Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07340

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07330 and ABZR87_RS07335 are separated by 125 nucleotidesABZR87_RS07335 and ABZR87_RS07340 are separated by 16 nucleotidesABZR87_RS07340 and ABZR87_RS07345 are separated by 45 nucleotidesABZR87_RS07345 and ABZR87_RS07350 are separated by 1 nucleotides ABZR87_RS07330: ABZR87_RS07330 - hypothetical protein, at 1,551,736 to 1,553,025 _RS07330 ABZR87_RS07335: ABZR87_RS07335 - hypothetical protein, at 1,553,151 to 1,553,588 _RS07335 ABZR87_RS07340: ABZR87_RS07340 - C39 family peptidase, at 1,553,605 to 1,554,288 _RS07340 ABZR87_RS07345: ABZR87_RS07345 - hypothetical protein, at 1,554,334 to 1,554,879 _RS07345 ABZR87_RS07350: ABZR87_RS07350 - transporter, at 1,554,881 to 1,556,203 _RS07350 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1553.023 kb on + strandat 1553.023 kb on + strandat 1553.024 kb on - strandat 1553.024 kb on - strandat 1553.024 kb on - strandat 1553.064 kb on + strandat 1553.136 kb on + strandat 1553.136 kb on + strandat 1553.137 kb on - strandat 1553.149 kb on - strandat 1553.370 kb on + strand, within ABZR87_RS07335at 1553.370 kb on + strand, within ABZR87_RS07335at 1553.371 kb on - strand, within ABZR87_RS07335at 1553.394 kb on + strand, within ABZR87_RS07335at 1553.613 kb on + strandat 1553.613 kb on + strandat 1553.613 kb on + strandat 1553.613 kb on + strandat 1553.613 kb on + strandat 1553.614 kb on - strandat 1553.614 kb on - strandat 1553.614 kb on - strandat 1553.614 kb on - strandat 1553.614 kb on - strandat 1553.701 kb on + strand, within ABZR87_RS07340at 1553.701 kb on + strand, within ABZR87_RS07340at 1553.701 kb on + strand, within ABZR87_RS07340at 1553.701 kb on + strand, within ABZR87_RS07340at 1553.701 kb on + strand, within ABZR87_RS07340at 1553.702 kb on - strand, within ABZR87_RS07340at 1553.702 kb on - strand, within ABZR87_RS07340at 1553.702 kb on - strand, within ABZR87_RS07340at 1553.806 kb on + strand, within ABZR87_RS07340at 1553.806 kb on + strand, within ABZR87_RS07340at 1553.806 kb on + strand, within ABZR87_RS07340at 1553.807 kb on - strand, within ABZR87_RS07340at 1553.807 kb on - strand, within ABZR87_RS07340at 1553.807 kb on - strand, within ABZR87_RS07340at 1553.807 kb on - strand, within ABZR87_RS07340at 1553.807 kb on - strand, within ABZR87_RS07340at 1553.807 kb on - strand, within ABZR87_RS07340at 1553.812 kb on + strand, within ABZR87_RS07340at 1553.812 kb on + strand, within ABZR87_RS07340at 1553.854 kb on + strand, within ABZR87_RS07340at 1553.854 kb on + strand, within ABZR87_RS07340at 1553.854 kb on + strand, within ABZR87_RS07340at 1553.854 kb on + strand, within ABZR87_RS07340at 1553.854 kb on + strand, within ABZR87_RS07340at 1553.854 kb on + strand, within ABZR87_RS07340at 1553.855 kb on - strand, within ABZR87_RS07340at 1553.855 kb on - strand, within ABZR87_RS07340at 1553.855 kb on - strand, within ABZR87_RS07340at 1553.855 kb on - strand, within ABZR87_RS07340at 1553.855 kb on - strand, within ABZR87_RS07340at 1553.855 kb on - strand, within ABZR87_RS07340at 1553.855 kb on - strand, within ABZR87_RS07340at 1554.019 kb on + strand, within ABZR87_RS07340at 1554.410 kb on - strand, within ABZR87_RS07345at 1554.410 kb on - strand, within ABZR87_RS07345at 1554.410 kb on - strand, within ABZR87_RS07345at 1554.410 kb on - strand, within ABZR87_RS07345at 1554.556 kb on + strand, within ABZR87_RS07345at 1554.556 kb on + strand, within ABZR87_RS07345at 1554.556 kb on + strand, within ABZR87_RS07345at 1554.557 kb on - strand, within ABZR87_RS07345at 1554.557 kb on - strand, within ABZR87_RS07345at 1554.882 kb on + strandat 1554.991 kb on - strandat 1555.230 kb on + strand, within ABZR87_RS07350at 1555.231 kb on - strand, within ABZR87_RS07350

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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1,553,023 + +0.6
1,553,023 + -0.8
1,553,024 - -0.2
1,553,024 - +0.0
1,553,024 - -0.6
1,553,064 + +1.2
1,553,136 + -2.2
1,553,136 + +1.4
1,553,137 - +1.1
1,553,149 - -0.1
1,553,370 + ABZR87_RS07335 0.50 +0.7
1,553,370 + ABZR87_RS07335 0.50 +1.4
1,553,371 - ABZR87_RS07335 0.50 +0.1
1,553,394 + ABZR87_RS07335 0.55 -1.4
1,553,613 + -0.5
1,553,613 + -0.0
1,553,613 + -1.0
1,553,613 + -0.7
1,553,613 + +0.5
1,553,614 - +0.6
1,553,614 - +0.0
1,553,614 - -1.4
1,553,614 - +0.4
1,553,614 - -0.6
1,553,701 + ABZR87_RS07340 0.14 -0.1
1,553,701 + ABZR87_RS07340 0.14 +0.0
1,553,701 + ABZR87_RS07340 0.14 +1.0
1,553,701 + ABZR87_RS07340 0.14 -0.3
1,553,701 + ABZR87_RS07340 0.14 +1.4
1,553,702 - ABZR87_RS07340 0.14 +0.1
1,553,702 - ABZR87_RS07340 0.14 +0.8
1,553,702 - ABZR87_RS07340 0.14 -1.6
1,553,806 + ABZR87_RS07340 0.29 -1.0
1,553,806 + ABZR87_RS07340 0.29 +1.9
1,553,806 + ABZR87_RS07340 0.29 +0.7
1,553,807 - ABZR87_RS07340 0.30 -1.7
1,553,807 - ABZR87_RS07340 0.30 +0.9
1,553,807 - ABZR87_RS07340 0.30 +2.2
1,553,807 - ABZR87_RS07340 0.30 +0.4
1,553,807 - ABZR87_RS07340 0.30 +1.4
1,553,807 - ABZR87_RS07340 0.30 -0.3
1,553,812 + ABZR87_RS07340 0.30 +2.9
1,553,812 + ABZR87_RS07340 0.30 +0.8
1,553,854 + ABZR87_RS07340 0.36 +2.1
1,553,854 + ABZR87_RS07340 0.36 +1.6
1,553,854 + ABZR87_RS07340 0.36 -0.8
1,553,854 + ABZR87_RS07340 0.36 -1.5
1,553,854 + ABZR87_RS07340 0.36 -1.0
1,553,854 + ABZR87_RS07340 0.36 -0.5
1,553,855 - ABZR87_RS07340 0.37 -1.6
1,553,855 - ABZR87_RS07340 0.37 -1.0
1,553,855 - ABZR87_RS07340 0.37 -1.1
1,553,855 - ABZR87_RS07340 0.37 -0.0
1,553,855 - ABZR87_RS07340 0.37 -0.2
1,553,855 - ABZR87_RS07340 0.37 -0.4
1,553,855 - ABZR87_RS07340 0.37 -0.7
1,554,019 + ABZR87_RS07340 0.61 +1.6
1,554,410 - ABZR87_RS07345 0.14 -1.5
1,554,410 - ABZR87_RS07345 0.14 -1.5
1,554,410 - ABZR87_RS07345 0.14 -0.3
1,554,410 - ABZR87_RS07345 0.14 +0.5
1,554,556 + ABZR87_RS07345 0.41 -1.1
1,554,556 + ABZR87_RS07345 0.41 -0.2
1,554,556 + ABZR87_RS07345 0.41 -0.7
1,554,557 - ABZR87_RS07345 0.41 -0.8
1,554,557 - ABZR87_RS07345 0.41 -1.5
1,554,882 + +0.8
1,554,991 - +0.3
1,555,230 + ABZR87_RS07350 0.26 +0.6
1,555,231 - ABZR87_RS07350 0.26 -0.2

Or see this region's nucleotide sequence