Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12165

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12160 and ABZR87_RS12165 are separated by 112 nucleotidesABZR87_RS12165 and ABZR87_RS12170 are separated by 269 nucleotides ABZR87_RS12160: ABZR87_RS12160 - muramoyltetrapeptide carboxypeptidase, at 2,576,802 to 2,577,728 _RS12160 ABZR87_RS12165: ABZR87_RS12165 - ABC-F family ATPase, at 2,577,841 to 2,579,463 _RS12165 ABZR87_RS12170: ABZR87_RS12170 - acetyl-CoA hydrolase/transferase family protein, at 2,579,733 to 2,581,280 _RS12170 Position (kb) 2577 2578 2579 2580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2577.726 kb on + strandat 2577.726 kb on + strandat 2577.727 kb on - strandat 2577.928 kb on + strandat 2578.066 kb on + strand, within ABZR87_RS12165at 2578.067 kb on - strand, within ABZR87_RS12165at 2578.147 kb on + strand, within ABZR87_RS12165at 2578.147 kb on + strand, within ABZR87_RS12165at 2578.148 kb on - strand, within ABZR87_RS12165at 2578.148 kb on - strand, within ABZR87_RS12165at 2578.148 kb on - strand, within ABZR87_RS12165at 2578.148 kb on - strand, within ABZR87_RS12165at 2578.177 kb on + strand, within ABZR87_RS12165at 2578.178 kb on - strand, within ABZR87_RS12165at 2578.178 kb on - strand, within ABZR87_RS12165at 2578.178 kb on - strand, within ABZR87_RS12165at 2578.178 kb on - strand, within ABZR87_RS12165at 2578.207 kb on + strand, within ABZR87_RS12165at 2578.217 kb on - strand, within ABZR87_RS12165at 2578.225 kb on + strand, within ABZR87_RS12165at 2578.226 kb on - strand, within ABZR87_RS12165at 2578.226 kb on - strand, within ABZR87_RS12165at 2578.226 kb on - strand, within ABZR87_RS12165at 2578.519 kb on + strand, within ABZR87_RS12165at 2578.538 kb on - strand, within ABZR87_RS12165at 2578.549 kb on + strand, within ABZR87_RS12165at 2578.558 kb on + strand, within ABZR87_RS12165at 2578.559 kb on - strand, within ABZR87_RS12165at 2578.825 kb on + strand, within ABZR87_RS12165at 2578.825 kb on + strand, within ABZR87_RS12165at 2578.825 kb on + strand, within ABZR87_RS12165at 2578.825 kb on + strand, within ABZR87_RS12165at 2578.826 kb on - strand, within ABZR87_RS12165at 2579.020 kb on + strand, within ABZR87_RS12165at 2579.039 kb on - strand, within ABZR87_RS12165at 2579.039 kb on - strand, within ABZR87_RS12165at 2579.426 kb on - strandat 2579.434 kb on + strandat 2579.435 kb on - strandat 2579.435 kb on - strandat 2579.435 kb on - strandat 2579.623 kb on + strandat 2579.623 kb on + strandat 2579.624 kb on - strandat 2579.638 kb on + strandat 2579.638 kb on + strandat 2579.639 kb on - strandat 2579.639 kb on - strandat 2579.718 kb on + strandat 2579.719 kb on - strandat 2579.745 kb on - strandat 2579.745 kb on - strandat 2579.745 kb on - strandat 2579.745 kb on - strandat 2579.965 kb on + strand, within ABZR87_RS12170at 2579.966 kb on - strand, within ABZR87_RS12170at 2580.272 kb on + strand, within ABZR87_RS12170at 2580.273 kb on - strand, within ABZR87_RS12170at 2580.348 kb on + strand, within ABZR87_RS12170at 2580.348 kb on + strand, within ABZR87_RS12170at 2580.348 kb on + strand, within ABZR87_RS12170at 2580.348 kb on + strand, within ABZR87_RS12170at 2580.348 kb on + strand, within ABZR87_RS12170at 2580.348 kb on + strand, within ABZR87_RS12170at 2580.348 kb on + strand, within ABZR87_RS12170at 2580.348 kb on + strand, within ABZR87_RS12170at 2580.349 kb on - strand, within ABZR87_RS12170at 2580.349 kb on - strand, within ABZR87_RS12170at 2580.349 kb on - strand, within ABZR87_RS12170at 2580.349 kb on - strand, within ABZR87_RS12170at 2580.349 kb on - strand, within ABZR87_RS12170at 2580.349 kb on - strand, within ABZR87_RS12170at 2580.349 kb on - strand, within ABZR87_RS12170at 2580.350 kb on + strand, within ABZR87_RS12170at 2580.350 kb on + strand, within ABZR87_RS12170at 2580.351 kb on - strand, within ABZR87_RS12170at 2580.351 kb on - strand, within ABZR87_RS12170at 2580.432 kb on - strand, within ABZR87_RS12170

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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2,577,726 + +0.7
2,577,726 + -0.0
2,577,727 - -0.7
2,577,928 + -1.3
2,578,066 + ABZR87_RS12165 0.14 -1.6
2,578,067 - ABZR87_RS12165 0.14 -0.8
2,578,147 + ABZR87_RS12165 0.19 -0.3
2,578,147 + ABZR87_RS12165 0.19 -2.9
2,578,148 - ABZR87_RS12165 0.19 +0.9
2,578,148 - ABZR87_RS12165 0.19 -1.3
2,578,148 - ABZR87_RS12165 0.19 -1.4
2,578,148 - ABZR87_RS12165 0.19 -2.5
2,578,177 + ABZR87_RS12165 0.21 -0.9
2,578,178 - ABZR87_RS12165 0.21 -1.6
2,578,178 - ABZR87_RS12165 0.21 +1.4
2,578,178 - ABZR87_RS12165 0.21 -1.2
2,578,178 - ABZR87_RS12165 0.21 -1.3
2,578,207 + ABZR87_RS12165 0.23 -1.6
2,578,217 - ABZR87_RS12165 0.23 -1.3
2,578,225 + ABZR87_RS12165 0.24 -0.3
2,578,226 - ABZR87_RS12165 0.24 +0.7
2,578,226 - ABZR87_RS12165 0.24 +0.9
2,578,226 - ABZR87_RS12165 0.24 -0.4
2,578,519 + ABZR87_RS12165 0.42 -1.3
2,578,538 - ABZR87_RS12165 0.43 +0.0
2,578,549 + ABZR87_RS12165 0.44 -0.6
2,578,558 + ABZR87_RS12165 0.44 +0.5
2,578,559 - ABZR87_RS12165 0.44 +0.7
2,578,825 + ABZR87_RS12165 0.61 -0.0
2,578,825 + ABZR87_RS12165 0.61 -1.0
2,578,825 + ABZR87_RS12165 0.61 -1.1
2,578,825 + ABZR87_RS12165 0.61 -1.8
2,578,826 - ABZR87_RS12165 0.61 -1.2
2,579,020 + ABZR87_RS12165 0.73 -0.1
2,579,039 - ABZR87_RS12165 0.74 -1.9
2,579,039 - ABZR87_RS12165 0.74 -0.7
2,579,426 - -1.7
2,579,434 + -0.3
2,579,435 - -0.7
2,579,435 - +1.3
2,579,435 - +0.4
2,579,623 + +0.6
2,579,623 + +0.8
2,579,624 - -0.0
2,579,638 + +1.2
2,579,638 + -0.2
2,579,639 - -0.4
2,579,639 - +0.4
2,579,718 + -1.0
2,579,719 - -1.4
2,579,745 - -0.6
2,579,745 - +0.2
2,579,745 - +0.0
2,579,745 - +2.9
2,579,965 + ABZR87_RS12170 0.15 +1.0
2,579,966 - ABZR87_RS12170 0.15 +5.6
2,580,272 + ABZR87_RS12170 0.35 +0.2
2,580,273 - ABZR87_RS12170 0.35 +0.7
2,580,348 + ABZR87_RS12170 0.40 -1.8
2,580,348 + ABZR87_RS12170 0.40 -1.3
2,580,348 + ABZR87_RS12170 0.40 -0.3
2,580,348 + ABZR87_RS12170 0.40 +0.7
2,580,348 + ABZR87_RS12170 0.40 +0.2
2,580,348 + ABZR87_RS12170 0.40 -1.1
2,580,348 + ABZR87_RS12170 0.40 +1.8
2,580,348 + ABZR87_RS12170 0.40 +0.4
2,580,349 - ABZR87_RS12170 0.40 +0.1
2,580,349 - ABZR87_RS12170 0.40 -1.5
2,580,349 - ABZR87_RS12170 0.40 -0.9
2,580,349 - ABZR87_RS12170 0.40 -0.7
2,580,349 - ABZR87_RS12170 0.40 +1.0
2,580,349 - ABZR87_RS12170 0.40 -0.5
2,580,349 - ABZR87_RS12170 0.40 -1.0
2,580,350 + ABZR87_RS12170 0.40 +0.7
2,580,350 + ABZR87_RS12170 0.40 +0.9
2,580,351 - ABZR87_RS12170 0.40 -1.3
2,580,351 - ABZR87_RS12170 0.40 -0.0
2,580,432 - ABZR87_RS12170 0.45 -0.3

Or see this region's nucleotide sequence