Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07010

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07000 and ABZR87_RS07005 are separated by 14 nucleotidesABZR87_RS07005 and ABZR87_RS07010 overlap by 1 nucleotidesABZR87_RS07010 and ABZR87_RS07015 are separated by 101 nucleotides ABZR87_RS07000: ABZR87_RS07000 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,477,835 to 1,478,704 _RS07000 ABZR87_RS07005: ABZR87_RS07005 - lipoprotein insertase outer membrane protein LolB, at 1,478,719 to 1,479,342 _RS07005 ABZR87_RS07010: ABZR87_RS07010 - tetratricopeptide repeat protein, at 1,479,342 to 1,481,279 _RS07010 ABZR87_RS07015: ABZR87_RS07015 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 1,481,381 to 1,482,256 _RS07015 Position (kb) 1479 1480 1481 1482Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1478.721 kb on - strandat 1478.721 kb on - strandat 1478.843 kb on + strand, within ABZR87_RS07005at 1478.844 kb on - strand, within ABZR87_RS07005at 1478.844 kb on - strand, within ABZR87_RS07005at 1479.180 kb on - strand, within ABZR87_RS07005at 1479.180 kb on - strand, within ABZR87_RS07005at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.707 kb on - strand, within ABZR87_RS07010at 1479.707 kb on - strand, within ABZR87_RS07010at 1479.707 kb on - strand, within ABZR87_RS07010at 1479.707 kb on - strand, within ABZR87_RS07010at 1479.769 kb on + strand, within ABZR87_RS07010at 1479.770 kb on - strand, within ABZR87_RS07010at 1479.806 kb on - strand, within ABZR87_RS07010at 1479.812 kb on - strand, within ABZR87_RS07010at 1479.812 kb on - strand, within ABZR87_RS07010at 1480.163 kb on - strand, within ABZR87_RS07010at 1480.210 kb on + strand, within ABZR87_RS07010at 1480.211 kb on - strand, within ABZR87_RS07010at 1480.211 kb on - strand, within ABZR87_RS07010at 1480.211 kb on - strand, within ABZR87_RS07010at 1480.211 kb on - strand, within ABZR87_RS07010at 1480.211 kb on - strand, within ABZR87_RS07010at 1480.223 kb on - strand, within ABZR87_RS07010at 1480.223 kb on - strand, within ABZR87_RS07010at 1480.241 kb on - strand, within ABZR87_RS07010at 1480.361 kb on - strand, within ABZR87_RS07010at 1480.361 kb on - strand, within ABZR87_RS07010at 1480.361 kb on - strand, within ABZR87_RS07010at 1480.361 kb on - strand, within ABZR87_RS07010at 1480.934 kb on - strand, within ABZR87_RS07010at 1480.934 kb on - strand, within ABZR87_RS07010at 1480.934 kb on - strand, within ABZR87_RS07010at 1480.934 kb on - strand, within ABZR87_RS07010at 1480.934 kb on - strand, within ABZR87_RS07010at 1480.997 kb on - strand, within ABZR87_RS07010at 1480.997 kb on - strand, within ABZR87_RS07010at 1480.997 kb on - strand, within ABZR87_RS07010at 1480.997 kb on - strand, within ABZR87_RS07010at 1480.997 kb on - strand, within ABZR87_RS07010at 1481.315 kb on + strandat 1481.315 kb on + strandat 1481.315 kb on + strandat 1481.315 kb on + strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.328 kb on - strandat 1481.345 kb on - strandat 1481.434 kb on + strandat 1481.435 kb on - strandat 1481.435 kb on - strandat 1481.446 kb on + strandat 1481.446 kb on + strandat 1481.446 kb on + strandat 1481.447 kb on - strandat 1481.447 kb on - strandat 1481.464 kb on - strandat 1481.464 kb on - strandat 1481.555 kb on + strand, within ABZR87_RS07015at 1481.555 kb on + strand, within ABZR87_RS07015at 1481.555 kb on + strand, within ABZR87_RS07015at 1481.555 kb on + strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.650 kb on + strand, within ABZR87_RS07015at 1481.651 kb on - strand, within ABZR87_RS07015at 1481.706 kb on + strand, within ABZR87_RS07015at 1481.730 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.955 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1482.029 kb on + strand, within ABZR87_RS07015at 1482.131 kb on + strand, within ABZR87_RS07015at 1482.132 kb on - strand, within ABZR87_RS07015at 1482.132 kb on - strand, within ABZR87_RS07015at 1482.155 kb on + strand, within ABZR87_RS07015at 1482.156 kb on - strand, within ABZR87_RS07015at 1482.233 kb on + strandat 1482.233 kb on + strandat 1482.233 kb on + strandat 1482.234 kb on - strandat 1482.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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1,478,721 - +0.8
1,478,721 - +2.7
1,478,843 + ABZR87_RS07005 0.20 +0.9
1,478,844 - ABZR87_RS07005 0.20 -0.6
1,478,844 - ABZR87_RS07005 0.20 +0.4
1,479,180 - ABZR87_RS07005 0.74 +0.4
1,479,180 - ABZR87_RS07005 0.74 +0.6
1,479,608 - ABZR87_RS07010 0.14 -0.7
1,479,608 - ABZR87_RS07010 0.14 +0.9
1,479,608 - ABZR87_RS07010 0.14 -0.1
1,479,608 - ABZR87_RS07010 0.14 -1.6
1,479,608 - ABZR87_RS07010 0.14 +0.2
1,479,608 - ABZR87_RS07010 0.14 -1.5
1,479,608 - ABZR87_RS07010 0.14 -0.6
1,479,608 - ABZR87_RS07010 0.14 +2.0
1,479,707 - ABZR87_RS07010 0.19 -0.1
1,479,707 - ABZR87_RS07010 0.19 -1.9
1,479,707 - ABZR87_RS07010 0.19 -0.9
1,479,707 - ABZR87_RS07010 0.19 -0.5
1,479,769 + ABZR87_RS07010 0.22 +3.6
1,479,770 - ABZR87_RS07010 0.22 -0.7
1,479,806 - ABZR87_RS07010 0.24 -0.1
1,479,812 - ABZR87_RS07010 0.24 +0.5
1,479,812 - ABZR87_RS07010 0.24 +0.3
1,480,163 - ABZR87_RS07010 0.42 +1.0
1,480,210 + ABZR87_RS07010 0.45 +3.6
1,480,211 - ABZR87_RS07010 0.45 -1.0
1,480,211 - ABZR87_RS07010 0.45 -0.7
1,480,211 - ABZR87_RS07010 0.45 -1.0
1,480,211 - ABZR87_RS07010 0.45 +0.4
1,480,211 - ABZR87_RS07010 0.45 +0.2
1,480,223 - ABZR87_RS07010 0.45 +3.9
1,480,223 - ABZR87_RS07010 0.45 +1.4
1,480,241 - ABZR87_RS07010 0.46 -0.3
1,480,361 - ABZR87_RS07010 0.53 +1.6
1,480,361 - ABZR87_RS07010 0.53 -1.0
1,480,361 - ABZR87_RS07010 0.53 +0.1
1,480,361 - ABZR87_RS07010 0.53 -0.2
1,480,934 - ABZR87_RS07010 0.82 +1.3
1,480,934 - ABZR87_RS07010 0.82 -1.6
1,480,934 - ABZR87_RS07010 0.82 -1.6
1,480,934 - ABZR87_RS07010 0.82 -1.6
1,480,934 - ABZR87_RS07010 0.82 -2.0
1,480,997 - ABZR87_RS07010 0.85 -0.5
1,480,997 - ABZR87_RS07010 0.85 -0.5
1,480,997 - ABZR87_RS07010 0.85 +0.2
1,480,997 - ABZR87_RS07010 0.85 -0.7
1,480,997 - ABZR87_RS07010 0.85 +1.4
1,481,315 + -0.5
1,481,315 + -1.0
1,481,315 + +1.1
1,481,315 + +0.0
1,481,316 - -1.1
1,481,316 - -0.3
1,481,316 - -0.1
1,481,316 - +0.2
1,481,316 - +0.4
1,481,316 - +1.9
1,481,316 - -0.4
1,481,328 - -0.6
1,481,345 - -0.3
1,481,434 + +0.3
1,481,435 - -0.4
1,481,435 - +0.6
1,481,446 + -1.1
1,481,446 + +0.1
1,481,446 + -0.3
1,481,447 - +0.2
1,481,447 - -0.5
1,481,464 - -0.6
1,481,464 - -2.3
1,481,555 + ABZR87_RS07015 0.20 +1.2
1,481,555 + ABZR87_RS07015 0.20 -0.4
1,481,555 + ABZR87_RS07015 0.20 -0.9
1,481,555 + ABZR87_RS07015 0.20 +2.0
1,481,556 - ABZR87_RS07015 0.20 -0.4
1,481,556 - ABZR87_RS07015 0.20 +0.4
1,481,556 - ABZR87_RS07015 0.20 -0.2
1,481,556 - ABZR87_RS07015 0.20 -0.9
1,481,556 - ABZR87_RS07015 0.20 +1.0
1,481,650 + ABZR87_RS07015 0.31 -0.0
1,481,651 - ABZR87_RS07015 0.31 +2.1
1,481,706 + ABZR87_RS07015 0.37 -1.7
1,481,730 + ABZR87_RS07015 0.40 -1.6
1,481,953 + ABZR87_RS07015 0.65 +1.4
1,481,953 + ABZR87_RS07015 0.65 -0.7
1,481,953 + ABZR87_RS07015 0.65 -1.0
1,481,953 + ABZR87_RS07015 0.65 +0.7
1,481,953 + ABZR87_RS07015 0.65 -1.1
1,481,953 + ABZR87_RS07015 0.65 +0.9
1,481,953 + ABZR87_RS07015 0.65 -2.5
1,481,953 + ABZR87_RS07015 0.65 -0.2
1,481,953 + ABZR87_RS07015 0.65 -0.4
1,481,954 - ABZR87_RS07015 0.65 +0.4
1,481,954 - ABZR87_RS07015 0.65 -0.9
1,481,954 - ABZR87_RS07015 0.65 +1.1
1,481,954 - ABZR87_RS07015 0.65 -0.8
1,481,954 - ABZR87_RS07015 0.65 -0.4
1,481,954 - ABZR87_RS07015 0.65 +1.5
1,481,955 + ABZR87_RS07015 0.66 +0.8
1,481,957 + ABZR87_RS07015 0.66 +0.5
1,481,957 + ABZR87_RS07015 0.66 -0.6
1,481,957 + ABZR87_RS07015 0.66 +1.6
1,481,957 + ABZR87_RS07015 0.66 +1.3
1,481,957 + ABZR87_RS07015 0.66 +1.3
1,481,957 + ABZR87_RS07015 0.66 -1.1
1,481,957 + ABZR87_RS07015 0.66 +0.1
1,481,958 - ABZR87_RS07015 0.66 -0.2
1,481,958 - ABZR87_RS07015 0.66 -0.8
1,481,958 - ABZR87_RS07015 0.66 +0.3
1,481,958 - ABZR87_RS07015 0.66 +0.2
1,481,958 - ABZR87_RS07015 0.66 +1.3
1,481,958 - ABZR87_RS07015 0.66 -0.8
1,481,958 - ABZR87_RS07015 0.66 +0.4
1,481,958 - ABZR87_RS07015 0.66 -0.3
1,482,029 + ABZR87_RS07015 0.74 -2.2
1,482,131 + ABZR87_RS07015 0.86 -0.2
1,482,132 - ABZR87_RS07015 0.86 -0.7
1,482,132 - ABZR87_RS07015 0.86 -0.9
1,482,155 + ABZR87_RS07015 0.88 -0.3
1,482,156 - ABZR87_RS07015 0.88 -0.7
1,482,233 + -0.6
1,482,233 + -1.6
1,482,233 + -2.2
1,482,234 - -0.8
1,482,234 - +0.2

Or see this region's nucleotide sequence