Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14005

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14000 and ABZR87_RS14005 are separated by 88 nucleotidesABZR87_RS14005 and ABZR87_RS14010 are separated by 9 nucleotidesABZR87_RS14010 and ABZR87_RS14015 are separated by 300 nucleotidesABZR87_RS14015 and ABZR87_RS14020 are separated by 27 nucleotides ABZR87_RS14000: ABZR87_RS14000 - NADH:flavin oxidoreductase/NADH oxidase family protein, at 2,957,719 to 2,958,954 _RS14000 ABZR87_RS14005: ABZR87_RS14005 - MerR family transcriptional regulator, at 2,959,043 to 2,959,501 _RS14005 ABZR87_RS14010: ABZR87_RS14010 - avidin/streptavidin family protein, at 2,959,511 to 2,959,861 _RS14010 ABZR87_RS14015: ABZR87_RS14015 - hypothetical protein, at 2,960,162 to 2,960,389 _RS14015 ABZR87_RS14020: ABZR87_RS14020 - LysE/ArgO family amino acid transporter, at 2,960,417 to 2,961,058 _RS14020 Position (kb) 2959 2960Strain fitness (log2 ratio) -2 -1 0 1 2at 2958.116 kb on + strand, within ABZR87_RS14000at 2958.117 kb on - strand, within ABZR87_RS14000at 2958.117 kb on - strand, within ABZR87_RS14000at 2958.117 kb on - strand, within ABZR87_RS14000at 2958.177 kb on - strand, within ABZR87_RS14000at 2958.177 kb on - strand, within ABZR87_RS14000at 2958.342 kb on + strand, within ABZR87_RS14000at 2958.434 kb on + strand, within ABZR87_RS14000at 2958.435 kb on - strand, within ABZR87_RS14000at 2958.435 kb on - strand, within ABZR87_RS14000at 2958.435 kb on - strand, within ABZR87_RS14000at 2958.466 kb on - strand, within ABZR87_RS14000at 2958.827 kb on + strand, within ABZR87_RS14000at 2958.827 kb on + strand, within ABZR87_RS14000at 2958.827 kb on + strand, within ABZR87_RS14000at 2958.827 kb on + strand, within ABZR87_RS14000at 2958.827 kb on + strand, within ABZR87_RS14000at 2958.828 kb on - strand, within ABZR87_RS14000at 2958.828 kb on - strand, within ABZR87_RS14000at 2959.157 kb on + strand, within ABZR87_RS14005at 2959.158 kb on - strand, within ABZR87_RS14005at 2959.158 kb on - strand, within ABZR87_RS14005at 2959.158 kb on - strand, within ABZR87_RS14005at 2959.513 kb on - strandat 2959.735 kb on - strand, within ABZR87_RS14010at 2959.735 kb on - strand, within ABZR87_RS14010at 2959.735 kb on - strand, within ABZR87_RS14010at 2959.735 kb on - strand, within ABZR87_RS14010at 2959.827 kb on + strandat 2959.894 kb on + strandat 2959.894 kb on + strandat 2959.894 kb on + strandat 2959.894 kb on + strandat 2959.894 kb on + strandat 2959.894 kb on + strandat 2959.894 kb on + strandat 2959.894 kb on + strandat 2959.895 kb on - strandat 2959.895 kb on - strandat 2959.895 kb on - strandat 2959.895 kb on - strandat 2959.895 kb on - strandat 2959.895 kb on - strandat 2959.895 kb on - strandat 2959.895 kb on - strandat 2959.915 kb on + strandat 2959.915 kb on + strandat 2959.915 kb on + strandat 2959.915 kb on + strandat 2959.916 kb on - strandat 2959.916 kb on - strandat 2959.916 kb on - strandat 2960.079 kb on + strandat 2960.087 kb on - strandat 2960.087 kb on - strandat 2960.388 kb on - strandat 2960.388 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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2,958,116 + ABZR87_RS14000 0.32 -0.3
2,958,117 - ABZR87_RS14000 0.32 -0.4
2,958,117 - ABZR87_RS14000 0.32 -0.6
2,958,117 - ABZR87_RS14000 0.32 -1.4
2,958,177 - ABZR87_RS14000 0.37 +0.0
2,958,177 - ABZR87_RS14000 0.37 +0.9
2,958,342 + ABZR87_RS14000 0.50 -0.9
2,958,434 + ABZR87_RS14000 0.58 -0.4
2,958,435 - ABZR87_RS14000 0.58 -1.2
2,958,435 - ABZR87_RS14000 0.58 -0.2
2,958,435 - ABZR87_RS14000 0.58 -0.9
2,958,466 - ABZR87_RS14000 0.60 +1.3
2,958,827 + ABZR87_RS14000 0.90 +0.6
2,958,827 + ABZR87_RS14000 0.90 -0.3
2,958,827 + ABZR87_RS14000 0.90 -0.6
2,958,827 + ABZR87_RS14000 0.90 +0.1
2,958,827 + ABZR87_RS14000 0.90 -1.1
2,958,828 - ABZR87_RS14000 0.90 -0.0
2,958,828 - ABZR87_RS14000 0.90 -0.1
2,959,157 + ABZR87_RS14005 0.25 -1.1
2,959,158 - ABZR87_RS14005 0.25 +0.4
2,959,158 - ABZR87_RS14005 0.25 -0.9
2,959,158 - ABZR87_RS14005 0.25 -0.9
2,959,513 - -0.5
2,959,735 - ABZR87_RS14010 0.64 +1.3
2,959,735 - ABZR87_RS14010 0.64 -1.5
2,959,735 - ABZR87_RS14010 0.64 -0.1
2,959,735 - ABZR87_RS14010 0.64 +0.7
2,959,827 + -0.7
2,959,894 + -0.5
2,959,894 + +0.6
2,959,894 + -0.6
2,959,894 + -0.2
2,959,894 + +0.5
2,959,894 + -0.2
2,959,894 + +0.6
2,959,894 + +0.7
2,959,895 - -1.1
2,959,895 - +1.2
2,959,895 - +0.4
2,959,895 - +1.1
2,959,895 - -0.3
2,959,895 - -1.6
2,959,895 - -1.1
2,959,895 - -1.1
2,959,915 + -1.1
2,959,915 + -1.0
2,959,915 + -1.1
2,959,915 + -0.2
2,959,916 - +2.0
2,959,916 - +0.4
2,959,916 - +0.8
2,960,079 + +0.9
2,960,087 - +0.4
2,960,087 - -2.4
2,960,388 - -2.1
2,960,388 - +0.5

Or see this region's nucleotide sequence