Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14000 and ABZR87_RS14005 are separated by 88 nucleotides ABZR87_RS14005 and ABZR87_RS14010 are separated by 9 nucleotides ABZR87_RS14010 and ABZR87_RS14015 are separated by 300 nucleotides ABZR87_RS14015 and ABZR87_RS14020 are separated by 27 nucleotides
ABZR87_RS14000: ABZR87_RS14000 - NADH:flavin oxidoreductase/NADH oxidase family protein, at 2,957,719 to 2,958,954
_RS14000
ABZR87_RS14005: ABZR87_RS14005 - MerR family transcriptional regulator, at 2,959,043 to 2,959,501
_RS14005
ABZR87_RS14010: ABZR87_RS14010 - avidin/streptavidin family protein, at 2,959,511 to 2,959,861
_RS14010
ABZR87_RS14015: ABZR87_RS14015 - hypothetical protein, at 2,960,162 to 2,960,389
_RS14015
ABZR87_RS14020: ABZR87_RS14020 - LysE/ArgO family amino acid transporter, at 2,960,417 to 2,961,058
_RS14020
Position (kb)
2959
2960 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2958.116 kb on + strand, within ABZR87_RS14000 at 2958.117 kb on - strand, within ABZR87_RS14000 at 2958.117 kb on - strand, within ABZR87_RS14000 at 2958.117 kb on - strand, within ABZR87_RS14000 at 2958.177 kb on - strand, within ABZR87_RS14000 at 2958.177 kb on - strand, within ABZR87_RS14000 at 2958.342 kb on + strand, within ABZR87_RS14000 at 2958.434 kb on + strand, within ABZR87_RS14000 at 2958.435 kb on - strand, within ABZR87_RS14000 at 2958.435 kb on - strand, within ABZR87_RS14000 at 2958.435 kb on - strand, within ABZR87_RS14000 at 2958.466 kb on - strand, within ABZR87_RS14000 at 2958.827 kb on + strand, within ABZR87_RS14000 at 2958.827 kb on + strand, within ABZR87_RS14000 at 2958.827 kb on + strand, within ABZR87_RS14000 at 2958.827 kb on + strand, within ABZR87_RS14000 at 2958.827 kb on + strand, within ABZR87_RS14000 at 2958.828 kb on - strand, within ABZR87_RS14000 at 2958.828 kb on - strand, within ABZR87_RS14000 at 2959.157 kb on + strand, within ABZR87_RS14005 at 2959.158 kb on - strand, within ABZR87_RS14005 at 2959.158 kb on - strand, within ABZR87_RS14005 at 2959.158 kb on - strand, within ABZR87_RS14005 at 2959.513 kb on - strand at 2959.735 kb on - strand, within ABZR87_RS14010 at 2959.735 kb on - strand, within ABZR87_RS14010 at 2959.735 kb on - strand, within ABZR87_RS14010 at 2959.735 kb on - strand, within ABZR87_RS14010 at 2959.827 kb on + strand at 2959.894 kb on + strand at 2959.894 kb on + strand at 2959.894 kb on + strand at 2959.894 kb on + strand at 2959.894 kb on + strand at 2959.894 kb on + strand at 2959.894 kb on + strand at 2959.894 kb on + strand at 2959.895 kb on - strand at 2959.895 kb on - strand at 2959.895 kb on - strand at 2959.895 kb on - strand at 2959.895 kb on - strand at 2959.895 kb on - strand at 2959.895 kb on - strand at 2959.895 kb on - strand at 2959.915 kb on + strand at 2959.915 kb on + strand at 2959.915 kb on + strand at 2959.915 kb on + strand at 2959.916 kb on - strand at 2959.916 kb on - strand at 2959.916 kb on - strand at 2960.079 kb on + strand at 2960.087 kb on - strand at 2960.087 kb on - strand at 2960.388 kb on - strand at 2960.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 2,958,116 + ABZR87_RS14000 0.32 -0.3 2,958,117 - ABZR87_RS14000 0.32 -0.4 2,958,117 - ABZR87_RS14000 0.32 -0.6 2,958,117 - ABZR87_RS14000 0.32 -1.4 2,958,177 - ABZR87_RS14000 0.37 +0.0 2,958,177 - ABZR87_RS14000 0.37 +0.9 2,958,342 + ABZR87_RS14000 0.50 -0.9 2,958,434 + ABZR87_RS14000 0.58 -0.4 2,958,435 - ABZR87_RS14000 0.58 -1.2 2,958,435 - ABZR87_RS14000 0.58 -0.2 2,958,435 - ABZR87_RS14000 0.58 -0.9 2,958,466 - ABZR87_RS14000 0.60 +1.3 2,958,827 + ABZR87_RS14000 0.90 +0.6 2,958,827 + ABZR87_RS14000 0.90 -0.3 2,958,827 + ABZR87_RS14000 0.90 -0.6 2,958,827 + ABZR87_RS14000 0.90 +0.1 2,958,827 + ABZR87_RS14000 0.90 -1.1 2,958,828 - ABZR87_RS14000 0.90 -0.0 2,958,828 - ABZR87_RS14000 0.90 -0.1 2,959,157 + ABZR87_RS14005 0.25 -1.1 2,959,158 - ABZR87_RS14005 0.25 +0.4 2,959,158 - ABZR87_RS14005 0.25 -0.9 2,959,158 - ABZR87_RS14005 0.25 -0.9 2,959,513 - -0.5 2,959,735 - ABZR87_RS14010 0.64 +1.3 2,959,735 - ABZR87_RS14010 0.64 -1.5 2,959,735 - ABZR87_RS14010 0.64 -0.1 2,959,735 - ABZR87_RS14010 0.64 +0.7 2,959,827 + -0.7 2,959,894 + -0.5 2,959,894 + +0.6 2,959,894 + -0.6 2,959,894 + -0.2 2,959,894 + +0.5 2,959,894 + -0.2 2,959,894 + +0.6 2,959,894 + +0.7 2,959,895 - -1.1 2,959,895 - +1.2 2,959,895 - +0.4 2,959,895 - +1.1 2,959,895 - -0.3 2,959,895 - -1.6 2,959,895 - -1.1 2,959,895 - -1.1 2,959,915 + -1.1 2,959,915 + -1.0 2,959,915 + -1.1 2,959,915 + -0.2 2,959,916 - +2.0 2,959,916 - +0.4 2,959,916 - +0.8 2,960,079 + +0.9 2,960,087 - +0.4 2,960,087 - -2.4 2,960,388 - -2.1 2,960,388 - +0.5
Or see this region's nucleotide sequence