Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07815

Experiment: root sample 5; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS07810 and ABZR87_RS07815 are separated by 4 nucleotidesABZR87_RS07815 and ABZR87_RS07820 are separated by 7 nucleotides ABZR87_RS07810: ABZR87_RS07810 - acetyl-CoA C-acetyltransferase, at 1,657,387 to 1,658,706 _RS07810 ABZR87_RS07815: ABZR87_RS07815 - MaoC/PaaZ C-terminal domain-containing protein, at 1,658,711 to 1,659,631 _RS07815 ABZR87_RS07820: ABZR87_RS07820 - 3-oxoacyl-ACP reductase, at 1,659,639 to 1,661,051 _RS07820 Position (kb) 1658 1659 1660Strain fitness (log2 ratio) -2 -1 0 1 2at 1657.751 kb on + strand, within ABZR87_RS07810at 1657.751 kb on + strand, within ABZR87_RS07810at 1657.835 kb on + strand, within ABZR87_RS07810at 1657.836 kb on - strand, within ABZR87_RS07810at 1657.836 kb on - strand, within ABZR87_RS07810at 1657.836 kb on - strand, within ABZR87_RS07810at 1657.836 kb on - strand, within ABZR87_RS07810at 1657.836 kb on - strand, within ABZR87_RS07810at 1658.069 kb on + strand, within ABZR87_RS07810at 1658.340 kb on + strand, within ABZR87_RS07810at 1658.341 kb on - strand, within ABZR87_RS07810at 1658.341 kb on - strand, within ABZR87_RS07810at 1658.444 kb on + strand, within ABZR87_RS07810at 1658.444 kb on + strand, within ABZR87_RS07810at 1658.445 kb on - strand, within ABZR87_RS07810at 1658.445 kb on - strand, within ABZR87_RS07810at 1658.587 kb on + strandat 1658.588 kb on - strandat 1658.588 kb on - strandat 1658.588 kb on - strandat 1658.628 kb on - strandat 1658.767 kb on - strandat 1659.151 kb on - strand, within ABZR87_RS07815at 1659.304 kb on + strand, within ABZR87_RS07815at 1659.396 kb on + strand, within ABZR87_RS07815at 1659.397 kb on - strand, within ABZR87_RS07815at 1659.407 kb on + strand, within ABZR87_RS07815at 1659.827 kb on + strand, within ABZR87_RS07820at 1659.925 kb on + strand, within ABZR87_RS07820at 1659.925 kb on + strand, within ABZR87_RS07820at 1659.925 kb on + strand, within ABZR87_RS07820at 1659.926 kb on - strand, within ABZR87_RS07820at 1659.926 kb on - strand, within ABZR87_RS07820at 1659.926 kb on - strand, within ABZR87_RS07820at 1660.053 kb on - strand, within ABZR87_RS07820at 1660.064 kb on + strand, within ABZR87_RS07820at 1660.065 kb on - strand, within ABZR87_RS07820at 1660.065 kb on - strand, within ABZR87_RS07820at 1660.201 kb on + strand, within ABZR87_RS07820at 1660.201 kb on + strand, within ABZR87_RS07820at 1660.201 kb on + strand, within ABZR87_RS07820at 1660.202 kb on - strand, within ABZR87_RS07820at 1660.432 kb on + strand, within ABZR87_RS07820at 1660.432 kb on + strand, within ABZR87_RS07820at 1660.433 kb on - strand, within ABZR87_RS07820at 1660.433 kb on - strand, within ABZR87_RS07820at 1660.501 kb on + strand, within ABZR87_RS07820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
remove
1,657,751 + ABZR87_RS07810 0.28 -1.1
1,657,751 + ABZR87_RS07810 0.28 +1.1
1,657,835 + ABZR87_RS07810 0.34 +0.8
1,657,836 - ABZR87_RS07810 0.34 -0.5
1,657,836 - ABZR87_RS07810 0.34 +0.6
1,657,836 - ABZR87_RS07810 0.34 -1.6
1,657,836 - ABZR87_RS07810 0.34 +0.6
1,657,836 - ABZR87_RS07810 0.34 +0.4
1,658,069 + ABZR87_RS07810 0.52 -1.3
1,658,340 + ABZR87_RS07810 0.72 -0.5
1,658,341 - ABZR87_RS07810 0.72 -0.7
1,658,341 - ABZR87_RS07810 0.72 +0.6
1,658,444 + ABZR87_RS07810 0.80 +0.8
1,658,444 + ABZR87_RS07810 0.80 +0.1
1,658,445 - ABZR87_RS07810 0.80 +1.2
1,658,445 - ABZR87_RS07810 0.80 +1.3
1,658,587 + -0.5
1,658,588 - -1.9
1,658,588 - -0.1
1,658,588 - +0.1
1,658,628 - +0.3
1,658,767 - +1.8
1,659,151 - ABZR87_RS07815 0.48 +0.3
1,659,304 + ABZR87_RS07815 0.64 -0.1
1,659,396 + ABZR87_RS07815 0.74 -0.7
1,659,397 - ABZR87_RS07815 0.74 -0.4
1,659,407 + ABZR87_RS07815 0.76 -1.8
1,659,827 + ABZR87_RS07820 0.13 +0.5
1,659,925 + ABZR87_RS07820 0.20 -0.0
1,659,925 + ABZR87_RS07820 0.20 -1.0
1,659,925 + ABZR87_RS07820 0.20 +1.0
1,659,926 - ABZR87_RS07820 0.20 +0.4
1,659,926 - ABZR87_RS07820 0.20 +1.0
1,659,926 - ABZR87_RS07820 0.20 +0.6
1,660,053 - ABZR87_RS07820 0.29 -0.9
1,660,064 + ABZR87_RS07820 0.30 -0.7
1,660,065 - ABZR87_RS07820 0.30 -0.8
1,660,065 - ABZR87_RS07820 0.30 -0.7
1,660,201 + ABZR87_RS07820 0.40 +0.3
1,660,201 + ABZR87_RS07820 0.40 -0.9
1,660,201 + ABZR87_RS07820 0.40 -0.1
1,660,202 - ABZR87_RS07820 0.40 +0.6
1,660,432 + ABZR87_RS07820 0.56 -1.3
1,660,432 + ABZR87_RS07820 0.56 +2.6
1,660,433 - ABZR87_RS07820 0.56 -0.2
1,660,433 - ABZR87_RS07820 0.56 -0.1
1,660,501 + ABZR87_RS07820 0.61 +0.0

Or see this region's nucleotide sequence