Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07380

Experiment: root sample 5; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root sample 5; outgrowth in LB
1,560,994	+		ABZR87_RS07370	0.90	+0.5
1,560,995	-		ABZR87_RS07370	0.90	-0.6
1,560,995	-		ABZR87_RS07370	0.90	-0.5
1,561,009	+				-0.4
1,561,009	+				+3.5
1,561,009	+				+1.0
1,561,010	-				-0.6
1,561,010	-				-1.4
1,561,010	-				+0.2
1,561,043	-				-2.4
1,561,105	+				+0.8
1,561,106	-				+1.3
1,561,106	-				+0.4
1,561,167	+				+0.3
1,561,168	-				-0.9
1,561,168	-				+0.2
1,561,225	+				-2.6
1,561,309	+		ABZR87_RS07375	0.22	+0.2
1,561,309	+		ABZR87_RS07375	0.22	-1.1
1,561,309	+		ABZR87_RS07375	0.22	-1.3
1,561,310	-		ABZR87_RS07375	0.22	-0.5
1,561,310	-		ABZR87_RS07375	0.22	-0.4
1,561,310	-		ABZR87_RS07375	0.22	-1.8
1,561,310	-		ABZR87_RS07375	0.22	-0.5
1,561,310	-		ABZR87_RS07375	0.22	-0.2
1,561,310	-		ABZR87_RS07375	0.22	-1.2
1,561,330	-		ABZR87_RS07375	0.26	-0.8
1,561,402	+		ABZR87_RS07375	0.38	-0.0
1,561,403	-		ABZR87_RS07375	0.38	+1.6
1,561,403	-		ABZR87_RS07375	0.38	+0.7
1,561,429	+		ABZR87_RS07375	0.43	-0.7
1,561,525	+		ABZR87_RS07375	0.59	-0.9
1,561,525	+		ABZR87_RS07375	0.59	+2.3
1,561,525	+		ABZR87_RS07375	0.59	-1.4
1,561,526	-		ABZR87_RS07375	0.59	+0.7
1,561,526	-		ABZR87_RS07375	0.59	-0.2
1,561,526	-		ABZR87_RS07375	0.59	+0.8
1,561,648	+		ABZR87_RS07375	0.80	-2.4
1,561,648	+		ABZR87_RS07375	0.80	-0.5
1,561,648	+		ABZR87_RS07375	0.80	+1.1
1,561,648	+		ABZR87_RS07375	0.80	-0.6
1,561,648	+		ABZR87_RS07375	0.80	-0.2
1,561,648	+		ABZR87_RS07375	0.80	+0.6
1,561,648	+		ABZR87_RS07375	0.80	-1.9
1,561,648	+		ABZR87_RS07375	0.80	+0.5
1,561,649	-		ABZR87_RS07375	0.81	-0.0
1,561,649	-		ABZR87_RS07375	0.81	+0.2
1,561,649	-		ABZR87_RS07375	0.81	-0.6
1,561,649	-		ABZR87_RS07375	0.81	+0.4
1,561,649	-		ABZR87_RS07375	0.81	+0.4
1,561,649	-		ABZR87_RS07375	0.81	+0.1
1,561,649	-		ABZR87_RS07375	0.81	+0.2
1,561,649	-		ABZR87_RS07375	0.81	+0.2
1,561,649	-		ABZR87_RS07375	0.81	-1.6
1,561,649	-		ABZR87_RS07375	0.81	+0.8
1,561,649	-		ABZR87_RS07375	0.81	-3.0
1,561,649	-		ABZR87_RS07375	0.81	+1.9
1,561,649	-		ABZR87_RS07375	0.81	+1.3
1,561,649	-		ABZR87_RS07375	0.81	-2.1
1,561,649	-		ABZR87_RS07375	0.81	-0.9
1,561,649	-		ABZR87_RS07375	0.81	-0.3
1,561,649	-		ABZR87_RS07375	0.81	-1.6
1,561,649	-		ABZR87_RS07375	0.81	-0.4
1,561,649	-		ABZR87_RS07375	0.81	-0.3
1,561,649	-		ABZR87_RS07375	0.81	+0.5
1,561,675	+		ABZR87_RS07375	0.85	-0.6
1,561,675	+		ABZR87_RS07375	0.85	-1.2
1,561,675	+		ABZR87_RS07375	0.85	-1.8
1,561,676	-		ABZR87_RS07375	0.85	-0.5
1,561,676	-		ABZR87_RS07375	0.85	-1.0
1,561,751	+				-0.9
1,561,751	+				+2.0
1,561,752	-				+0.1
1,561,752	-				-0.9
1,561,841	+				+0.5
1,561,841	+				+0.8
1,561,841	+				-0.1
1,561,842	-				-2.3
1,561,842	-				+0.3
1,561,857	-				-0.3
1,561,893	+				+0.9
1,561,893	+				-0.6
1,561,894	-				+0.0
1,561,894	-				-0.1
1,561,907	-				-1.3
1,562,034	+				-1.6
1,562,034	+				+2.0
1,562,034	+				-2.2
1,562,034	+				+2.0
1,562,034	+				+0.1
1,562,040	+				-1.7
1,562,040	+				-1.2
1,562,041	-				+1.6
1,562,041	-				-2.2
1,562,041	-				+1.3
1,562,041	-				+0.8
1,562,154	+				-1.0
1,562,154	+				-1.6
1,562,154	+				+0.2
1,562,155	-				-0.2
1,562,155	-				-1.5
1,562,155	-				+2.3
1,562,196	+				-1.3
1,562,197	-				+0.3
1,562,197	-				-1.0
1,562,197	-				+0.4
1,562,197	-				-0.2
1,562,409	+		ABZR87_RS07380	0.11	-3.2
1,562,409	+		ABZR87_RS07380	0.11	+0.0
1,562,409	+		ABZR87_RS07380	0.11	+0.1
1,562,409	+		ABZR87_RS07380	0.11	-0.7
1,562,409	+		ABZR87_RS07380	0.11	-2.2
1,562,409	+		ABZR87_RS07380	0.11	-1.3
1,562,409	+		ABZR87_RS07380	0.11	-1.2
1,562,409	+		ABZR87_RS07380	0.11	-1.4
1,562,409	+		ABZR87_RS07380	0.11	+0.6
1,562,410	-		ABZR87_RS07380	0.11	+0.0
1,562,410	-		ABZR87_RS07380	0.11	-1.3
1,562,410	-		ABZR87_RS07380	0.11	+0.5
1,562,410	-		ABZR87_RS07380	0.11	+0.6
1,562,410	-		ABZR87_RS07380	0.11	-2.3
1,562,410	-		ABZR87_RS07380	0.11	+0.9
1,562,410	-		ABZR87_RS07380	0.11	-1.0
1,562,637	+		ABZR87_RS07380	0.17	-0.8
1,562,637	+		ABZR87_RS07380	0.17	-1.3
1,562,661	-		ABZR87_RS07380	0.17	+0.2
1,562,685	-		ABZR87_RS07380	0.18	-1.4
1,562,760	+		ABZR87_RS07380	0.20	-0.4
1,562,760	+		ABZR87_RS07380	0.20	-2.3
1,562,760	+		ABZR87_RS07380	0.20	-0.8
1,562,760	+		ABZR87_RS07380	0.20	-0.6
1,562,760	+		ABZR87_RS07380	0.20	-2.0
1,562,761	-		ABZR87_RS07380	0.20	-1.7
1,562,761	-		ABZR87_RS07380	0.20	-1.6
1,563,312	+		ABZR87_RS07380	0.33	-2.0
1,563,381	+		ABZR87_RS07380	0.35	-1.0
1,563,399	+		ABZR87_RS07380	0.36	+0.5
1,563,565	-		ABZR87_RS07380	0.40	-2.5
1,563,666	+		ABZR87_RS07380	0.42	-0.2
1,563,666	+		ABZR87_RS07380	0.42	+1.8
1,563,873	+		ABZR87_RS07380	0.47	-0.1
1,563,874	-		ABZR87_RS07380	0.47	-1.7
1,563,874	-		ABZR87_RS07380	0.47	-2.4
1,563,942	+		ABZR87_RS07380	0.49	+1.7
1,564,212	+		ABZR87_RS07380	0.56	-1.4
1,564,212	+		ABZR87_RS07380	0.56	+0.3
1,564,212	+		ABZR87_RS07380	0.56	-0.9
1,564,212	+		ABZR87_RS07380	0.56	-0.4
1,564,212	+		ABZR87_RS07380	0.56	-2.5
1,564,213	-		ABZR87_RS07380	0.56	-1.7
1,564,213	-		ABZR87_RS07380	0.56	+1.3
1,564,213	-		ABZR87_RS07380	0.56	+1.0
1,564,213	-		ABZR87_RS07380	0.56	+0.3
1,564,213	-		ABZR87_RS07380	0.56	-1.7
1,564,213	-		ABZR87_RS07380	0.56	+0.6
1,564,359	+		ABZR87_RS07380	0.59	+1.6
1,564,359	+		ABZR87_RS07380	0.59	-0.1
1,564,359	+		ABZR87_RS07380	0.59	-0.7
1,564,359	+		ABZR87_RS07380	0.59	+0.3
1,564,459	-		ABZR87_RS07380	0.62	+0.1
1,564,460	+		ABZR87_RS07380	0.62	-1.4
1,564,460	+		ABZR87_RS07380	0.62	+0.1
1,564,461	-		ABZR87_RS07380	0.62	-0.6
1,564,461	-		ABZR87_RS07380	0.62	-2.1
1,564,608	+		ABZR87_RS07380	0.66	+1.8
1,564,608	+		ABZR87_RS07380	0.66	-0.1
1,564,609	-		ABZR87_RS07380	0.66	-1.6
1,564,634	+		ABZR87_RS07380	0.66	-0.0
1,564,635	-		ABZR87_RS07380	0.66	-0.1
1,564,662	+		ABZR87_RS07380	0.67	-1.3
1,564,662	+		ABZR87_RS07380	0.67	+2.3
1,564,663	-		ABZR87_RS07380	0.67	-1.4
1,564,663	-		ABZR87_RS07380	0.67	-0.3
1,564,866	+		ABZR87_RS07380	0.72	-0.5
1,564,867	-		ABZR87_RS07380	0.72	-2.8
1,564,867	-		ABZR87_RS07380	0.72	-1.2
1,564,867	-		ABZR87_RS07380	0.72	-2.1
1,564,929	+		ABZR87_RS07380	0.73	-0.7
1,564,930	-		ABZR87_RS07380	0.74	-0.3
1,564,930	-		ABZR87_RS07380	0.74	-0.1
1,564,930	-		ABZR87_RS07380	0.74	-1.2
1,564,930	-		ABZR87_RS07380	0.74	+1.3
1,565,172	+		ABZR87_RS07380	0.79	+0.1
1,565,172	+		ABZR87_RS07380	0.79	-0.2
1,565,172	+		ABZR87_RS07380	0.79	-1.0
1,565,172	+		ABZR87_RS07380	0.79	-0.5
1,565,172	+		ABZR87_RS07380	0.79	-0.3
1,565,173	-		ABZR87_RS07380	0.80	+0.3
1,565,274	+		ABZR87_RS07380	0.82	-1.0
1,565,373	-		ABZR87_RS07380	0.84	-0.5
1,565,383	-		ABZR87_RS07380	0.85	-0.8
1,565,383	-		ABZR87_RS07380	0.85	-1.8
1,565,424	+		ABZR87_RS07380	0.86	+0.0
1,565,425	-		ABZR87_RS07380	0.86	-1.2
1,565,425	-		ABZR87_RS07380	0.86	+0.3
1,565,425	-		ABZR87_RS07380	0.86	-1.2
1,565,425	-		ABZR87_RS07380	0.86	-3.6
1,565,493	+		ABZR87_RS07380	0.87	+0.8
1,565,493	+		ABZR87_RS07380	0.87	-1.5
1,565,494	-		ABZR87_RS07380	0.87	+0.8
1,565,494	-		ABZR87_RS07380	0.87	-0.6
1,565,494	-		ABZR87_RS07380	0.87	-2.0
1,565,494	-		ABZR87_RS07380	0.87	-1.3
1,565,494	-		ABZR87_RS07380	0.87	+0.0
1,565,494	-		ABZR87_RS07380	0.87	-1.3
1,565,541	+		ABZR87_RS07380	0.89	-0.4
1,565,541	+		ABZR87_RS07380	0.89	-2.5
1,565,542	-		ABZR87_RS07380	0.89	-0.4
1,565,547	+		ABZR87_RS07380	0.89	-2.0
1,565,547	+		ABZR87_RS07380	0.89	-0.9
1,565,547	+		ABZR87_RS07380	0.89	-0.3
1,565,547	+		ABZR87_RS07380	0.89	-0.6
1,565,547	+		ABZR87_RS07380	0.89	-0.8
1,565,548	-		ABZR87_RS07380	0.89	-1.2
1,565,548	-		ABZR87_RS07380	0.89	-1.3
1,565,548	-		ABZR87_RS07380	0.89	+0.1
1,565,548	-		ABZR87_RS07380	0.89	-2.3
1,565,548	-		ABZR87_RS07380	0.89	-1.3
1,565,548	-		ABZR87_RS07380	0.89	-0.7
1,565,548	-		ABZR87_RS07380	0.89	-1.5
1,565,548	-		ABZR87_RS07380	0.89	-0.9
1,565,868	+				-1.3
1,565,898	+				+1.0
1,565,898	+				-0.4
1,565,898	+				-1.6
1,565,898	+				-1.2
1,565,899	-				-1.1
1,565,899	-				-0.5
1,565,899	-				-0.3
1,565,953	-				-1.6
1,565,953	-				+1.0
1,566,312	-		ABZR87_RS07385	0.70	+0.8
1,566,322	+		ABZR87_RS07385	0.72	+0.1
1,566,323	-		ABZR87_RS07385	0.72	-0.6
1,566,323	-		ABZR87_RS07385	0.72	-0.3
1,566,416	+				+0.3
1,566,416	+				+0.1
1,566,416	+				+0.5
1,566,417	-				-0.2
1,566,774	+		ABZR87_RS07390	0.12	+0.2
1,566,774	+		ABZR87_RS07390	0.12	-3.1
1,566,775	-		ABZR87_RS07390	0.12	+0.6
1,566,775	-		ABZR87_RS07390	0.12	+1.4
1,566,877	-		ABZR87_RS07390	0.18	+1.6
1,566,879	+		ABZR87_RS07390	0.18	-0.8
1,566,879	+		ABZR87_RS07390	0.18	+0.1
1,566,880	-		ABZR87_RS07390	0.18	-0.9
1,566,880	-		ABZR87_RS07390	0.18	-0.5
1,566,892	+		ABZR87_RS07390	0.19	+1.7
1,566,892	+		ABZR87_RS07390	0.19	-0.8
1,566,892	+		ABZR87_RS07390	0.19	-0.3
1,566,892	+		ABZR87_RS07390	0.19	-1.2
1,566,892	+		ABZR87_RS07390	0.19	-1.9
1,566,892	+		ABZR87_RS07390	0.19	+0.3
1,566,893	-		ABZR87_RS07390	0.19	-1.8
1,566,893	-		ABZR87_RS07390	0.19	-0.3
1,566,960	+		ABZR87_RS07390	0.22	-0.7
1,566,961	-		ABZR87_RS07390	0.22	+2.8