Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10960

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10955 and ABZR87_RS10960 are separated by 76 nucleotidesABZR87_RS10960 and ABZR87_RS10965 are separated by 58 nucleotides ABZR87_RS10955: ABZR87_RS10955 - protease modulator HflC, at 2,320,629 to 2,321,543 _RS10955 ABZR87_RS10960: ABZR87_RS10960 - DUF2065 domain-containing protein, at 2,321,620 to 2,321,820 _RS10960 ABZR87_RS10965: ABZR87_RS10965 - ATP phosphoribosyltransferase regulatory subunit, at 2,321,879 to 2,323,042 _RS10965 Position (kb) 2321 2322Strain fitness (log2 ratio) -3 -2 -1 0 1at 2320.629 kb on - strandat 2320.629 kb on - strandat 2320.629 kb on - strandat 2320.693 kb on + strandat 2320.693 kb on + strandat 2320.694 kb on - strandat 2320.694 kb on - strandat 2320.716 kb on + strandat 2320.717 kb on - strandat 2320.818 kb on - strand, within ABZR87_RS10955at 2320.933 kb on - strand, within ABZR87_RS10955at 2320.933 kb on - strand, within ABZR87_RS10955at 2320.933 kb on - strand, within ABZR87_RS10955at 2320.933 kb on - strand, within ABZR87_RS10955at 2321.091 kb on + strand, within ABZR87_RS10955at 2321.092 kb on - strand, within ABZR87_RS10955at 2321.092 kb on - strand, within ABZR87_RS10955at 2321.092 kb on - strand, within ABZR87_RS10955at 2321.092 kb on - strand, within ABZR87_RS10955at 2321.110 kb on + strand, within ABZR87_RS10955at 2321.172 kb on + strand, within ABZR87_RS10955at 2321.173 kb on - strand, within ABZR87_RS10955at 2321.195 kb on + strand, within ABZR87_RS10955at 2321.195 kb on + strand, within ABZR87_RS10955at 2321.296 kb on - strand, within ABZR87_RS10955at 2321.345 kb on + strand, within ABZR87_RS10955at 2321.345 kb on + strand, within ABZR87_RS10955at 2321.345 kb on + strand, within ABZR87_RS10955at 2321.346 kb on - strand, within ABZR87_RS10955at 2321.346 kb on - strand, within ABZR87_RS10955at 2321.346 kb on - strand, within ABZR87_RS10955at 2321.349 kb on + strand, within ABZR87_RS10955at 2321.349 kb on + strand, within ABZR87_RS10955at 2321.350 kb on - strand, within ABZR87_RS10955at 2321.409 kb on + strand, within ABZR87_RS10955at 2321.475 kb on + strandat 2321.475 kb on + strandat 2321.476 kb on - strandat 2321.476 kb on - strandat 2321.476 kb on - strandat 2321.541 kb on + strandat 2321.541 kb on + strandat 2321.542 kb on - strandat 2321.542 kb on - strandat 2321.544 kb on + strandat 2321.544 kb on + strandat 2321.544 kb on + strandat 2321.545 kb on - strandat 2321.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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2,320,629 - +0.2
2,320,629 - -0.0
2,320,629 - -0.2
2,320,693 + +0.5
2,320,693 + +0.2
2,320,694 - -0.5
2,320,694 - +0.6
2,320,716 + -1.2
2,320,717 - -1.1
2,320,818 - ABZR87_RS10955 0.21 -2.3
2,320,933 - ABZR87_RS10955 0.33 -3.0
2,320,933 - ABZR87_RS10955 0.33 +0.3
2,320,933 - ABZR87_RS10955 0.33 -0.2
2,320,933 - ABZR87_RS10955 0.33 -1.0
2,321,091 + ABZR87_RS10955 0.50 -1.5
2,321,092 - ABZR87_RS10955 0.51 +0.8
2,321,092 - ABZR87_RS10955 0.51 -1.2
2,321,092 - ABZR87_RS10955 0.51 +0.3
2,321,092 - ABZR87_RS10955 0.51 -1.1
2,321,110 + ABZR87_RS10955 0.53 -1.7
2,321,172 + ABZR87_RS10955 0.59 -0.5
2,321,173 - ABZR87_RS10955 0.59 -0.6
2,321,195 + ABZR87_RS10955 0.62 -0.9
2,321,195 + ABZR87_RS10955 0.62 -1.9
2,321,296 - ABZR87_RS10955 0.73 -1.7
2,321,345 + ABZR87_RS10955 0.78 +0.3
2,321,345 + ABZR87_RS10955 0.78 -0.0
2,321,345 + ABZR87_RS10955 0.78 -1.7
2,321,346 - ABZR87_RS10955 0.78 +0.5
2,321,346 - ABZR87_RS10955 0.78 -1.1
2,321,346 - ABZR87_RS10955 0.78 -1.2
2,321,349 + ABZR87_RS10955 0.79 -0.1
2,321,349 + ABZR87_RS10955 0.79 +0.8
2,321,350 - ABZR87_RS10955 0.79 -0.7
2,321,409 + ABZR87_RS10955 0.85 -0.7
2,321,475 + -0.9
2,321,475 + +0.1
2,321,476 - -2.0
2,321,476 - -0.1
2,321,476 - -1.7
2,321,541 + +1.3
2,321,541 + -2.3
2,321,542 - -0.7
2,321,542 - +0.1
2,321,544 + -1.1
2,321,544 + -0.9
2,321,544 + -0.2
2,321,545 - -1.8
2,321,545 - -1.1

Or see this region's nucleotide sequence