Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09230

Experiment: root sample 5; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root sample 5; outgrowth in LB
1,950,267	+		ABZR87_RS09220	0.68	-0.5
1,950,267	+		ABZR87_RS09220	0.68	+1.1
1,950,283	-		ABZR87_RS09220	0.73	-1.6
1,950,283	-		ABZR87_RS09220	0.73	-0.5
1,950,283	-		ABZR87_RS09220	0.73	+1.2
1,950,298	-		ABZR87_RS09220	0.77	+1.4
1,950,298	-		ABZR87_RS09220	0.77	-0.6
1,950,298	-		ABZR87_RS09220	0.77	-0.9
1,950,298	-		ABZR87_RS09220	0.77	-0.5
1,950,298	-		ABZR87_RS09220	0.77	-1.9
1,950,345	+				+1.5
1,950,345	+				-2.5
1,950,345	+				+0.2
1,950,346	-				+1.4
1,950,346	-				+0.9
1,950,346	-				-2.0
1,950,578	+		ABZR87_RS09225	0.28	+0.3
1,950,578	+		ABZR87_RS09225	0.28	+0.8
1,950,579	-		ABZR87_RS09225	0.29	-2.2
1,950,579	-		ABZR87_RS09225	0.29	-0.9
1,950,579	-		ABZR87_RS09225	0.29	+0.1
1,950,651	+		ABZR87_RS09225	0.42	-0.9
1,950,651	+		ABZR87_RS09225	0.42	-2.2
1,950,651	+		ABZR87_RS09225	0.42	-0.6
1,950,651	+		ABZR87_RS09225	0.42	+0.1
1,950,651	+		ABZR87_RS09225	0.42	-1.3
1,950,651	+		ABZR87_RS09225	0.42	-1.8
1,950,651	+		ABZR87_RS09225	0.42	-0.4
1,950,652	-		ABZR87_RS09225	0.42	+2.0
1,950,652	-		ABZR87_RS09225	0.42	+1.2
1,950,653	+		ABZR87_RS09225	0.42	-1.6
1,950,653	+		ABZR87_RS09225	0.42	-0.8
1,950,653	+		ABZR87_RS09225	0.42	-1.1
1,950,653	+		ABZR87_RS09225	0.42	+0.4
1,950,653	+		ABZR87_RS09225	0.42	-1.8
1,950,653	+		ABZR87_RS09225	0.42	-1.1
1,950,653	+		ABZR87_RS09225	0.42	-1.4
1,950,653	+		ABZR87_RS09225	0.42	-2.9
1,950,653	+		ABZR87_RS09225	0.42	+1.2
1,950,653	+		ABZR87_RS09225	0.42	-1.8
1,950,653	+		ABZR87_RS09225	0.42	-0.7
1,950,653	+		ABZR87_RS09225	0.42	+0.2
1,950,653	+		ABZR87_RS09225	0.42	-1.4
1,950,653	+		ABZR87_RS09225	0.42	+0.1
1,950,653	+		ABZR87_RS09225	0.42	+2.2
1,950,653	+		ABZR87_RS09225	0.42	+0.0
1,950,653	+		ABZR87_RS09225	0.42	-0.2
1,950,653	+		ABZR87_RS09225	0.42	+0.4
1,950,653	+		ABZR87_RS09225	0.42	-0.8
1,950,653	+		ABZR87_RS09225	0.42	+0.9
1,950,654	-		ABZR87_RS09225	0.42	-1.5
1,950,654	-		ABZR87_RS09225	0.42	-2.1
1,950,654	-		ABZR87_RS09225	0.42	-0.3
1,950,654	-		ABZR87_RS09225	0.42	-0.4
1,950,654	-		ABZR87_RS09225	0.42	+0.0
1,950,654	-		ABZR87_RS09225	0.42	+1.9
1,950,654	-		ABZR87_RS09225	0.42	-0.3
1,950,654	-		ABZR87_RS09225	0.42	-0.3
1,950,654	-		ABZR87_RS09225	0.42	-1.0
1,950,654	-		ABZR87_RS09225	0.42	-0.7
1,950,657	+		ABZR87_RS09225	0.43	-1.0
1,950,657	+		ABZR87_RS09225	0.43	-0.5
1,950,657	+		ABZR87_RS09225	0.43	-0.2
1,950,657	+		ABZR87_RS09225	0.43	-1.1
1,950,657	+		ABZR87_RS09225	0.43	-0.0
1,950,657	+		ABZR87_RS09225	0.43	+0.6
1,950,657	+		ABZR87_RS09225	0.43	-0.7
1,950,657	+		ABZR87_RS09225	0.43	-0.6
1,950,657	+		ABZR87_RS09225	0.43	-1.1
1,950,657	+		ABZR87_RS09225	0.43	-1.3
1,950,657	+		ABZR87_RS09225	0.43	+1.9
1,950,657	+		ABZR87_RS09225	0.43	+0.8
1,950,657	+		ABZR87_RS09225	0.43	+0.4
1,950,657	+		ABZR87_RS09225	0.43	+0.6
1,950,657	+		ABZR87_RS09225	0.43	-0.4
1,950,657	+		ABZR87_RS09225	0.43	-2.6
1,950,658	-		ABZR87_RS09225	0.43	-2.2
1,950,658	-		ABZR87_RS09225	0.43	+1.0
1,950,658	-		ABZR87_RS09225	0.43	+0.4
1,950,658	-		ABZR87_RS09225	0.43	-0.3
1,950,658	-		ABZR87_RS09225	0.43	-0.6
1,950,658	-		ABZR87_RS09225	0.43	-2.3
1,950,658	-		ABZR87_RS09225	0.43	-0.9
1,950,658	-		ABZR87_RS09225	0.43	+1.7
1,950,658	-		ABZR87_RS09225	0.43	-0.3
1,950,658	-		ABZR87_RS09225	0.43	-1.2
1,950,658	-		ABZR87_RS09225	0.43	-1.0
1,950,658	-		ABZR87_RS09225	0.43	+0.9
1,950,658	-		ABZR87_RS09225	0.43	+0.7
1,950,658	-		ABZR87_RS09225	0.43	+1.6
1,950,658	-		ABZR87_RS09225	0.43	-0.9
1,950,658	-		ABZR87_RS09225	0.43	+0.2
1,950,658	-		ABZR87_RS09225	0.43	+0.2
1,950,658	-		ABZR87_RS09225	0.43	-0.5
1,950,658	-		ABZR87_RS09225	0.43	+0.1
1,950,659	+		ABZR87_RS09225	0.43	-2.0
1,950,660	-		ABZR87_RS09225	0.43	+0.9
1,950,908	+		ABZR87_RS09225	0.88	+1.5
1,950,908	+		ABZR87_RS09225	0.88	+0.3
1,950,909	-		ABZR87_RS09225	0.88	-1.4
1,950,909	-		ABZR87_RS09225	0.88	-0.3
1,950,909	-		ABZR87_RS09225	0.88	-1.9
1,950,909	-		ABZR87_RS09225	0.88	-1.3
1,950,911	+		ABZR87_RS09225	0.89	-0.2
1,950,912	-		ABZR87_RS09225	0.89	-0.6
1,950,912	-		ABZR87_RS09225	0.89	-1.1
1,950,950	+				-0.2
1,950,950	+				+1.0
1,950,950	+				-0.1
1,950,950	+				-0.1
1,950,951	-				+0.4
1,950,951	-				-1.8
1,950,951	-				+1.6
1,950,951	-				-1.1
1,950,951	-				-0.8
1,950,951	-				+1.5
1,950,951	-				-2.1
1,951,082	+				-0.4
1,951,082	+				-0.0
1,951,082	+				+1.2
1,951,082	+				+0.3
1,951,082	+				-0.4
1,951,083	-				+1.6
1,951,083	-				-1.8
1,951,156	-				-0.1
1,951,256	+				-0.6
1,951,256	+				-1.0
1,951,256	+				-0.3
1,951,257	-				+0.8
1,951,257	-				-0.2
1,951,257	-				-0.2
1,951,257	-				-2.1
1,951,257	-				+0.3
1,951,769	+		ABZR87_RS09230	0.22	+0.1
1,951,770	-		ABZR87_RS09230	0.22	+0.9
1,951,880	+		ABZR87_RS09230	0.25	+0.1
1,951,881	-		ABZR87_RS09230	0.25	+0.4
1,951,919	+		ABZR87_RS09230	0.27	+2.4
1,951,919	+		ABZR87_RS09230	0.27	-0.7
1,951,919	+		ABZR87_RS09230	0.27	+1.0
1,951,919	+		ABZR87_RS09230	0.27	+0.7
1,951,920	-		ABZR87_RS09230	0.27	-0.0
1,952,126	+		ABZR87_RS09230	0.34	-1.0
1,952,126	+		ABZR87_RS09230	0.34	+0.6
1,952,127	-		ABZR87_RS09230	0.34	-1.2
1,952,127	-		ABZR87_RS09230	0.34	+0.7
1,952,127	-		ABZR87_RS09230	0.34	-1.0
1,952,129	+		ABZR87_RS09230	0.34	-0.5
1,952,129	+		ABZR87_RS09230	0.34	+0.8
1,952,129	+		ABZR87_RS09230	0.34	-0.3
1,952,130	-		ABZR87_RS09230	0.34	-1.2
1,952,130	-		ABZR87_RS09230	0.34	-0.6
1,952,209	+		ABZR87_RS09230	0.37	-0.6
1,952,209	-		ABZR87_RS09230	0.37	-0.2
1,952,303	+		ABZR87_RS09230	0.40	+0.3
1,952,303	+		ABZR87_RS09230	0.40	+0.5
1,952,303	+		ABZR87_RS09230	0.40	+0.2
1,952,303	+		ABZR87_RS09230	0.40	+0.5
1,952,303	+		ABZR87_RS09230	0.40	-1.9
1,952,303	+		ABZR87_RS09230	0.40	+0.0
1,952,303	+		ABZR87_RS09230	0.40	-0.2
1,952,303	+		ABZR87_RS09230	0.40	+3.0
1,952,303	+		ABZR87_RS09230	0.40	+2.2
1,952,303	+		ABZR87_RS09230	0.40	+0.7
1,952,303	+		ABZR87_RS09230	0.40	-0.4
1,952,303	+		ABZR87_RS09230	0.40	+0.4
1,952,303	+		ABZR87_RS09230	0.40	+0.1
1,952,303	+		ABZR87_RS09230	0.40	-0.1
1,952,303	+		ABZR87_RS09230	0.40	-1.3
1,952,304	-		ABZR87_RS09230	0.40	-0.5
1,952,304	-		ABZR87_RS09230	0.40	-0.4
1,952,304	-		ABZR87_RS09230	0.40	-0.2
1,952,304	-		ABZR87_RS09230	0.40	+0.7
1,952,304	-		ABZR87_RS09230	0.40	-0.5
1,952,304	-		ABZR87_RS09230	0.40	-0.5
1,952,304	-		ABZR87_RS09230	0.40	-1.5
1,952,304	-		ABZR87_RS09230	0.40	+1.4
1,952,304	-		ABZR87_RS09230	0.40	+0.8
1,952,304	-		ABZR87_RS09230	0.40	-1.6
1,952,304	-		ABZR87_RS09230	0.40	+0.5
1,952,304	-		ABZR87_RS09230	0.40	-1.8
1,952,304	-		ABZR87_RS09230	0.40	+0.2
1,952,304	-		ABZR87_RS09230	0.40	-0.1
1,952,304	-		ABZR87_RS09230	0.40	-0.7
1,952,357	+		ABZR87_RS09230	0.42	-0.7
1,952,357	+		ABZR87_RS09230	0.42	+0.5
1,952,357	+		ABZR87_RS09230	0.42	+0.8
1,952,357	+		ABZR87_RS09230	0.42	-0.2
1,952,357	+		ABZR87_RS09230	0.42	-0.5
1,952,358	-		ABZR87_RS09230	0.42	+1.2
1,952,358	-		ABZR87_RS09230	0.42	-0.4
1,952,358	-		ABZR87_RS09230	0.42	-1.5
1,952,474	+		ABZR87_RS09230	0.46	+0.0
1,952,474	+		ABZR87_RS09230	0.46	-0.6
1,952,474	+		ABZR87_RS09230	0.46	-0.8
1,952,474	+		ABZR87_RS09230	0.46	-1.3
1,952,528	+		ABZR87_RS09230	0.48	+0.2
1,952,528	+		ABZR87_RS09230	0.48	-1.1
1,952,611	-		ABZR87_RS09230	0.51	-1.6
1,952,777	+		ABZR87_RS09230	0.56	+0.2
1,952,777	+		ABZR87_RS09230	0.56	-0.1
1,952,777	+		ABZR87_RS09230	0.56	-0.8
1,952,779	+		ABZR87_RS09230	0.57	+0.2
1,952,779	+		ABZR87_RS09230	0.57	+1.2
1,952,779	+		ABZR87_RS09230	0.57	-0.6
1,952,779	+		ABZR87_RS09230	0.57	+0.4
1,952,780	-		ABZR87_RS09230	0.57	-0.6
1,952,780	-		ABZR87_RS09230	0.57	-0.1
1,952,996	+		ABZR87_RS09230	0.64	-0.6
1,952,997	-		ABZR87_RS09230	0.64	-1.7
1,952,997	-		ABZR87_RS09230	0.64	-1.1
1,953,253	+		ABZR87_RS09230	0.73	-0.2
1,953,254	-		ABZR87_RS09230	0.73	-0.7
1,953,282	+		ABZR87_RS09230	0.74	-1.1
1,953,317	+		ABZR87_RS09230	0.75	+0.4
1,953,317	+		ABZR87_RS09230	0.75	+2.0
1,953,317	+		ABZR87_RS09230	0.75	+0.7
1,953,318	-		ABZR87_RS09230	0.75	-0.0
1,953,318	-		ABZR87_RS09230	0.75	-0.9
1,953,318	-		ABZR87_RS09230	0.75	+0.6
1,953,356	+		ABZR87_RS09230	0.76	-1.4
1,953,357	-		ABZR87_RS09230	0.76	-0.1
1,953,357	-		ABZR87_RS09230	0.76	+0.8
1,953,357	-		ABZR87_RS09230	0.76	+0.0
1,953,357	-		ABZR87_RS09230	0.76	+1.8
1,953,357	-		ABZR87_RS09230	0.76	+0.3
1,953,363	-		ABZR87_RS09230	0.77	-0.7
1,953,437	+		ABZR87_RS09230	0.79	+0.4
1,953,530	+		ABZR87_RS09230	0.82	-1.5
1,953,530	+		ABZR87_RS09230	0.82	+0.2
1,953,531	-		ABZR87_RS09230	0.83	-1.0
1,953,647	+		ABZR87_RS09230	0.87	-0.2
1,953,671	-		ABZR87_RS09230	0.87	-1.3
1,953,671	-		ABZR87_RS09230	0.87	-1.1
1,953,671	-		ABZR87_RS09230	0.87	+0.7
1,953,725	+		ABZR87_RS09230	0.89	-0.7
1,953,726	-		ABZR87_RS09230	0.89	-0.9
1,954,039	+				+0.9
1,954,129	+				+0.5
1,954,133	-				+0.0
1,954,133	-				+0.1
1,954,159	+				-1.8
1,954,159	+				-1.8
1,954,159	+				-0.1
1,954,159	+				+0.6
1,954,160	-				-0.4
1,954,160	-				+1.4
1,954,160	-				+0.7
1,954,160	-				+0.5
1,954,160	-				-1.9
1,954,160	-				+3.0
1,954,160	-				+0.0
1,954,604	+		ABZR87_RS09235	0.43	+0.4
1,954,605	-		ABZR87_RS09235	0.43	-0.1
1,954,605	-		ABZR87_RS09235	0.43	+0.6
1,954,615	+		ABZR87_RS09235	0.44	-0.3
1,954,616	-		ABZR87_RS09235	0.44	-0.9
1,954,763	-		ABZR87_RS09235	0.55	-1.2
1,954,979	-		ABZR87_RS09235	0.72	-1.0