Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12160 and ABZR87_RS12165 are separated by 112 nucleotides ABZR87_RS12165 and ABZR87_RS12170 are separated by 269 nucleotides
ABZR87_RS12160: ABZR87_RS12160 - muramoyltetrapeptide carboxypeptidase, at 2,576,802 to 2,577,728
_RS12160
ABZR87_RS12165: ABZR87_RS12165 - ABC-F family ATPase, at 2,577,841 to 2,579,463
_RS12165
ABZR87_RS12170: ABZR87_RS12170 - acetyl-CoA hydrolase/transferase family protein, at 2,579,733 to 2,581,280
_RS12170
Position (kb)
2577
2578
2579
2580 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2577.726 kb on + strand at 2577.726 kb on + strand at 2577.727 kb on - strand at 2577.928 kb on + strand at 2578.066 kb on + strand, within ABZR87_RS12165 at 2578.067 kb on - strand, within ABZR87_RS12165 at 2578.147 kb on + strand, within ABZR87_RS12165 at 2578.147 kb on + strand, within ABZR87_RS12165 at 2578.148 kb on - strand, within ABZR87_RS12165 at 2578.148 kb on - strand, within ABZR87_RS12165 at 2578.148 kb on - strand, within ABZR87_RS12165 at 2578.148 kb on - strand, within ABZR87_RS12165 at 2578.177 kb on + strand, within ABZR87_RS12165 at 2578.178 kb on - strand, within ABZR87_RS12165 at 2578.178 kb on - strand, within ABZR87_RS12165 at 2578.178 kb on - strand, within ABZR87_RS12165 at 2578.178 kb on - strand, within ABZR87_RS12165 at 2578.207 kb on + strand, within ABZR87_RS12165 at 2578.217 kb on - strand, within ABZR87_RS12165 at 2578.225 kb on + strand, within ABZR87_RS12165 at 2578.226 kb on - strand, within ABZR87_RS12165 at 2578.226 kb on - strand, within ABZR87_RS12165 at 2578.226 kb on - strand, within ABZR87_RS12165 at 2578.519 kb on + strand, within ABZR87_RS12165 at 2578.538 kb on - strand, within ABZR87_RS12165 at 2578.549 kb on + strand, within ABZR87_RS12165 at 2578.558 kb on + strand, within ABZR87_RS12165 at 2578.559 kb on - strand, within ABZR87_RS12165 at 2578.825 kb on + strand, within ABZR87_RS12165 at 2578.825 kb on + strand, within ABZR87_RS12165 at 2578.825 kb on + strand, within ABZR87_RS12165 at 2578.825 kb on + strand, within ABZR87_RS12165 at 2578.826 kb on - strand, within ABZR87_RS12165 at 2579.020 kb on + strand, within ABZR87_RS12165 at 2579.039 kb on - strand, within ABZR87_RS12165 at 2579.039 kb on - strand, within ABZR87_RS12165 at 2579.426 kb on - strand at 2579.434 kb on + strand at 2579.435 kb on - strand at 2579.435 kb on - strand at 2579.435 kb on - strand at 2579.623 kb on + strand at 2579.623 kb on + strand at 2579.624 kb on - strand at 2579.638 kb on + strand at 2579.638 kb on + strand at 2579.639 kb on - strand at 2579.639 kb on - strand at 2579.718 kb on + strand at 2579.719 kb on - strand at 2579.745 kb on - strand at 2579.745 kb on - strand at 2579.745 kb on - strand at 2579.745 kb on - strand at 2579.965 kb on + strand, within ABZR87_RS12170 at 2579.966 kb on - strand, within ABZR87_RS12170 at 2580.272 kb on + strand, within ABZR87_RS12170 at 2580.273 kb on - strand, within ABZR87_RS12170 at 2580.348 kb on + strand, within ABZR87_RS12170 at 2580.348 kb on + strand, within ABZR87_RS12170 at 2580.348 kb on + strand, within ABZR87_RS12170 at 2580.348 kb on + strand, within ABZR87_RS12170 at 2580.348 kb on + strand, within ABZR87_RS12170 at 2580.348 kb on + strand, within ABZR87_RS12170 at 2580.348 kb on + strand, within ABZR87_RS12170 at 2580.348 kb on + strand, within ABZR87_RS12170 at 2580.349 kb on - strand, within ABZR87_RS12170 at 2580.349 kb on - strand, within ABZR87_RS12170 at 2580.349 kb on - strand, within ABZR87_RS12170 at 2580.349 kb on - strand, within ABZR87_RS12170 at 2580.349 kb on - strand, within ABZR87_RS12170 at 2580.349 kb on - strand, within ABZR87_RS12170 at 2580.349 kb on - strand, within ABZR87_RS12170 at 2580.350 kb on + strand, within ABZR87_RS12170 at 2580.350 kb on + strand, within ABZR87_RS12170 at 2580.351 kb on - strand, within ABZR87_RS12170 at 2580.351 kb on - strand, within ABZR87_RS12170 at 2580.432 kb on - strand, within ABZR87_RS12170
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 2,577,726 + +0.7 2,577,726 + -0.0 2,577,727 - -0.7 2,577,928 + -1.3 2,578,066 + ABZR87_RS12165 0.14 -1.6 2,578,067 - ABZR87_RS12165 0.14 -0.8 2,578,147 + ABZR87_RS12165 0.19 -0.3 2,578,147 + ABZR87_RS12165 0.19 -2.9 2,578,148 - ABZR87_RS12165 0.19 +0.9 2,578,148 - ABZR87_RS12165 0.19 -1.3 2,578,148 - ABZR87_RS12165 0.19 -1.4 2,578,148 - ABZR87_RS12165 0.19 -2.5 2,578,177 + ABZR87_RS12165 0.21 -0.9 2,578,178 - ABZR87_RS12165 0.21 -1.6 2,578,178 - ABZR87_RS12165 0.21 +1.4 2,578,178 - ABZR87_RS12165 0.21 -1.2 2,578,178 - ABZR87_RS12165 0.21 -1.3 2,578,207 + ABZR87_RS12165 0.23 -1.6 2,578,217 - ABZR87_RS12165 0.23 -1.3 2,578,225 + ABZR87_RS12165 0.24 -0.3 2,578,226 - ABZR87_RS12165 0.24 +0.7 2,578,226 - ABZR87_RS12165 0.24 +0.9 2,578,226 - ABZR87_RS12165 0.24 -0.4 2,578,519 + ABZR87_RS12165 0.42 -1.3 2,578,538 - ABZR87_RS12165 0.43 +0.0 2,578,549 + ABZR87_RS12165 0.44 -0.6 2,578,558 + ABZR87_RS12165 0.44 +0.5 2,578,559 - ABZR87_RS12165 0.44 +0.7 2,578,825 + ABZR87_RS12165 0.61 -0.0 2,578,825 + ABZR87_RS12165 0.61 -1.0 2,578,825 + ABZR87_RS12165 0.61 -1.1 2,578,825 + ABZR87_RS12165 0.61 -1.8 2,578,826 - ABZR87_RS12165 0.61 -1.2 2,579,020 + ABZR87_RS12165 0.73 -0.1 2,579,039 - ABZR87_RS12165 0.74 -1.9 2,579,039 - ABZR87_RS12165 0.74 -0.7 2,579,426 - -1.7 2,579,434 + -0.3 2,579,435 - -0.7 2,579,435 - +1.3 2,579,435 - +0.4 2,579,623 + +0.6 2,579,623 + +0.8 2,579,624 - -0.0 2,579,638 + +1.2 2,579,638 + -0.2 2,579,639 - -0.4 2,579,639 - +0.4 2,579,718 + -1.0 2,579,719 - -1.4 2,579,745 - -0.6 2,579,745 - +0.2 2,579,745 - +0.0 2,579,745 - +2.9 2,579,965 + ABZR87_RS12170 0.15 +1.0 2,579,966 - ABZR87_RS12170 0.15 +5.6 2,580,272 + ABZR87_RS12170 0.35 +0.2 2,580,273 - ABZR87_RS12170 0.35 +0.7 2,580,348 + ABZR87_RS12170 0.40 -1.8 2,580,348 + ABZR87_RS12170 0.40 -1.3 2,580,348 + ABZR87_RS12170 0.40 -0.3 2,580,348 + ABZR87_RS12170 0.40 +0.7 2,580,348 + ABZR87_RS12170 0.40 +0.2 2,580,348 + ABZR87_RS12170 0.40 -1.1 2,580,348 + ABZR87_RS12170 0.40 +1.8 2,580,348 + ABZR87_RS12170 0.40 +0.4 2,580,349 - ABZR87_RS12170 0.40 +0.1 2,580,349 - ABZR87_RS12170 0.40 -1.5 2,580,349 - ABZR87_RS12170 0.40 -0.9 2,580,349 - ABZR87_RS12170 0.40 -0.7 2,580,349 - ABZR87_RS12170 0.40 +1.0 2,580,349 - ABZR87_RS12170 0.40 -0.5 2,580,349 - ABZR87_RS12170 0.40 -1.0 2,580,350 + ABZR87_RS12170 0.40 +0.7 2,580,350 + ABZR87_RS12170 0.40 +0.9 2,580,351 - ABZR87_RS12170 0.40 -1.3 2,580,351 - ABZR87_RS12170 0.40 -0.0 2,580,432 - ABZR87_RS12170 0.45 -0.3
Or see this region's nucleotide sequence