Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08220 and ABZR87_RS08225 are separated by 54 nucleotides ABZR87_RS08225 and ABZR87_RS08230 are separated by 138 nucleotides ABZR87_RS08230 and ABZR87_RS08235 overlap by 2 nucleotides
ABZR87_RS08220: ABZR87_RS08220 - TonB-dependent receptor, at 1,747,202 to 1,749,385
_RS08220
ABZR87_RS08225: ABZR87_RS08225 - hypothetical protein, at 1,749,440 to 1,750,072
_RS08225
ABZR87_RS08230: ABZR87_RS08230 - hypothetical protein, at 1,750,211 to 1,750,798
_RS08230
ABZR87_RS08235: ABZR87_RS08235 - hypothetical protein, at 1,750,797 to 1,751,255
_RS08235
Position (kb) 1749
1750
1751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1748.480 kb on + strand, within ABZR87_RS08220 at 1748.480 kb on + strand, within ABZR87_RS08220 at 1748.525 kb on + strand, within ABZR87_RS08220 at 1748.526 kb on - strand, within ABZR87_RS08220 at 1748.526 kb on - strand, within ABZR87_RS08220 at 1748.538 kb on - strand, within ABZR87_RS08220 at 1748.597 kb on + strand, within ABZR87_RS08220 at 1748.597 kb on + strand, within ABZR87_RS08220 at 1748.597 kb on + strand, within ABZR87_RS08220 at 1748.597 kb on + strand, within ABZR87_RS08220 at 1748.598 kb on - strand, within ABZR87_RS08220 at 1748.598 kb on - strand, within ABZR87_RS08220 at 1748.598 kb on - strand, within ABZR87_RS08220 at 1748.598 kb on - strand, within ABZR87_RS08220 at 1748.642 kb on + strand, within ABZR87_RS08220 at 1748.760 kb on - strand, within ABZR87_RS08220 at 1748.819 kb on + strand, within ABZR87_RS08220 at 1748.819 kb on + strand, within ABZR87_RS08220 at 1748.819 kb on + strand, within ABZR87_RS08220 at 1748.819 kb on + strand, within ABZR87_RS08220 at 1748.820 kb on - strand, within ABZR87_RS08220 at 1748.820 kb on - strand, within ABZR87_RS08220 at 1748.820 kb on - strand, within ABZR87_RS08220 at 1748.876 kb on + strand, within ABZR87_RS08220 at 1748.891 kb on + strand, within ABZR87_RS08220 at 1748.909 kb on + strand, within ABZR87_RS08220 at 1748.910 kb on - strand, within ABZR87_RS08220 at 1748.910 kb on - strand, within ABZR87_RS08220 at 1748.910 kb on - strand, within ABZR87_RS08220 at 1748.933 kb on + strand, within ABZR87_RS08220 at 1748.933 kb on + strand, within ABZR87_RS08220 at 1748.933 kb on + strand, within ABZR87_RS08220 at 1749.038 kb on + strand, within ABZR87_RS08220 at 1749.038 kb on + strand, within ABZR87_RS08220 at 1749.039 kb on - strand, within ABZR87_RS08220 at 1749.039 kb on - strand, within ABZR87_RS08220 at 1749.039 kb on - strand, within ABZR87_RS08220 at 1749.125 kb on + strand, within ABZR87_RS08220 at 1749.125 kb on + strand, within ABZR87_RS08220 at 1749.125 kb on + strand, within ABZR87_RS08220 at 1749.126 kb on - strand, within ABZR87_RS08220 at 1749.194 kb on + strand at 1749.294 kb on - strand at 1749.294 kb on - strand at 1749.294 kb on - strand at 1749.294 kb on - strand at 1749.353 kb on - strand at 1749.353 kb on - strand at 1749.384 kb on - strand at 1749.384 kb on - strand at 1749.384 kb on - strand at 1749.384 kb on - strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.402 kb on + strand at 1749.403 kb on - strand at 1749.403 kb on - strand at 1749.403 kb on - strand at 1749.403 kb on - strand at 1749.403 kb on - strand at 1749.403 kb on - strand at 1749.403 kb on - strand at 1749.403 kb on - strand at 1749.403 kb on - strand at 1749.406 kb on + strand at 1749.406 kb on + strand at 1749.406 kb on + strand at 1749.406 kb on + strand at 1749.406 kb on + strand at 1749.406 kb on + strand at 1749.406 kb on + strand at 1749.407 kb on - strand at 1749.407 kb on - strand at 1749.407 kb on - strand at 1749.407 kb on - strand at 1749.430 kb on + strand at 1749.430 kb on + strand at 1749.431 kb on - strand at 1749.431 kb on - strand at 1749.431 kb on - strand at 1749.624 kb on + strand, within ABZR87_RS08225 at 1749.625 kb on - strand, within ABZR87_RS08225 at 1749.822 kb on + strand, within ABZR87_RS08225 at 1749.822 kb on + strand, within ABZR87_RS08225 at 1749.822 kb on + strand, within ABZR87_RS08225 at 1749.822 kb on + strand, within ABZR87_RS08225 at 1749.823 kb on - strand, within ABZR87_RS08225 at 1749.823 kb on - strand, within ABZR87_RS08225 at 1749.823 kb on - strand, within ABZR87_RS08225 at 1749.823 kb on - strand, within ABZR87_RS08225 at 1749.823 kb on - strand, within ABZR87_RS08225 at 1750.061 kb on + strand at 1750.062 kb on - strand at 1750.062 kb on - strand at 1750.248 kb on + strand at 1750.248 kb on + strand at 1750.248 kb on + strand at 1750.248 kb on + strand at 1750.248 kb on - strand at 1750.249 kb on - strand at 1750.249 kb on - strand at 1750.249 kb on - strand at 1750.249 kb on - strand at 1750.472 kb on + strand, within ABZR87_RS08230 at 1750.472 kb on + strand, within ABZR87_RS08230 at 1750.505 kb on + strand, within ABZR87_RS08230 at 1750.505 kb on + strand, within ABZR87_RS08230 at 1750.506 kb on - strand, within ABZR87_RS08230 at 1750.779 kb on + strand at 1750.859 kb on + strand, within ABZR87_RS08235
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 1,748,480 + ABZR87_RS08220 0.59 +0.3 1,748,480 + ABZR87_RS08220 0.59 +0.2 1,748,525 + ABZR87_RS08220 0.61 -1.0 1,748,526 - ABZR87_RS08220 0.61 +0.0 1,748,526 - ABZR87_RS08220 0.61 -0.6 1,748,538 - ABZR87_RS08220 0.61 +0.2 1,748,597 + ABZR87_RS08220 0.64 +0.3 1,748,597 + ABZR87_RS08220 0.64 -0.6 1,748,597 + ABZR87_RS08220 0.64 +1.5 1,748,597 + ABZR87_RS08220 0.64 +0.2 1,748,598 - ABZR87_RS08220 0.64 -1.9 1,748,598 - ABZR87_RS08220 0.64 +1.2 1,748,598 - ABZR87_RS08220 0.64 +0.8 1,748,598 - ABZR87_RS08220 0.64 +0.9 1,748,642 + ABZR87_RS08220 0.66 -0.5 1,748,760 - ABZR87_RS08220 0.71 +0.7 1,748,819 + ABZR87_RS08220 0.74 +0.7 1,748,819 + ABZR87_RS08220 0.74 +0.2 1,748,819 + ABZR87_RS08220 0.74 -0.8 1,748,819 + ABZR87_RS08220 0.74 +0.3 1,748,820 - ABZR87_RS08220 0.74 +1.3 1,748,820 - ABZR87_RS08220 0.74 +0.0 1,748,820 - ABZR87_RS08220 0.74 -1.6 1,748,876 + ABZR87_RS08220 0.77 +1.2 1,748,891 + ABZR87_RS08220 0.77 +0.4 1,748,909 + ABZR87_RS08220 0.78 +0.5 1,748,910 - ABZR87_RS08220 0.78 -0.7 1,748,910 - ABZR87_RS08220 0.78 -1.2 1,748,910 - ABZR87_RS08220 0.78 -0.9 1,748,933 + ABZR87_RS08220 0.79 +0.5 1,748,933 + ABZR87_RS08220 0.79 -1.5 1,748,933 + ABZR87_RS08220 0.79 -0.5 1,749,038 + ABZR87_RS08220 0.84 -0.3 1,749,038 + ABZR87_RS08220 0.84 +0.2 1,749,039 - ABZR87_RS08220 0.84 -1.9 1,749,039 - ABZR87_RS08220 0.84 +0.2 1,749,039 - ABZR87_RS08220 0.84 +0.4 1,749,125 + ABZR87_RS08220 0.88 +1.2 1,749,125 + ABZR87_RS08220 0.88 +0.4 1,749,125 + ABZR87_RS08220 0.88 +0.4 1,749,126 - ABZR87_RS08220 0.88 +0.6 1,749,194 + -0.2 1,749,294 - -0.3 1,749,294 - -1.8 1,749,294 - +0.8 1,749,294 - +1.5 1,749,353 - +0.4 1,749,353 - -1.6 1,749,384 - -0.6 1,749,384 - -0.3 1,749,384 - +0.3 1,749,384 - -0.9 1,749,402 + +0.4 1,749,402 + -1.5 1,749,402 + -1.1 1,749,402 + +0.3 1,749,402 + +0.5 1,749,402 + -1.4 1,749,402 + -0.1 1,749,402 + +0.4 1,749,402 + +0.4 1,749,402 + -2.7 1,749,402 + -1.0 1,749,402 + -0.0 1,749,402 + -1.7 1,749,402 + +0.6 1,749,402 + -1.9 1,749,402 + +0.0 1,749,402 + +0.1 1,749,403 - +0.7 1,749,403 - -1.5 1,749,403 - +0.4 1,749,403 - -1.8 1,749,403 - -0.5 1,749,403 - -0.4 1,749,403 - -1.6 1,749,403 - +1.0 1,749,403 - -1.7 1,749,406 + -0.1 1,749,406 + +0.2 1,749,406 + +1.4 1,749,406 + +0.5 1,749,406 + +1.5 1,749,406 + +0.4 1,749,406 + +0.4 1,749,407 - -0.8 1,749,407 - -0.0 1,749,407 - -0.4 1,749,407 - -1.2 1,749,430 + +4.9 1,749,430 + +0.4 1,749,431 - -2.0 1,749,431 - -0.9 1,749,431 - -1.1 1,749,624 + ABZR87_RS08225 0.29 -1.0 1,749,625 - ABZR87_RS08225 0.29 -0.6 1,749,822 + ABZR87_RS08225 0.60 +1.7 1,749,822 + ABZR87_RS08225 0.60 +1.2 1,749,822 + ABZR87_RS08225 0.60 +0.8 1,749,822 + ABZR87_RS08225 0.60 -0.3 1,749,823 - ABZR87_RS08225 0.61 -0.8 1,749,823 - ABZR87_RS08225 0.61 -0.4 1,749,823 - ABZR87_RS08225 0.61 -1.7 1,749,823 - ABZR87_RS08225 0.61 -2.8 1,749,823 - ABZR87_RS08225 0.61 -2.2 1,750,061 + +0.1 1,750,062 - -0.2 1,750,062 - -0.0 1,750,248 + -1.6 1,750,248 + -0.1 1,750,248 + +0.7 1,750,248 + -1.9 1,750,248 - -1.4 1,750,249 - -0.5 1,750,249 - -0.2 1,750,249 - -0.6 1,750,249 - +0.4 1,750,472 + ABZR87_RS08230 0.44 -0.6 1,750,472 + ABZR87_RS08230 0.44 +1.3 1,750,505 + ABZR87_RS08230 0.50 +0.2 1,750,505 + ABZR87_RS08230 0.50 -1.1 1,750,506 - ABZR87_RS08230 0.50 +0.2 1,750,779 + +0.9 1,750,859 + ABZR87_RS08235 0.14 -0.3
Or see this region's nucleotide sequence