Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10880

Experiment: root sample 5; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root sample 5; outgrowth in LB
2,303,205	+		ABZR87_RS10875	0.28	+0.9
2,303,206	-		ABZR87_RS10875	0.29	+0.2
2,303,206	-		ABZR87_RS10875	0.29	+1.1
2,303,457	+		ABZR87_RS10875	0.51	+2.7
2,303,457	+		ABZR87_RS10875	0.51	+1.2
2,303,457	+		ABZR87_RS10875	0.51	+0.9
2,303,457	+		ABZR87_RS10875	0.51	+1.2
2,303,457	+		ABZR87_RS10875	0.51	+0.7
2,303,457	+		ABZR87_RS10875	0.51	+2.1
2,303,457	+		ABZR87_RS10875	0.51	-0.6
2,303,457	+		ABZR87_RS10875	0.51	+3.5
2,303,458	-		ABZR87_RS10875	0.51	+0.6
2,303,458	-		ABZR87_RS10875	0.51	+1.3
2,303,458	-		ABZR87_RS10875	0.51	+0.0
2,303,458	-		ABZR87_RS10875	0.51	+0.5
2,303,458	-		ABZR87_RS10875	0.51	+2.0
2,303,458	-		ABZR87_RS10875	0.51	-0.4
2,303,458	-		ABZR87_RS10875	0.51	+1.1
2,303,458	-		ABZR87_RS10875	0.51	+1.3
2,303,458	-		ABZR87_RS10875	0.51	+0.8
2,303,458	-		ABZR87_RS10875	0.51	+0.5
2,303,514	-		ABZR87_RS10875	0.56	+1.1
2,303,514	-		ABZR87_RS10875	0.56	+0.4
2,303,514	-		ABZR87_RS10875	0.56	+1.1
2,303,699	+		ABZR87_RS10875	0.72	+1.9
2,303,699	+		ABZR87_RS10875	0.72	-0.4
2,303,844	+		ABZR87_RS10875	0.85	+0.8
2,303,844	+		ABZR87_RS10875	0.85	+0.5
2,303,845	-		ABZR87_RS10875	0.85	+0.2
2,303,845	-		ABZR87_RS10875	0.85	+1.3
2,303,845	-		ABZR87_RS10875	0.85	+1.1
2,303,845	-		ABZR87_RS10875	0.85	+0.8
2,303,848	+		ABZR87_RS10875	0.85	+0.3
2,303,849	-		ABZR87_RS10875	0.85	+0.7
2,303,849	-		ABZR87_RS10875	0.85	+0.4
2,303,874	+		ABZR87_RS10875	0.87	+2.2
2,303,874	+		ABZR87_RS10875	0.87	+0.0
2,303,874	+		ABZR87_RS10875	0.87	-0.6
2,303,874	+		ABZR87_RS10875	0.87	+0.6
2,303,875	-		ABZR87_RS10875	0.87	+1.3
2,303,875	-		ABZR87_RS10875	0.87	+0.8
2,303,875	-		ABZR87_RS10875	0.87	+1.2
2,303,875	-		ABZR87_RS10875	0.87	-0.1
2,303,875	-		ABZR87_RS10875	0.87	+0.2
2,303,875	-		ABZR87_RS10875	0.87	+3.2
2,303,875	-		ABZR87_RS10875	0.87	+1.0
2,303,875	-		ABZR87_RS10875	0.87	+1.0
2,304,000	-				+1.2
2,304,016	-				+1.3
2,304,176	+		ABZR87_RS10880	0.14	+1.0
2,304,265	+		ABZR87_RS10880	0.24	+0.1
2,304,265	+		ABZR87_RS10880	0.24	-0.6
2,304,265	+		ABZR87_RS10880	0.24	-0.0
2,304,265	+		ABZR87_RS10880	0.24	-0.4
2,304,266	-		ABZR87_RS10880	0.24	+0.1
2,304,266	-		ABZR87_RS10880	0.24	+4.5
2,304,266	-		ABZR87_RS10880	0.24	-0.4
2,304,491	+		ABZR87_RS10880	0.50	+1.6
2,304,492	-		ABZR87_RS10880	0.51	+0.5
2,304,494	+		ABZR87_RS10880	0.51	-2.0
2,304,495	-		ABZR87_RS10880	0.51	+1.3
2,304,495	-		ABZR87_RS10880	0.51	+1.0
2,304,570	+		ABZR87_RS10880	0.60	-1.1
2,304,570	+		ABZR87_RS10880	0.60	-1.4
2,304,570	+		ABZR87_RS10880	0.60	-2.4
2,304,570	+		ABZR87_RS10880	0.60	-0.4
2,304,571	-		ABZR87_RS10880	0.60	-1.3
2,304,571	-		ABZR87_RS10880	0.60	-1.2
2,304,571	-		ABZR87_RS10880	0.60	-0.0
2,304,572	+		ABZR87_RS10880	0.60	+0.2
2,304,572	+		ABZR87_RS10880	0.60	-1.6
2,304,572	+		ABZR87_RS10880	0.60	-0.2
2,304,572	+		ABZR87_RS10880	0.60	+0.3
2,304,572	+		ABZR87_RS10880	0.60	-1.5
2,304,572	+		ABZR87_RS10880	0.60	+0.5
2,304,572	+		ABZR87_RS10880	0.60	-0.4
2,304,572	+		ABZR87_RS10880	0.60	-0.1
2,304,572	+		ABZR87_RS10880	0.60	-0.7
2,304,572	+		ABZR87_RS10880	0.60	-0.0
2,304,572	+		ABZR87_RS10880	0.60	-0.7
2,304,572	+		ABZR87_RS10880	0.60	-0.7
2,304,572	+		ABZR87_RS10880	0.60	-0.3
2,304,572	+		ABZR87_RS10880	0.60	-2.0
2,304,573	-		ABZR87_RS10880	0.60	-1.3
2,304,573	-		ABZR87_RS10880	0.60	+4.4
2,304,573	-		ABZR87_RS10880	0.60	-2.1
2,304,573	-		ABZR87_RS10880	0.60	+0.6
2,304,573	-		ABZR87_RS10880	0.60	-2.1
2,304,573	-		ABZR87_RS10880	0.60	-0.7
2,304,573	-		ABZR87_RS10880	0.60	-0.1
2,304,573	-		ABZR87_RS10880	0.60	-1.9
2,304,573	-		ABZR87_RS10880	0.60	+0.7
2,304,573	-		ABZR87_RS10880	0.60	-2.0
2,304,573	-		ABZR87_RS10880	0.60	-0.7
2,304,573	-		ABZR87_RS10880	0.60	-0.6
2,304,573	-		ABZR87_RS10880	0.60	+0.3
2,304,573	-		ABZR87_RS10880	0.60	-0.7
2,304,573	-		ABZR87_RS10880	0.60	+0.8
2,304,573	-		ABZR87_RS10880	0.60	-0.5
2,304,573	-		ABZR87_RS10880	0.60	+2.1
2,304,573	-		ABZR87_RS10880	0.60	-1.6
2,304,598	+		ABZR87_RS10880	0.63	-0.3
2,304,599	-		ABZR87_RS10880	0.63	+0.0
2,304,599	-		ABZR87_RS10880	0.63	-1.4
2,304,599	-		ABZR87_RS10880	0.63	+1.3
2,304,599	-		ABZR87_RS10880	0.63	+0.4
2,304,710	+		ABZR87_RS10880	0.76	-2.7
2,304,710	+		ABZR87_RS10880	0.76	-0.1
2,304,710	+		ABZR87_RS10880	0.76	-0.3
2,304,711	-		ABZR87_RS10880	0.76	-0.4
2,304,711	-		ABZR87_RS10880	0.76	-0.9
2,304,937	+				+0.7
2,304,937	+				-0.2
2,304,937	+				+0.3
2,304,937	+				+1.4
2,304,937	+				+0.1
2,304,937	+				+0.0
2,304,937	+				-0.7
2,304,937	+				+0.2
2,304,937	+				-1.7
2,304,938	-				-0.3
2,304,938	-				-0.2
2,304,938	-				-2.4
2,304,938	-				-1.2
2,304,938	-				-0.2
2,304,938	-				+0.6
2,304,994	+				-1.3
2,304,995	-				+1.9
2,304,995	-				+0.1
2,304,995	-				+1.3
2,304,995	-				+1.5
2,305,052	-				+0.0
2,305,070	-				-1.1
2,305,070	-				-1.3
2,305,070	-				+1.2
2,305,214	+				-0.5
2,305,214	+				-2.5
2,305,214	+				-1.4
2,305,215	-		ABZR87_RS10885	0.10	-0.4
2,305,215	-		ABZR87_RS10885	0.10	+0.2
2,305,215	-		ABZR87_RS10885	0.10	-2.9
2,305,242	-		ABZR87_RS10885	0.12	+3.6
2,305,265	-		ABZR87_RS10885	0.14	-0.3
2,305,265	-		ABZR87_RS10885	0.14	-1.0
2,305,265	-		ABZR87_RS10885	0.14	-0.8
2,305,265	-		ABZR87_RS10885	0.14	+1.0
2,305,460	+		ABZR87_RS10885	0.28	-0.9
2,305,544	+		ABZR87_RS10885	0.34	+1.9
2,305,544	+		ABZR87_RS10885	0.34	+0.1
2,305,544	+		ABZR87_RS10885	0.34	+1.8
2,305,544	+		ABZR87_RS10885	0.34	+1.8
2,305,544	+		ABZR87_RS10885	0.34	+1.6
2,305,544	+		ABZR87_RS10885	0.34	-2.4
2,305,544	+		ABZR87_RS10885	0.34	+0.6
2,305,544	+		ABZR87_RS10885	0.34	-0.3
2,305,544	+		ABZR87_RS10885	0.34	-1.4
2,305,545	-		ABZR87_RS10885	0.34	+1.4
2,305,545	-		ABZR87_RS10885	0.34	+1.3
2,305,545	-		ABZR87_RS10885	0.34	-0.9
2,305,545	-		ABZR87_RS10885	0.34	-0.3
2,305,587	+		ABZR87_RS10885	0.38	-0.1
2,305,587	+		ABZR87_RS10885	0.38	-1.0
2,305,587	+		ABZR87_RS10885	0.38	-0.4
2,305,588	-		ABZR87_RS10885	0.38	-1.0
2,305,588	-		ABZR87_RS10885	0.38	+0.2
2,305,645	+		ABZR87_RS10885	0.42	-1.9
2,305,645	+		ABZR87_RS10885	0.42	+0.8
2,305,645	+		ABZR87_RS10885	0.42	-0.3
2,305,645	+		ABZR87_RS10885	0.42	-1.5
2,305,645	+		ABZR87_RS10885	0.42	+0.1
2,305,646	-		ABZR87_RS10885	0.42	-0.5
2,305,646	-		ABZR87_RS10885	0.42	+0.6
2,305,693	-		ABZR87_RS10885	0.45	+0.3
2,305,693	-		ABZR87_RS10885	0.45	+0.3
2,305,803	-		ABZR87_RS10885	0.54	+0.6
2,305,803	-		ABZR87_RS10885	0.54	-0.5
2,305,835	+		ABZR87_RS10885	0.56	+1.3
2,305,835	+		ABZR87_RS10885	0.56	+0.3
2,305,836	-		ABZR87_RS10885	0.56	-1.6
2,305,836	-		ABZR87_RS10885	0.56	-0.3
2,305,836	-		ABZR87_RS10885	0.56	+0.1