Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14215

Experiment: root sample 5; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root sample 5; outgrowth in LB
3,000,227	+		ABZR87_RS14210	0.42	-0.1
3,000,227	+		ABZR87_RS14210	0.42	+0.2
3,000,227	+		ABZR87_RS14210	0.42	+1.3
3,000,248	+		ABZR87_RS14210	0.43	+1.6
3,000,248	+		ABZR87_RS14210	0.43	+0.4
3,000,248	+		ABZR87_RS14210	0.43	-2.2
3,000,249	-		ABZR87_RS14210	0.43	-0.7
3,000,302	+		ABZR87_RS14210	0.47	+0.2
3,000,308	+		ABZR87_RS14210	0.47	-1.5
3,000,308	+		ABZR87_RS14210	0.47	-0.0
3,000,308	+		ABZR87_RS14210	0.47	-0.2
3,000,309	-		ABZR87_RS14210	0.47	-1.0
3,000,309	-		ABZR87_RS14210	0.47	+0.2
3,000,309	-		ABZR87_RS14210	0.47	+3.1
3,000,386	+		ABZR87_RS14210	0.52	-1.2
3,000,386	+		ABZR87_RS14210	0.52	+0.6
3,000,386	+		ABZR87_RS14210	0.52	-0.6
3,000,386	+		ABZR87_RS14210	0.52	-0.8
3,000,387	-		ABZR87_RS14210	0.52	-1.5
3,000,387	-		ABZR87_RS14210	0.52	-0.4
3,000,516	-		ABZR87_RS14210	0.61	+0.8
3,000,516	-		ABZR87_RS14210	0.61	+0.1
3,000,593	+		ABZR87_RS14210	0.66	-1.0
3,000,593	+		ABZR87_RS14210	0.66	+1.3
3,000,593	+		ABZR87_RS14210	0.66	-1.3
3,000,594	-		ABZR87_RS14210	0.66	+0.4
3,000,594	-		ABZR87_RS14210	0.66	-0.5
3,000,594	-		ABZR87_RS14210	0.66	+2.0
3,000,625	+		ABZR87_RS14210	0.68	+0.3
3,000,625	+		ABZR87_RS14210	0.68	-0.0
3,000,625	+		ABZR87_RS14210	0.68	-1.7
3,000,625	+		ABZR87_RS14210	0.68	+1.4
3,000,626	-		ABZR87_RS14210	0.68	-0.3
3,000,647	+		ABZR87_RS14210	0.69	+0.4
3,000,671	+		ABZR87_RS14210	0.71	-0.5
3,000,671	+		ABZR87_RS14210	0.71	-1.2
3,000,671	+		ABZR87_RS14210	0.71	+0.5
3,000,671	+		ABZR87_RS14210	0.71	-1.0
3,000,672	-		ABZR87_RS14210	0.71	+0.9
3,000,672	-		ABZR87_RS14210	0.71	-0.2
3,000,672	-		ABZR87_RS14210	0.71	-0.4
3,000,672	-		ABZR87_RS14210	0.71	+0.9
3,000,672	-		ABZR87_RS14210	0.71	-0.4
3,000,672	-		ABZR87_RS14210	0.71	-1.8
3,000,672	-		ABZR87_RS14210	0.71	-0.1
3,000,692	+		ABZR87_RS14210	0.72	+1.7
3,000,693	-		ABZR87_RS14210	0.72	+0.6
3,000,734	+		ABZR87_RS14210	0.75	-0.1
3,000,734	+		ABZR87_RS14210	0.75	-0.6
3,000,734	+		ABZR87_RS14210	0.75	-0.8
3,000,734	+		ABZR87_RS14210	0.75	-1.6
3,000,734	+		ABZR87_RS14210	0.75	+1.5
3,000,734	+		ABZR87_RS14210	0.75	-0.9
3,000,734	+		ABZR87_RS14210	0.75	-0.6
3,000,735	-		ABZR87_RS14210	0.75	-0.6
3,000,735	-		ABZR87_RS14210	0.75	-0.8
3,000,735	-		ABZR87_RS14210	0.75	+0.3
3,000,735	-		ABZR87_RS14210	0.75	+0.2
3,000,735	-		ABZR87_RS14210	0.75	+0.4
3,000,764	+		ABZR87_RS14210	0.77	+3.0
3,000,764	+		ABZR87_RS14210	0.77	+0.7
3,000,764	+		ABZR87_RS14210	0.77	+1.1
3,000,764	+		ABZR87_RS14210	0.77	+1.2
3,000,765	-		ABZR87_RS14210	0.77	-0.7
3,000,765	-		ABZR87_RS14210	0.77	+0.9
3,000,821	+		ABZR87_RS14210	0.81	-0.5
3,000,822	-		ABZR87_RS14210	0.81	+0.8
3,000,917	+		ABZR87_RS14210	0.87	-0.3
3,000,932	+		ABZR87_RS14210	0.88	-1.0
3,000,932	+		ABZR87_RS14210	0.88	+0.3
3,000,960	-				+0.2
3,001,007	+				+1.9
3,001,007	+				+0.5
3,001,007	+				-1.3
3,001,008	-				+0.6
3,001,056	-				+0.2
3,001,092	+				-1.7
3,001,093	-				+0.0
3,001,093	-				-2.8
3,001,093	-				+1.2
3,001,093	-				+1.1
3,001,096	+				+0.2
3,001,096	+				-0.2
3,001,096	+				+0.3
3,001,096	+				+0.5
3,001,096	+				-2.1
3,001,096	+				+0.2
3,001,096	+				-1.4
3,001,097	-				-1.9
3,001,097	-				+0.8
3,001,100	+				+0.1
3,001,100	+				-0.1
3,001,100	+				+0.9
3,001,100	+				+0.1
3,001,101	-				+0.2
3,001,101	-				-0.1
3,001,101	-				-1.0
3,001,262	+				-2.5
3,001,263	-				+1.0
3,001,323	+				-0.9
3,001,323	+				+0.2
3,001,323	+				-1.2
3,001,323	+				-0.2
3,001,323	+				+1.0
3,001,323	+				+0.1
3,001,323	+				+0.8
3,001,323	+				+0.2
3,001,323	+				-0.1
3,001,323	+				+1.2
3,001,323	+				+4.1
3,001,324	-				+1.1
3,001,324	-				+0.4
3,001,324	-				-2.2
3,001,324	-				+1.5
3,001,324	-				-2.1
3,001,328	+				+1.3
3,001,328	+				+1.5
3,001,329	-				+1.1
3,001,329	-				-1.5
3,001,374	-		ABZR87_RS14215	0.12	+0.2
3,001,374	-		ABZR87_RS14215	0.12	+1.4
3,001,379	+		ABZR87_RS14215	0.12	-2.1
3,001,379	+		ABZR87_RS14215	0.12	-0.2
3,001,379	+		ABZR87_RS14215	0.12	-0.4
3,001,380	-		ABZR87_RS14215	0.13	-0.7
3,001,380	-		ABZR87_RS14215	0.13	-1.4
3,001,380	-		ABZR87_RS14215	0.13	+1.6
3,001,380	-		ABZR87_RS14215	0.13	+0.7
3,001,382	+		ABZR87_RS14215	0.13	-0.5
3,001,383	-		ABZR87_RS14215	0.13	-0.8
3,001,383	-		ABZR87_RS14215	0.13	+0.6
3,001,383	-		ABZR87_RS14215	0.13	+0.5
3,001,475	+		ABZR87_RS14215	0.20	-1.6
3,001,475	+		ABZR87_RS14215	0.20	+2.7
3,001,475	+		ABZR87_RS14215	0.20	+1.0
3,001,475	+		ABZR87_RS14215	0.20	+0.9
3,001,475	+		ABZR87_RS14215	0.20	-1.1
3,001,475	+		ABZR87_RS14215	0.20	+2.6
3,001,476	-		ABZR87_RS14215	0.20	-1.1
3,001,476	-		ABZR87_RS14215	0.20	-1.6
3,001,476	-		ABZR87_RS14215	0.20	+4.8
3,001,476	-		ABZR87_RS14215	0.20	+0.9
3,001,476	-		ABZR87_RS14215	0.20	+0.6
3,001,476	-		ABZR87_RS14215	0.20	-1.5
3,001,476	-		ABZR87_RS14215	0.20	-0.3
3,001,476	-		ABZR87_RS14215	0.20	-1.0
3,001,476	-		ABZR87_RS14215	0.20	+1.0
3,001,476	-		ABZR87_RS14215	0.20	+1.0
3,001,643	+		ABZR87_RS14215	0.33	-1.0
3,001,643	+		ABZR87_RS14215	0.33	-0.0
3,001,643	+		ABZR87_RS14215	0.33	+0.2
3,001,643	+		ABZR87_RS14215	0.33	-1.5
3,001,644	-		ABZR87_RS14215	0.33	-0.7
3,001,644	-		ABZR87_RS14215	0.33	-1.4
3,001,644	-		ABZR87_RS14215	0.33	-0.5
3,001,664	+		ABZR87_RS14215	0.35	-1.6
3,001,664	+		ABZR87_RS14215	0.35	-1.1
3,001,664	+		ABZR87_RS14215	0.35	+0.4
3,001,664	+		ABZR87_RS14215	0.35	+1.6
3,001,664	+		ABZR87_RS14215	0.35	-0.8
3,001,664	+		ABZR87_RS14215	0.35	+1.7
3,001,664	+		ABZR87_RS14215	0.35	-2.4
3,001,664	+		ABZR87_RS14215	0.35	-1.3
3,001,665	-		ABZR87_RS14215	0.35	+0.2
3,001,665	-		ABZR87_RS14215	0.35	-0.1
3,001,873	+		ABZR87_RS14215	0.52	+0.0
3,001,873	+		ABZR87_RS14215	0.52	-0.5
3,001,874	-		ABZR87_RS14215	0.52	-0.5
3,001,880	+		ABZR87_RS14215	0.52	+2.2
3,001,880	+		ABZR87_RS14215	0.52	-0.7
3,001,881	-		ABZR87_RS14215	0.52	-1.0
3,001,910	+		ABZR87_RS14215	0.54	-0.1
3,001,911	-		ABZR87_RS14215	0.55	+0.2
3,001,911	-		ABZR87_RS14215	0.55	+3.4
3,001,944	-		ABZR87_RS14215	0.57	+0.5
3,002,118	+		ABZR87_RS14215	0.71	+0.2
3,002,118	+		ABZR87_RS14215	0.71	-0.1
3,002,119	-		ABZR87_RS14215	0.71	-0.6
3,002,486	+				-1.2
3,002,487	-				-0.4
3,002,487	-				+4.8
3,002,487	-				-1.2
3,002,487	-				-0.8
3,002,487	-				-0.4
3,002,487	-				-0.4
3,002,540	+				-0.4
3,002,540	+				+3.1
3,002,541	-				-1.0
3,002,564	+				+0.0
3,002,564	+				-2.2
3,002,565	-				+1.7
3,002,565	-				+0.4
3,002,600	+				+1.0
3,002,600	+				-0.5
3,002,601	-				+0.1
3,002,601	-				+1.3
3,002,601	-				+1.4
3,002,744	+		ABZR87_RS14220	0.11	-0.3
3,002,745	-		ABZR87_RS14220	0.11	+1.4
3,002,745	-		ABZR87_RS14220	0.11	+1.3
3,002,958	-		ABZR87_RS14220	0.22	+0.0
3,002,958	-		ABZR87_RS14220	0.22	+1.8
3,002,958	-		ABZR87_RS14220	0.22	-0.2
3,002,990	+		ABZR87_RS14220	0.23	+1.6
3,003,002	+		ABZR87_RS14220	0.24	-1.1
3,003,002	+		ABZR87_RS14220	0.24	+1.5
3,003,003	-		ABZR87_RS14220	0.24	+0.2
3,003,003	-		ABZR87_RS14220	0.24	-0.4
3,003,038	+		ABZR87_RS14220	0.26	-0.1
3,003,038	+		ABZR87_RS14220	0.26	+0.1
3,003,039	-		ABZR87_RS14220	0.26	+0.2
3,003,053	+		ABZR87_RS14220	0.27	-0.4
3,003,053	+		ABZR87_RS14220	0.27	+2.1
3,003,054	-		ABZR87_RS14220	0.27	+1.1
3,003,054	-		ABZR87_RS14220	0.27	-0.3
3,003,054	-		ABZR87_RS14220	0.27	-0.6
3,003,054	-		ABZR87_RS14220	0.27	+0.7
3,003,065	+		ABZR87_RS14220	0.27	+0.2
3,003,065	+		ABZR87_RS14220	0.27	-2.4
3,003,066	-		ABZR87_RS14220	0.27	-0.1
3,003,066	-		ABZR87_RS14220	0.27	+0.2
3,003,066	-		ABZR87_RS14220	0.27	-0.5
3,003,066	-		ABZR87_RS14220	0.27	+0.2
3,003,131	+		ABZR87_RS14220	0.31	+0.1
3,003,131	+		ABZR87_RS14220	0.31	+1.6
3,003,131	+		ABZR87_RS14220	0.31	-0.4
3,003,132	-		ABZR87_RS14220	0.31	-1.2
3,003,258	-		ABZR87_RS14220	0.37	+1.3
3,003,267	-		ABZR87_RS14220	0.38	+0.5
3,003,312	-		ABZR87_RS14220	0.40	+0.9
3,003,449	+		ABZR87_RS14220	0.47	+1.0
3,003,449	+		ABZR87_RS14220	0.47	-0.2
3,003,450	-		ABZR87_RS14220	0.47	-0.6
3,003,483	-		ABZR87_RS14220	0.49	-0.2
3,003,483	-		ABZR87_RS14220	0.49	-0.2
3,003,483	-		ABZR87_RS14220	0.49	+1.5