Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06665

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06655 and ABZR87_RS06660 are separated by 115 nucleotidesABZR87_RS06660 and ABZR87_RS06665 are separated by 3 nucleotidesABZR87_RS06665 and ABZR87_RS06670 are separated by 163 nucleotidesABZR87_RS06670 and ABZR87_RS06675 are separated by 14 nucleotides ABZR87_RS06655: ABZR87_RS06655 - hypothetical protein, at 1,416,119 to 1,416,688 _RS06655 ABZR87_RS06660: ABZR87_RS06660 - LysE family transporter, at 1,416,804 to 1,417,445 _RS06660 ABZR87_RS06665: ABZR87_RS06665 - MFS transporter, at 1,417,449 to 1,418,876 _RS06665 ABZR87_RS06670: ABZR87_RS06670 - MarR family transcriptional regulator, at 1,419,040 to 1,419,537 _RS06670 ABZR87_RS06675: ABZR87_RS06675 - YifB family Mg chelatase-like AAA ATPase, at 1,419,552 to 1,421,084 _RS06675 Position (kb) 1417 1418 1419Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1416.593 kb on + strand, within ABZR87_RS06655at 1416.683 kb on + strandat 1416.683 kb on + strandat 1416.683 kb on + strandat 1416.684 kb on - strandat 1416.684 kb on - strandat 1416.684 kb on - strandat 1416.686 kb on + strandat 1416.686 kb on + strandat 1416.686 kb on + strandat 1416.686 kb on + strandat 1416.687 kb on - strandat 1416.687 kb on - strandat 1416.687 kb on - strandat 1416.748 kb on - strandat 1416.760 kb on + strandat 1416.760 kb on + strandat 1416.761 kb on - strandat 1416.767 kb on + strandat 1416.768 kb on - strandat 1416.774 kb on + strandat 1416.774 kb on + strandat 1416.774 kb on + strandat 1416.775 kb on - strandat 1416.775 kb on - strandat 1416.775 kb on - strandat 1416.775 kb on - strandat 1417.047 kb on + strand, within ABZR87_RS06660at 1417.047 kb on + strand, within ABZR87_RS06660at 1417.047 kb on + strand, within ABZR87_RS06660at 1417.047 kb on + strand, within ABZR87_RS06660at 1417.047 kb on + strand, within ABZR87_RS06660at 1417.048 kb on - strand, within ABZR87_RS06660at 1417.048 kb on - strand, within ABZR87_RS06660at 1417.048 kb on - strand, within ABZR87_RS06660at 1417.048 kb on - strand, within ABZR87_RS06660at 1417.048 kb on - strand, within ABZR87_RS06660at 1417.056 kb on + strand, within ABZR87_RS06660at 1417.056 kb on + strand, within ABZR87_RS06660at 1417.056 kb on + strand, within ABZR87_RS06660at 1417.057 kb on - strand, within ABZR87_RS06660at 1417.057 kb on - strand, within ABZR87_RS06660at 1417.057 kb on - strand, within ABZR87_RS06660at 1417.451 kb on - strandat 1417.589 kb on + strandat 1417.589 kb on + strandat 1417.589 kb on + strandat 1417.589 kb on + strandat 1417.589 kb on + strandat 1417.589 kb on + strandat 1417.590 kb on - strandat 1417.648 kb on - strand, within ABZR87_RS06665at 1417.648 kb on - strand, within ABZR87_RS06665at 1417.942 kb on + strand, within ABZR87_RS06665at 1417.942 kb on + strand, within ABZR87_RS06665at 1417.943 kb on - strand, within ABZR87_RS06665at 1418.038 kb on - strand, within ABZR87_RS06665at 1418.043 kb on + strand, within ABZR87_RS06665at 1418.044 kb on + strand, within ABZR87_RS06665at 1418.044 kb on + strand, within ABZR87_RS06665at 1418.045 kb on - strand, within ABZR87_RS06665at 1418.045 kb on - strand, within ABZR87_RS06665at 1418.074 kb on + strand, within ABZR87_RS06665at 1418.074 kb on + strand, within ABZR87_RS06665at 1418.074 kb on + strand, within ABZR87_RS06665at 1418.074 kb on + strand, within ABZR87_RS06665at 1418.181 kb on - strand, within ABZR87_RS06665at 1418.362 kb on + strand, within ABZR87_RS06665at 1418.362 kb on + strand, within ABZR87_RS06665at 1418.362 kb on + strand, within ABZR87_RS06665at 1418.362 kb on + strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.482 kb on + strand, within ABZR87_RS06665at 1418.482 kb on + strand, within ABZR87_RS06665at 1418.482 kb on + strand, within ABZR87_RS06665at 1418.482 kb on + strand, within ABZR87_RS06665at 1418.483 kb on - strand, within ABZR87_RS06665at 1418.483 kb on - strand, within ABZR87_RS06665at 1418.483 kb on - strand, within ABZR87_RS06665at 1418.523 kb on + strand, within ABZR87_RS06665at 1418.523 kb on + strand, within ABZR87_RS06665at 1418.524 kb on - strand, within ABZR87_RS06665at 1418.524 kb on - strand, within ABZR87_RS06665at 1418.608 kb on + strand, within ABZR87_RS06665at 1418.609 kb on - strand, within ABZR87_RS06665at 1418.609 kb on - strand, within ABZR87_RS06665at 1418.701 kb on + strand, within ABZR87_RS06665at 1418.701 kb on + strand, within ABZR87_RS06665at 1418.701 kb on + strand, within ABZR87_RS06665at 1418.701 kb on + strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.758 kb on + strandat 1418.759 kb on - strandat 1418.974 kb on - strandat 1419.182 kb on - strand, within ABZR87_RS06670at 1419.241 kb on + strand, within ABZR87_RS06670at 1419.265 kb on + strand, within ABZR87_RS06670at 1419.266 kb on - strand, within ABZR87_RS06670at 1419.266 kb on - strand, within ABZR87_RS06670at 1419.577 kb on + strandat 1419.668 kb on - strandat 1419.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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1,416,593 + ABZR87_RS06655 0.83 -0.4
1,416,683 + -0.1
1,416,683 + +1.1
1,416,683 + +0.5
1,416,684 - -2.6
1,416,684 - -0.4
1,416,684 - +0.1
1,416,686 + -0.5
1,416,686 + +2.0
1,416,686 + +0.0
1,416,686 + -0.6
1,416,687 - -1.2
1,416,687 - -1.0
1,416,687 - +1.4
1,416,748 - -0.3
1,416,760 + -0.3
1,416,760 + +2.9
1,416,761 - +1.6
1,416,767 + +1.7
1,416,768 - +0.1
1,416,774 + +0.3
1,416,774 + -0.4
1,416,774 + +0.7
1,416,775 - -0.4
1,416,775 - +0.9
1,416,775 - +0.1
1,416,775 - -2.0
1,417,047 + ABZR87_RS06660 0.38 -0.5
1,417,047 + ABZR87_RS06660 0.38 -0.4
1,417,047 + ABZR87_RS06660 0.38 -1.1
1,417,047 + ABZR87_RS06660 0.38 +1.3
1,417,047 + ABZR87_RS06660 0.38 +1.0
1,417,048 - ABZR87_RS06660 0.38 +0.0
1,417,048 - ABZR87_RS06660 0.38 +0.2
1,417,048 - ABZR87_RS06660 0.38 -0.3
1,417,048 - ABZR87_RS06660 0.38 +0.5
1,417,048 - ABZR87_RS06660 0.38 -0.5
1,417,056 + ABZR87_RS06660 0.39 -1.8
1,417,056 + ABZR87_RS06660 0.39 +0.6
1,417,056 + ABZR87_RS06660 0.39 -0.0
1,417,057 - ABZR87_RS06660 0.39 +0.4
1,417,057 - ABZR87_RS06660 0.39 -0.9
1,417,057 - ABZR87_RS06660 0.39 +0.2
1,417,451 - +1.3
1,417,589 + -1.3
1,417,589 + -0.3
1,417,589 + +0.8
1,417,589 + -0.3
1,417,589 + -1.6
1,417,589 + -0.5
1,417,590 - -0.0
1,417,648 - ABZR87_RS06665 0.14 -2.2
1,417,648 - ABZR87_RS06665 0.14 +0.4
1,417,942 + ABZR87_RS06665 0.35 +0.4
1,417,942 + ABZR87_RS06665 0.35 -0.0
1,417,943 - ABZR87_RS06665 0.35 +0.1
1,418,038 - ABZR87_RS06665 0.41 -0.5
1,418,043 + ABZR87_RS06665 0.42 -0.9
1,418,044 + ABZR87_RS06665 0.42 -0.7
1,418,044 + ABZR87_RS06665 0.42 -0.1
1,418,045 - ABZR87_RS06665 0.42 -0.1
1,418,045 - ABZR87_RS06665 0.42 -2.2
1,418,074 + ABZR87_RS06665 0.44 +0.6
1,418,074 + ABZR87_RS06665 0.44 +0.9
1,418,074 + ABZR87_RS06665 0.44 +3.2
1,418,074 + ABZR87_RS06665 0.44 -0.9
1,418,181 - ABZR87_RS06665 0.51 -0.8
1,418,362 + ABZR87_RS06665 0.64 -1.1
1,418,362 + ABZR87_RS06665 0.64 -1.2
1,418,362 + ABZR87_RS06665 0.64 +2.0
1,418,362 + ABZR87_RS06665 0.64 +0.0
1,418,363 - ABZR87_RS06665 0.64 +0.7
1,418,363 - ABZR87_RS06665 0.64 +2.5
1,418,363 - ABZR87_RS06665 0.64 -1.7
1,418,363 - ABZR87_RS06665 0.64 -1.2
1,418,363 - ABZR87_RS06665 0.64 -0.6
1,418,363 - ABZR87_RS06665 0.64 -1.2
1,418,482 + ABZR87_RS06665 0.72 -0.8
1,418,482 + ABZR87_RS06665 0.72 +1.3
1,418,482 + ABZR87_RS06665 0.72 +0.7
1,418,482 + ABZR87_RS06665 0.72 +1.2
1,418,483 - ABZR87_RS06665 0.72 +1.0
1,418,483 - ABZR87_RS06665 0.72 -0.3
1,418,483 - ABZR87_RS06665 0.72 +0.2
1,418,523 + ABZR87_RS06665 0.75 +0.4
1,418,523 + ABZR87_RS06665 0.75 -0.6
1,418,524 - ABZR87_RS06665 0.75 +1.4
1,418,524 - ABZR87_RS06665 0.75 +0.0
1,418,608 + ABZR87_RS06665 0.81 -0.6
1,418,609 - ABZR87_RS06665 0.81 -0.0
1,418,609 - ABZR87_RS06665 0.81 -0.2
1,418,701 + ABZR87_RS06665 0.88 +1.1
1,418,701 + ABZR87_RS06665 0.88 +1.4
1,418,701 + ABZR87_RS06665 0.88 -0.8
1,418,701 + ABZR87_RS06665 0.88 -2.7
1,418,702 - ABZR87_RS06665 0.88 +0.5
1,418,702 - ABZR87_RS06665 0.88 +0.4
1,418,702 - ABZR87_RS06665 0.88 -1.7
1,418,702 - ABZR87_RS06665 0.88 -0.5
1,418,702 - ABZR87_RS06665 0.88 -0.5
1,418,702 - ABZR87_RS06665 0.88 +2.6
1,418,702 - ABZR87_RS06665 0.88 +0.1
1,418,758 + -1.3
1,418,759 - +1.2
1,418,974 - +0.6
1,419,182 - ABZR87_RS06670 0.29 -1.7
1,419,241 + ABZR87_RS06670 0.40 +0.5
1,419,265 + ABZR87_RS06670 0.45 +0.7
1,419,266 - ABZR87_RS06670 0.45 -0.5
1,419,266 - ABZR87_RS06670 0.45 -0.4
1,419,577 + -0.2
1,419,668 - -0.8
1,419,668 - -0.3

Or see this region's nucleotide sequence