Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06235

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06225 and ABZR87_RS06230 are separated by 6 nucleotidesABZR87_RS06230 and ABZR87_RS06235 are separated by 61 nucleotidesABZR87_RS06235 and ABZR87_RS06240 are separated by 12 nucleotidesABZR87_RS06240 and ABZR87_RS06245 are separated by 10 nucleotidesABZR87_RS06245 and ABZR87_RS06250 are separated by 22 nucleotides ABZR87_RS06225: ABZR87_RS06225 - AMP-binding protein, at 1,329,760 to 1,331,346 _RS06225 ABZR87_RS06230: ABZR87_RS06230 - TetR/AcrR family transcriptional regulator, at 1,331,353 to 1,332,042 _RS06230 ABZR87_RS06235: ABZR87_RS06235 - MBL fold metallo-hydrolase, at 1,332,104 to 1,333,057 _RS06235 ABZR87_RS06240: ABZR87_RS06240 - DUF1289 domain-containing protein, at 1,333,070 to 1,333,336 _RS06240 ABZR87_RS06245: ABZR87_RS06245 - YbaK/EbsC family protein, at 1,333,347 to 1,333,847 _RS06245 ABZR87_RS06250: ABZR87_RS06250 - hydroxymethylglutaryl-CoA lyase, at 1,333,870 to 1,334,799 _RS06250 Position (kb) 1332 1333 1334Strain fitness (log2 ratio) -2 -1 0 1 2at 1331.355 kb on - strandat 1331.355 kb on - strandat 1331.376 kb on + strandat 1331.377 kb on - strandat 1331.377 kb on - strandat 1331.441 kb on + strand, within ABZR87_RS06230at 1331.441 kb on + strand, within ABZR87_RS06230at 1331.442 kb on - strand, within ABZR87_RS06230at 1331.442 kb on - strand, within ABZR87_RS06230at 1331.442 kb on - strand, within ABZR87_RS06230at 1331.442 kb on - strand, within ABZR87_RS06230at 1331.558 kb on + strand, within ABZR87_RS06230at 1331.559 kb on - strand, within ABZR87_RS06230at 1331.618 kb on + strand, within ABZR87_RS06230at 1331.663 kb on + strand, within ABZR87_RS06230at 1331.664 kb on - strand, within ABZR87_RS06230at 1331.804 kb on + strand, within ABZR87_RS06230at 1331.804 kb on + strand, within ABZR87_RS06230at 1331.804 kb on + strand, within ABZR87_RS06230at 1331.804 kb on + strand, within ABZR87_RS06230at 1331.805 kb on - strand, within ABZR87_RS06230at 1331.805 kb on - strand, within ABZR87_RS06230at 1332.357 kb on + strand, within ABZR87_RS06235at 1332.357 kb on + strand, within ABZR87_RS06235at 1332.358 kb on - strand, within ABZR87_RS06235at 1332.726 kb on + strand, within ABZR87_RS06235at 1332.726 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.799 kb on - strand, within ABZR87_RS06235at 1332.799 kb on - strand, within ABZR87_RS06235at 1332.799 kb on - strand, within ABZR87_RS06235at 1333.090 kb on + strandat 1333.459 kb on + strand, within ABZR87_RS06245at 1333.459 kb on + strand, within ABZR87_RS06245at 1333.459 kb on + strand, within ABZR87_RS06245at 1333.535 kb on - strand, within ABZR87_RS06245at 1333.833 kb on - strandat 1333.875 kb on + strandat 1333.876 kb on - strandat 1334.030 kb on + strand, within ABZR87_RS06250at 1334.030 kb on + strand, within ABZR87_RS06250at 1334.030 kb on + strand, within ABZR87_RS06250at 1334.031 kb on - strand, within ABZR87_RS06250at 1334.031 kb on - strand, within ABZR87_RS06250

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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1,331,355 - +1.3
1,331,355 - -2.4
1,331,376 + +1.1
1,331,377 - +0.3
1,331,377 - +1.0
1,331,441 + ABZR87_RS06230 0.13 -1.4
1,331,441 + ABZR87_RS06230 0.13 -0.8
1,331,442 - ABZR87_RS06230 0.13 -0.4
1,331,442 - ABZR87_RS06230 0.13 +0.3
1,331,442 - ABZR87_RS06230 0.13 -2.4
1,331,442 - ABZR87_RS06230 0.13 -1.3
1,331,558 + ABZR87_RS06230 0.30 +1.5
1,331,559 - ABZR87_RS06230 0.30 +0.3
1,331,618 + ABZR87_RS06230 0.38 -0.2
1,331,663 + ABZR87_RS06230 0.45 -0.0
1,331,664 - ABZR87_RS06230 0.45 +0.4
1,331,804 + ABZR87_RS06230 0.65 -1.8
1,331,804 + ABZR87_RS06230 0.65 -2.2
1,331,804 + ABZR87_RS06230 0.65 -0.1
1,331,804 + ABZR87_RS06230 0.65 -1.0
1,331,805 - ABZR87_RS06230 0.66 -1.8
1,331,805 - ABZR87_RS06230 0.66 +0.2
1,332,357 + ABZR87_RS06235 0.27 +0.5
1,332,357 + ABZR87_RS06235 0.27 +2.0
1,332,358 - ABZR87_RS06235 0.27 +0.4
1,332,726 + ABZR87_RS06235 0.65 +0.2
1,332,726 + ABZR87_RS06235 0.65 +1.3
1,332,798 + ABZR87_RS06235 0.73 +1.3
1,332,798 + ABZR87_RS06235 0.73 +0.4
1,332,798 + ABZR87_RS06235 0.73 +2.1
1,332,798 + ABZR87_RS06235 0.73 -0.5
1,332,798 + ABZR87_RS06235 0.73 -2.4
1,332,798 + ABZR87_RS06235 0.73 +0.1
1,332,798 + ABZR87_RS06235 0.73 +0.3
1,332,799 - ABZR87_RS06235 0.73 +0.2
1,332,799 - ABZR87_RS06235 0.73 -0.6
1,332,799 - ABZR87_RS06235 0.73 -0.5
1,333,090 + -0.6
1,333,459 + ABZR87_RS06245 0.22 -0.6
1,333,459 + ABZR87_RS06245 0.22 +0.1
1,333,459 + ABZR87_RS06245 0.22 -0.9
1,333,535 - ABZR87_RS06245 0.38 -1.2
1,333,833 - +0.7
1,333,875 + -0.7
1,333,876 - -0.0
1,334,030 + ABZR87_RS06250 0.17 -0.8
1,334,030 + ABZR87_RS06250 0.17 -0.4
1,334,030 + ABZR87_RS06250 0.17 +1.2
1,334,031 - ABZR87_RS06250 0.17 +1.8
1,334,031 - ABZR87_RS06250 0.17 -0.2

Or see this region's nucleotide sequence