,522 - -0.3
3,198,522 - -1.5
3,198,522 - -0.4
3,198,566 + +0.5
3,198,567 - +0.2
3,198,567 - +0.1
3,198,588 + -0.5
3,198,640 + ABZR87_RS15150 0.12 -0.8
3,198,656 + ABZR87_RS15150 0.20 +0.3
3,198,656 + ABZR87_RS15150 0.20 +0.2
3,198,657 - ABZR87_RS15150 0.20 +0.5
3,198,657 - ABZR87_RS15150 0.20 -1.2
3,198,733 - ABZR87_RS15150 0.57 +0.5
3,198,817 + +0.0
3,198,817 + +0.9
3,198,818 - +0.2
3,198,818 - -0.2
3,198,835 + +0.2
3,198,836 - -0.3
3,198,836 - +1.1
3,198,960 + +0.3
3,199,006 + -1.3
3,199,006 + -1.4
3,199,006 + -1.2
3,199,006 + -1.0
3,199,007 - +0.0
3,199,007 - -0.3
3,199,007 - +0.3
3,199,007 - +1.0
3,199,036 - +2.3
3,199,156 - +0.2
3,199,446 - -0.4
3,199,446 - +0.2

Or see this region's nucleotide sequence