Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08420

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08410 and ABZR87_RS08415 are separated by 73 nucleotidesABZR87_RS08415 and ABZR87_RS08420 are separated by 445 nucleotidesABZR87_RS08420 and ABZR87_RS08425 are separated by 394 nucleotidesABZR87_RS08425 and ABZR87_RS08430 are separated by 20 nucleotides ABZR87_RS08410: ABZR87_RS08410 - hypothetical protein, at 1,788,277 to 1,788,534 _RS08410 ABZR87_RS08415: ABZR87_RS08415 - DUF3309 family protein, at 1,788,608 to 1,788,766 _RS08415 ABZR87_RS08420: ABZR87_RS08420 - CsbD family protein, at 1,789,212 to 1,789,394 _RS08420 ABZR87_RS08425: ABZR87_RS08425 - PRC-barrel domain-containing protein, at 1,789,789 to 1,790,250 _RS08425 ABZR87_RS08430: ABZR87_RS08430 - Crp/Fnr family transcriptional regulator, at 1,790,271 to 1,790,990 _RS08430 Position (kb) 1789 1790Strain fitness (log2 ratio) -2 -1 0 1 2at 1788.501 kb on + strand, within ABZR87_RS08410at 1788.501 kb on + strand, within ABZR87_RS08410at 1788.502 kb on - strand, within ABZR87_RS08410at 1788.502 kb on - strand, within ABZR87_RS08410at 1788.554 kb on + strandat 1788.554 kb on + strandat 1788.555 kb on - strandat 1788.555 kb on - strandat 1788.555 kb on - strandat 1788.555 kb on - strandat 1788.593 kb on - strandat 1788.679 kb on - strand, within ABZR87_RS08415at 1788.679 kb on - strand, within ABZR87_RS08415at 1788.696 kb on + strand, within ABZR87_RS08415at 1788.696 kb on + strand, within ABZR87_RS08415at 1788.696 kb on + strand, within ABZR87_RS08415at 1788.697 kb on - strand, within ABZR87_RS08415at 1788.697 kb on - strand, within ABZR87_RS08415at 1788.697 kb on - strand, within ABZR87_RS08415at 1788.735 kb on - strand, within ABZR87_RS08415at 1788.735 kb on - strand, within ABZR87_RS08415at 1788.749 kb on + strand, within ABZR87_RS08415at 1788.749 kb on + strand, within ABZR87_RS08415at 1788.749 kb on + strand, within ABZR87_RS08415at 1788.750 kb on - strand, within ABZR87_RS08415at 1788.785 kb on + strandat 1788.785 kb on + strandat 1788.818 kb on + strandat 1788.818 kb on + strandat 1788.818 kb on + strandat 1788.819 kb on - strandat 1788.819 kb on - strandat 1788.843 kb on - strandat 1788.896 kb on - strandat 1788.896 kb on - strandat 1788.950 kb on + strandat 1789.110 kb on + strandat 1789.110 kb on + strandat 1789.111 kb on - strandat 1789.114 kb on + strandat 1789.114 kb on + strandat 1789.115 kb on - strandat 1789.134 kb on + strandat 1789.217 kb on + strandat 1789.217 kb on + strandat 1789.454 kb on - strandat 1789.526 kb on + strandat 1789.526 kb on + strandat 1789.526 kb on + strandat 1789.526 kb on + strandat 1789.526 kb on + strandat 1789.526 kb on + strandat 1789.527 kb on - strandat 1789.527 kb on - strandat 1789.601 kb on + strandat 1789.602 kb on - strandat 1789.602 kb on - strandat 1789.602 kb on - strandat 1789.602 kb on - strandat 1789.602 kb on - strandat 1789.602 kb on - strandat 1789.602 kb on - strandat 1789.602 kb on - strandat 1789.602 kb on - strandat 1789.730 kb on - strandat 1789.730 kb on - strandat 1789.730 kb on - strandat 1789.773 kb on + strandat 1790.018 kb on + strand, within ABZR87_RS08425at 1790.019 kb on - strand, within ABZR87_RS08425at 1790.019 kb on - strand, within ABZR87_RS08425at 1790.075 kb on + strand, within ABZR87_RS08425at 1790.076 kb on - strand, within ABZR87_RS08425at 1790.151 kb on + strand, within ABZR87_RS08425at 1790.151 kb on + strand, within ABZR87_RS08425at 1790.151 kb on + strand, within ABZR87_RS08425at 1790.152 kb on - strand, within ABZR87_RS08425at 1790.152 kb on - strand, within ABZR87_RS08425at 1790.152 kb on - strand, within ABZR87_RS08425at 1790.191 kb on + strand, within ABZR87_RS08425at 1790.191 kb on + strand, within ABZR87_RS08425at 1790.191 kb on + strand, within ABZR87_RS08425at 1790.191 kb on + strand, within ABZR87_RS08425at 1790.191 kb on + strand, within ABZR87_RS08425at 1790.191 kb on + strand, within ABZR87_RS08425at 1790.191 kb on + strand, within ABZR87_RS08425at 1790.192 kb on - strand, within ABZR87_RS08425at 1790.192 kb on - strand, within ABZR87_RS08425at 1790.192 kb on - strand, within ABZR87_RS08425at 1790.194 kb on + strand, within ABZR87_RS08425at 1790.194 kb on + strand, within ABZR87_RS08425at 1790.194 kb on + strand, within ABZR87_RS08425at 1790.194 kb on + strand, within ABZR87_RS08425at 1790.195 kb on - strand, within ABZR87_RS08425at 1790.209 kb on + strandat 1790.262 kb on + strandat 1790.263 kb on - strandat 1790.263 kb on - strandat 1790.326 kb on + strandat 1790.326 kb on + strandat 1790.326 kb on + strandat 1790.327 kb on - strandat 1790.327 kb on - strandat 1790.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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1,788,501 + ABZR87_RS08410 0.87 -1.9
1,788,501 + ABZR87_RS08410 0.87 -0.1
1,788,502 - ABZR87_RS08410 0.87 -2.5
1,788,502 - ABZR87_RS08410 0.87 +1.2
1,788,554 + -0.6
1,788,554 + +0.5
1,788,555 - +0.2
1,788,555 - -0.5
1,788,555 - +0.5
1,788,555 - +2.6
1,788,593 - -0.9
1,788,679 - ABZR87_RS08415 0.45 +0.4
1,788,679 - ABZR87_RS08415 0.45 +1.0
1,788,696 + ABZR87_RS08415 0.55 -0.5
1,788,696 + ABZR87_RS08415 0.55 -0.4
1,788,696 + ABZR87_RS08415 0.55 +0.6
1,788,697 - ABZR87_RS08415 0.56 +0.0
1,788,697 - ABZR87_RS08415 0.56 -1.4
1,788,697 - ABZR87_RS08415 0.56 +0.7
1,788,735 - ABZR87_RS08415 0.80 -0.9
1,788,735 - ABZR87_RS08415 0.80 +0.1
1,788,749 + ABZR87_RS08415 0.89 -1.3
1,788,749 + ABZR87_RS08415 0.89 +0.2
1,788,749 + ABZR87_RS08415 0.89 -0.0
1,788,750 - ABZR87_RS08415 0.89 -0.2
1,788,785 + -0.0
1,788,785 + +0.3
1,788,818 + -0.4
1,788,818 + -1.6
1,788,818 + +0.5
1,788,819 - -2.4
1,788,819 - +2.3
1,788,843 - -2.1
1,788,896 - -0.5
1,788,896 - -0.5
1,788,950 + -1.5
1,789,110 + -1.1
1,789,110 + +0.4
1,789,111 - +0.1
1,789,114 + -1.9
1,789,114 + +0.5
1,789,115 - +1.9
1,789,134 + -1.4
1,789,217 + -0.6
1,789,217 + -1.1
1,789,454 - -1.3
1,789,526 + +0.1
1,789,526 + -1.3
1,789,526 + -0.2
1,789,526 + -0.5
1,789,526 + -1.2
1,789,526 + +0.1
1,789,527 - +2.3
1,789,527 - -0.3
1,789,601 + +1.2
1,789,602 - +0.8
1,789,602 - +1.4
1,789,602 - -2.7
1,789,602 - +0.2
1,789,602 - -0.0
1,789,602 - -1.4
1,789,602 - -0.0
1,789,602 - +0.1
1,789,602 - -0.9
1,789,730 - -0.2
1,789,730 - -1.0
1,789,730 - -0.4
1,789,773 + +0.4
1,790,018 + ABZR87_RS08425 0.50 +1.9
1,790,019 - ABZR87_RS08425 0.50 -2.4
1,790,019 - ABZR87_RS08425 0.50 +0.1
1,790,075 + ABZR87_RS08425 0.62 +0.4
1,790,076 - ABZR87_RS08425 0.62 +0.2
1,790,151 + ABZR87_RS08425 0.78 -0.6
1,790,151 + ABZR87_RS08425 0.78 +0.1
1,790,151 + ABZR87_RS08425 0.78 +1.8
1,790,152 - ABZR87_RS08425 0.79 -0.2
1,790,152 - ABZR87_RS08425 0.79 -1.0
1,790,152 - ABZR87_RS08425 0.79 -0.2
1,790,191 + ABZR87_RS08425 0.87 +0.2
1,790,191 + ABZR87_RS08425 0.87 -1.0
1,790,191 + ABZR87_RS08425 0.87 -0.8
1,790,191 + ABZR87_RS08425 0.87 -0.7
1,790,191 + ABZR87_RS08425 0.87 -1.1
1,790,191 + ABZR87_RS08425 0.87 +2.0
1,790,191 + ABZR87_RS08425 0.87 -0.8
1,790,192 - ABZR87_RS08425 0.87 +2.5
1,790,192 - ABZR87_RS08425 0.87 -1.4
1,790,192 - ABZR87_RS08425 0.87 +1.6
1,790,194 + ABZR87_RS08425 0.88 -0.8
1,790,194 + ABZR87_RS08425 0.88 -0.9
1,790,194 + ABZR87_RS08425 0.88 -1.7
1,790,194 + ABZR87_RS08425 0.88 +0.1
1,790,195 - ABZR87_RS08425 0.88 +0.8
1,790,209 + +0.3
1,790,262 + +1.6
1,790,263 - +2.6
1,790,263 - +1.2
1,790,326 + -1.2
1,790,326 + -0.9
1,790,326 + -0.9
1,790,327 - +0.5
1,790,327 - +0.0
1,790,327 - -0.8

Or see this region's nucleotide sequence