Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13070

Experiment: root sample 5; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root sample 5; outgrowth in LB
2,773,222	+		ABZR87_RS13065	0.22	+1.7
2,773,222	+		ABZR87_RS13065	0.22	-0.9
2,773,222	+		ABZR87_RS13065	0.22	-1.7
2,773,222	+		ABZR87_RS13065	0.22	-0.4
2,773,223	-		ABZR87_RS13065	0.22	+0.3
2,773,223	-		ABZR87_RS13065	0.22	+0.4
2,773,327	+		ABZR87_RS13065	0.32	+0.1
2,773,328	-		ABZR87_RS13065	0.32	+0.6
2,773,348	+		ABZR87_RS13065	0.34	-0.0
2,773,634	-		ABZR87_RS13065	0.59	-1.3
2,773,634	-		ABZR87_RS13065	0.59	+0.8
2,773,634	-		ABZR87_RS13065	0.59	+1.1
2,773,634	-		ABZR87_RS13065	0.59	-0.7
2,773,634	-		ABZR87_RS13065	0.59	-1.0
2,773,654	+		ABZR87_RS13065	0.61	+0.1
2,773,654	+		ABZR87_RS13065	0.61	+0.1
2,773,655	-		ABZR87_RS13065	0.61	-1.7
2,773,655	-		ABZR87_RS13065	0.61	-0.5
2,773,655	-		ABZR87_RS13065	0.61	-0.8
2,773,819	+		ABZR87_RS13065	0.75	-0.5
2,773,820	-		ABZR87_RS13065	0.76	+0.3
2,774,066	+				+0.9
2,774,066	+				-0.1
2,774,067	-				+1.6
2,774,067	-				+0.3
2,774,067	-				-1.3
2,774,067	-				-0.1
2,774,067	-				-0.7
2,774,089	+				-1.3
2,774,089	+				-1.0
2,774,090	-				-1.6
2,774,155	+				+0.6
2,774,156	-				-0.2
2,774,156	-				+1.1
2,774,156	-				-0.6
2,774,206	+				+0.9
2,774,207	-				-1.8
2,774,207	-				+0.4
2,774,253	-				+0.9
2,774,301	+				-2.0
2,774,301	+				-0.1
2,774,302	-				+0.1
2,774,398	+		ABZR87_RS13070	0.12	+0.0
2,774,438	+		ABZR87_RS13070	0.14	+0.7
2,774,438	+		ABZR87_RS13070	0.14	+0.0
2,774,438	+		ABZR87_RS13070	0.14	+3.3
2,774,439	-		ABZR87_RS13070	0.14	-0.1
2,774,439	-		ABZR87_RS13070	0.14	-1.0
2,774,439	-		ABZR87_RS13070	0.14	-0.1
2,774,473	+		ABZR87_RS13070	0.17	+0.3
2,774,474	-		ABZR87_RS13070	0.17	+1.0
2,774,474	-		ABZR87_RS13070	0.17	-0.8
2,774,474	-		ABZR87_RS13070	0.17	+1.0
2,774,477	+		ABZR87_RS13070	0.17	-0.4
2,774,477	+		ABZR87_RS13070	0.17	-0.5
2,774,477	+		ABZR87_RS13070	0.17	+0.3
2,774,477	+		ABZR87_RS13070	0.17	+0.2
2,774,477	+		ABZR87_RS13070	0.17	-1.8
2,774,477	+		ABZR87_RS13070	0.17	-1.0
2,774,478	-		ABZR87_RS13070	0.17	+2.1
2,774,478	-		ABZR87_RS13070	0.17	-1.1
2,774,478	-		ABZR87_RS13070	0.17	-1.5
2,774,478	-		ABZR87_RS13070	0.17	+1.8
2,774,483	-		ABZR87_RS13070	0.17	-2.0
2,774,495	+		ABZR87_RS13070	0.18	+0.4
2,774,496	-		ABZR87_RS13070	0.18	+0.1
2,774,509	-		ABZR87_RS13070	0.19	-1.0
2,774,521	-		ABZR87_RS13070	0.19	-0.8
2,774,521	-		ABZR87_RS13070	0.19	+0.0
2,774,521	-		ABZR87_RS13070	0.19	+0.6
2,774,528	+		ABZR87_RS13070	0.20	-0.7
2,774,529	-		ABZR87_RS13070	0.20	+0.2
2,774,655	-		ABZR87_RS13070	0.27	-0.4
2,774,655	-		ABZR87_RS13070	0.27	+1.4
2,774,703	+		ABZR87_RS13070	0.30	-1.4
2,774,703	+		ABZR87_RS13070	0.30	-0.8
2,774,703	+		ABZR87_RS13070	0.30	+0.6
2,774,704	-		ABZR87_RS13070	0.30	-1.3
2,774,704	-		ABZR87_RS13070	0.30	-0.3
2,774,713	+		ABZR87_RS13070	0.31	+0.3
2,774,714	-		ABZR87_RS13070	0.31	+0.7
2,774,714	-		ABZR87_RS13070	0.31	-0.5
2,774,714	-		ABZR87_RS13070	0.31	-0.6
2,774,740	+		ABZR87_RS13070	0.33	-0.6
2,774,747	+		ABZR87_RS13070	0.33	+0.8
2,774,747	+		ABZR87_RS13070	0.33	+0.3
2,774,747	+		ABZR87_RS13070	0.33	-0.7
2,774,748	-		ABZR87_RS13070	0.33	-0.2
2,774,812	+		ABZR87_RS13070	0.37	+0.7
2,774,853	+		ABZR87_RS13070	0.39	-1.2
2,774,854	-		ABZR87_RS13070	0.39	-0.9
2,774,854	-		ABZR87_RS13070	0.39	+1.9
2,774,854	-		ABZR87_RS13070	0.39	+1.7
2,774,895	+		ABZR87_RS13070	0.42	-0.8
2,774,895	+		ABZR87_RS13070	0.42	-2.6
2,774,896	-		ABZR87_RS13070	0.42	-0.1
2,774,896	-		ABZR87_RS13070	0.42	-1.1
2,774,896	-		ABZR87_RS13070	0.42	+0.2
2,774,896	-		ABZR87_RS13070	0.42	+1.2
2,774,934	+		ABZR87_RS13070	0.44	+1.2
2,774,934	+		ABZR87_RS13070	0.44	+0.3
2,774,986	+		ABZR87_RS13070	0.47	-0.4
2,775,029	+		ABZR87_RS13070	0.50	+0.5
2,775,029	+		ABZR87_RS13070	0.50	-0.1
2,775,030	-		ABZR87_RS13070	0.50	-0.4
2,775,136	-		ABZR87_RS13070	0.56	-0.5
2,775,139	+		ABZR87_RS13070	0.57	+1.1
2,775,139	+		ABZR87_RS13070	0.57	-1.4
2,775,139	+		ABZR87_RS13070	0.57	+2.1
2,775,139	+		ABZR87_RS13070	0.57	-0.7
2,775,140	-		ABZR87_RS13070	0.57	-0.9
2,775,140	-		ABZR87_RS13070	0.57	-0.1
2,775,140	-		ABZR87_RS13070	0.57	-1.7
2,775,169	+		ABZR87_RS13070	0.58	-0.3
2,775,169	+		ABZR87_RS13070	0.58	+1.0
2,775,169	+		ABZR87_RS13070	0.58	-1.0
2,775,170	-		ABZR87_RS13070	0.58	-0.6
2,775,178	-		ABZR87_RS13070	0.59	+1.4
2,775,236	+		ABZR87_RS13070	0.62	+0.4
2,775,236	+		ABZR87_RS13070	0.62	+1.0
2,775,237	-		ABZR87_RS13070	0.62	-0.1
2,775,237	-		ABZR87_RS13070	0.62	-0.6
2,775,237	-		ABZR87_RS13070	0.62	-1.4
2,775,259	+		ABZR87_RS13070	0.64	-0.1
2,775,259	+		ABZR87_RS13070	0.64	-0.2
2,775,260	-		ABZR87_RS13070	0.64	-0.6
2,775,260	-		ABZR87_RS13070	0.64	+0.5
2,775,260	-		ABZR87_RS13070	0.64	-1.8
2,775,260	-		ABZR87_RS13070	0.64	-0.5
2,775,280	-		ABZR87_RS13070	0.65	+1.3
2,775,325	+		ABZR87_RS13070	0.68	-0.2
2,775,325	+		ABZR87_RS13070	0.68	-1.2
2,775,325	+		ABZR87_RS13070	0.68	-0.5
2,775,325	+		ABZR87_RS13070	0.68	+0.2
2,775,326	-		ABZR87_RS13070	0.68	+0.2
2,775,326	-		ABZR87_RS13070	0.68	-2.1
2,775,326	-		ABZR87_RS13070	0.68	-0.8
2,775,360	+		ABZR87_RS13070	0.70	-0.9
2,775,361	-		ABZR87_RS13070	0.70	-1.5
2,775,361	-		ABZR87_RS13070	0.70	+0.4
2,775,368	-		ABZR87_RS13070	0.70	-0.4
2,775,383	-		ABZR87_RS13070	0.71	-1.1
2,775,397	-		ABZR87_RS13070	0.72	+0.9
2,775,478	+		ABZR87_RS13070	0.77	-0.5
2,775,478	+		ABZR87_RS13070	0.77	+0.4
2,775,501	+		ABZR87_RS13070	0.78	-1.9
2,775,502	-		ABZR87_RS13070	0.78	+0.2
2,775,509	-		ABZR87_RS13070	0.79	+1.7
2,775,509	-		ABZR87_RS13070	0.79	-0.4
2,775,509	-		ABZR87_RS13070	0.79	-1.8
2,775,590	+		ABZR87_RS13070	0.84	-0.6
2,775,603	-		ABZR87_RS13070	0.84	-0.7
2,775,603	-		ABZR87_RS13070	0.84	-0.1
2,775,615	+		ABZR87_RS13070	0.85	-0.3
2,775,615	+		ABZR87_RS13070	0.85	-1.5
2,775,741	+				-0.1
2,775,742	-				+0.4
2,775,753	+				-1.7
2,775,753	+				+0.3
2,775,753	+				-0.0
2,775,754	-				+1.4
2,775,782	-				+1.9
2,775,808	-				-1.1
2,775,865	+				+0.5
2,775,866	-				-1.0
2,775,866	-				+1.4
2,775,888	+				-1.1
2,775,889	-				-0.5
2,775,889	-				+1.0
2,775,889	-				-0.8
2,775,947	+				-0.8
2,775,947	+				+1.6
2,775,947	+				-0.9
2,775,948	-				+0.1
2,775,948	-				+1.3
2,775,948	-				+0.6
2,775,989	+				-0.9
2,775,989	+				-0.5
2,775,989	+				-2.1
2,775,989	+				+1.1
2,775,989	+				-1.3
2,775,989	+				+1.2
2,775,990	-				+1.2
2,775,990	-				-1.5
2,775,990	-				+0.6
2,776,030	+				-0.2
2,776,030	+				-0.7
2,776,030	+				+0.7
2,776,030	+				+3.1
2,776,031	-				-0.3
2,776,075	+				-0.8
2,776,075	+				-1.6
2,776,075	+				+2.3
2,776,076	-				+1.1
2,776,076	-				-1.2
2,776,110	+		ABZR87_RS13075	0.17	+2.0
2,776,110	+		ABZR87_RS13075	0.17	-0.7
2,776,111	-		ABZR87_RS13075	0.17	-0.6
2,776,111	-		ABZR87_RS13075	0.17	+2.0
2,776,123	-		ABZR87_RS13075	0.19	+1.3
2,776,156	+		ABZR87_RS13075	0.26	+2.1
2,776,156	+		ABZR87_RS13075	0.26	+0.6
2,776,156	+		ABZR87_RS13075	0.26	+0.5
2,776,157	-		ABZR87_RS13075	0.26	+1.5
2,776,157	-		ABZR87_RS13075	0.26	-1.5
2,776,157	-		ABZR87_RS13075	0.26	+0.4
2,776,215	+		ABZR87_RS13075	0.38	+0.1
2,776,215	+		ABZR87_RS13075	0.38	-0.4
2,776,216	-		ABZR87_RS13075	0.38	-1.4
2,776,216	-		ABZR87_RS13075	0.38	+0.8
2,776,259	+		ABZR87_RS13075	0.47	+0.6
2,776,259	+		ABZR87_RS13075	0.47	+0.3
2,776,259	+		ABZR87_RS13075	0.47	-1.0
2,776,260	-		ABZR87_RS13075	0.48	+0.8
2,776,274	+		ABZR87_RS13075	0.50	+0.6
2,776,410	+		ABZR87_RS13075	0.78	-0.5
2,776,410	+		ABZR87_RS13075	0.78	+0.3
2,776,410	+		ABZR87_RS13075	0.78	-0.3
2,776,411	-		ABZR87_RS13075	0.79	+0.6
2,776,411	-		ABZR87_RS13075	0.79	-1.1
2,776,411	-		ABZR87_RS13075	0.79	-0.4
2,776,466	-				+0.2
2,776,466	-				-0.1
2,776,498	+				-0.3
2,776,498	+				+1.4
2,776,498	+				+4.4
2,776,499	-				-1.7
2,776,508	+				-0.4
2,776,508	+				+1.0
2,776,508	+				+3.2
2,776,552	-				+3.0
2,776,602	+		ABZR87_RS13080	0.19	+1.4
2,776,632	+		ABZR87_RS13080	0.25	+0.3
2,776,632	+		ABZR87_RS13080	0.25	+0.4
2,776,632	+		ABZR87_RS13080	0.25	+2.3
2,776,633	-		ABZR87_RS13080	0.25	+0.9
2,776,633	-		ABZR87_RS13080	0.25	+2.6
2,776,633	-		ABZR87_RS13080	0.25	+0.1
2,776,633	-		ABZR87_RS13080	0.25	+0.8
2,776,644	+		ABZR87_RS13080	0.28	-2.1
2,776,644	+		ABZR87_RS13080	0.28	+1.0
2,776,645	-		ABZR87_RS13080	0.28	-0.0
2,776,724	+		ABZR87_RS13080	0.44	-0.3
2,776,724	+		ABZR87_RS13080	0.44	-0.7
2,776,725	-		ABZR87_RS13080	0.44	-0.6
2,776,725	-		ABZR87_RS13080	0.44	-0.4
2,776,762	+		ABZR87_RS13080	0.52	+3.4
2,776,763	-		ABZR87_RS13080	0.52	-1.4
2,776,763	-		ABZR87_RS13080	0.52	+0.6
2,776,763	-		ABZR87_RS13080	0.52	-0.6
2,776,763	-		ABZR87_RS13080	0.52	+0.8
2,776,763	-		ABZR87_RS13080	0.52	+1.2
2,776,773	+		ABZR87_RS13080	0.54	-0.4
2,776,773	+		ABZR87_RS13080	0.54	+1.1
2,776,774	-		ABZR87_RS13080	0.54	-0.6
2,776,786	+		ABZR87_RS13080	0.57	-0.1
2,776,827	+		ABZR87_RS13080	0.65	+0.1
2,776,827	+		ABZR87_RS13080	0.65	-0.3
2,776,827	+		ABZR87_RS13080	0.65	+1.2
2,776,828	-		ABZR87_RS13080	0.66	+0.2
2,776,860	-		ABZR87_RS13080	0.72	-0.5