Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06080

Experiment: root sample 5; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root sample 5; outgrowth in LB
1,297,869	+		ABZR87_RS06075	0.33	-0.0
1,297,869	+		ABZR87_RS06075	0.33	-0.6
1,297,869	+		ABZR87_RS06075	0.33	+1.0
1,297,870	-		ABZR87_RS06075	0.33	+0.1
1,298,283	+		ABZR87_RS06075	0.72	+0.3
1,298,283	+		ABZR87_RS06075	0.72	-1.4
1,298,283	+		ABZR87_RS06075	0.72	+0.2
1,298,283	+		ABZR87_RS06075	0.72	-1.7
1,298,283	+		ABZR87_RS06075	0.72	-0.4
1,298,284	-		ABZR87_RS06075	0.72	+0.6
1,298,284	-		ABZR87_RS06075	0.72	+0.1
1,298,442	+		ABZR87_RS06075	0.87	+1.3
1,298,442	+		ABZR87_RS06075	0.87	-0.2
1,298,443	-		ABZR87_RS06075	0.87	-0.6
1,298,443	-		ABZR87_RS06075	0.87	+0.4
1,298,597	+				-1.7
1,298,597	+				-0.4
1,298,597	+				+0.2
1,298,597	+				-0.5
1,298,597	+				-0.3
1,298,598	-				-0.9
1,298,598	-				-0.9
1,298,694	+				+1.0
1,298,694	+				-0.7
1,298,851	-		ABZR87_RS06080	0.11	+2.3
1,298,851	-		ABZR87_RS06080	0.11	-0.0
1,298,892	+		ABZR87_RS06080	0.15	-1.0
1,298,892	+		ABZR87_RS06080	0.15	-1.0
1,298,892	+		ABZR87_RS06080	0.15	-0.4
1,298,892	+		ABZR87_RS06080	0.15	+0.5
1,298,949	+		ABZR87_RS06080	0.21	-0.7
1,298,950	-		ABZR87_RS06080	0.21	+0.5
1,298,950	-		ABZR87_RS06080	0.21	-0.9
1,298,991	+		ABZR87_RS06080	0.25	-0.1
1,299,015	+		ABZR87_RS06080	0.27	-1.7
1,299,016	-		ABZR87_RS06080	0.27	+2.2
1,299,117	+		ABZR87_RS06080	0.36	+0.3
1,299,117	+		ABZR87_RS06080	0.36	-1.0
1,299,118	-		ABZR87_RS06080	0.36	-1.2
1,299,118	-		ABZR87_RS06080	0.36	-0.9
1,299,118	-		ABZR87_RS06080	0.36	+1.0
1,299,144	+		ABZR87_RS06080	0.39	+0.6
1,299,145	-		ABZR87_RS06080	0.39	-0.3
1,299,145	-		ABZR87_RS06080	0.39	+0.6
1,299,183	+		ABZR87_RS06080	0.43	+0.4
1,299,183	+		ABZR87_RS06080	0.43	+2.6
1,299,184	-		ABZR87_RS06080	0.43	+0.1
1,299,198	+		ABZR87_RS06080	0.44	+0.3
1,299,199	-		ABZR87_RS06080	0.44	-0.4
1,299,199	-		ABZR87_RS06080	0.44	+0.0
1,299,215	-		ABZR87_RS06080	0.46	-0.3
1,299,216	+		ABZR87_RS06080	0.46	-0.5
1,299,216	+		ABZR87_RS06080	0.46	-0.2
1,299,216	+		ABZR87_RS06080	0.46	-0.9
1,299,217	-		ABZR87_RS06080	0.46	+0.7
1,299,279	+		ABZR87_RS06080	0.51	-1.9
1,299,279	+		ABZR87_RS06080	0.51	-2.0
1,299,280	-		ABZR87_RS06080	0.52	-1.4
1,299,280	-		ABZR87_RS06080	0.52	+1.2
1,299,280	-		ABZR87_RS06080	0.52	+0.4
1,299,280	-		ABZR87_RS06080	0.52	-0.3
1,299,321	+		ABZR87_RS06080	0.55	-2.9
1,299,321	+		ABZR87_RS06080	0.55	+1.6
1,299,321	+		ABZR87_RS06080	0.55	-0.0
1,299,322	-		ABZR87_RS06080	0.56	+1.4
1,299,322	-		ABZR87_RS06080	0.56	+1.0
1,299,322	-		ABZR87_RS06080	0.56	-0.8
1,299,322	-		ABZR87_RS06080	0.56	+0.2
1,299,322	-		ABZR87_RS06080	0.56	-0.6
1,299,322	-		ABZR87_RS06080	0.56	+0.6
1,299,322	-		ABZR87_RS06080	0.56	+0.3
1,299,322	-		ABZR87_RS06080	0.56	+1.5
1,299,339	+		ABZR87_RS06080	0.57	-0.9
1,299,339	+		ABZR87_RS06080	0.57	-0.3
1,299,340	-		ABZR87_RS06080	0.57	-0.3
1,299,340	-		ABZR87_RS06080	0.57	-0.4
1,299,393	+		ABZR87_RS06080	0.62	+0.3
1,299,394	-		ABZR87_RS06080	0.62	-1.0
1,299,394	-		ABZR87_RS06080	0.62	-1.1
1,299,489	+		ABZR87_RS06080	0.71	-0.6
1,299,489	+		ABZR87_RS06080	0.71	+0.2
1,299,489	+		ABZR87_RS06080	0.71	+0.1
1,299,490	-		ABZR87_RS06080	0.71	+0.1
1,299,490	-		ABZR87_RS06080	0.71	+1.1
1,299,490	-		ABZR87_RS06080	0.71	+0.9
1,299,490	-		ABZR87_RS06080	0.71	-0.0
1,299,490	-		ABZR87_RS06080	0.71	-0.4
1,299,490	-		ABZR87_RS06080	0.71	+0.3
1,299,490	-		ABZR87_RS06080	0.71	-0.3
1,299,490	-		ABZR87_RS06080	0.71	-2.4
1,299,812	+				-0.1
1,299,812	+				+0.3
1,299,866	+				-0.9
1,299,867	-				-0.4
1,299,907	+				-1.0
1,299,907	+				-0.8
1,299,907	+				+1.2
1,299,907	+				-0.4
1,299,907	+				-0.8
1,299,908	-				-0.0
1,299,908	-				-0.2
1,299,908	-				-0.2
1,299,908	-				-1.5
1,299,908	-				-1.5
1,299,908	-				-0.3
1,300,059	+				+0.6
1,300,082	+				-0.6
1,300,083	-				+2.0
1,300,152	+		ABZR87_RS06085	0.11	-1.5
1,300,152	+		ABZR87_RS06085	0.11	-0.2
1,300,153	-		ABZR87_RS06085	0.11	-0.5
1,300,153	-		ABZR87_RS06085	0.11	-0.9
1,300,153	-		ABZR87_RS06085	0.11	+0.0
1,300,210	+		ABZR87_RS06085	0.19	-0.9
1,300,210	+		ABZR87_RS06085	0.19	+0.3
1,300,210	+		ABZR87_RS06085	0.19	-0.3
1,300,210	+		ABZR87_RS06085	0.19	-1.3
1,300,210	+		ABZR87_RS06085	0.19	-1.0
1,300,210	+		ABZR87_RS06085	0.19	-1.0
1,300,211	-		ABZR87_RS06085	0.19	+0.6
1,300,211	-		ABZR87_RS06085	0.19	-1.7
1,300,211	-		ABZR87_RS06085	0.19	+1.0
1,300,211	-		ABZR87_RS06085	0.19	-0.6
1,300,211	-		ABZR87_RS06085	0.19	-1.1
1,300,211	-		ABZR87_RS06085	0.19	-1.1
1,300,211	-		ABZR87_RS06085	0.19	+0.6
1,300,211	-		ABZR87_RS06085	0.19	+0.0
1,300,229	+		ABZR87_RS06085	0.22	-0.9
1,300,229	+		ABZR87_RS06085	0.22	+0.5
1,300,230	-		ABZR87_RS06085	0.22	-0.7
1,300,230	-		ABZR87_RS06085	0.22	-2.0
1,300,230	-		ABZR87_RS06085	0.22	-1.0
1,300,230	-		ABZR87_RS06085	0.22	-1.0
1,300,596	+		ABZR87_RS06085	0.73	-1.6
1,300,596	+		ABZR87_RS06085	0.73	+1.6
1,300,597	-		ABZR87_RS06085	0.73	+1.0
1,300,597	-		ABZR87_RS06085	0.73	-1.9
1,300,597	-		ABZR87_RS06085	0.73	+1.7
1,300,597	-		ABZR87_RS06085	0.73	+0.3
1,300,713	+		ABZR87_RS06085	0.89	-1.5
1,300,713	+		ABZR87_RS06085	0.89	-2.4
1,300,713	+		ABZR87_RS06085	0.89	+0.3
1,300,713	+		ABZR87_RS06085	0.89	+0.0
1,300,713	+		ABZR87_RS06085	0.89	-1.9
1,300,713	+		ABZR87_RS06085	0.89	+1.8
1,300,714	-		ABZR87_RS06085	0.89	-1.0
1,300,714	-		ABZR87_RS06085	0.89	-0.1
1,300,714	-		ABZR87_RS06085	0.89	-0.6
1,300,714	-		ABZR87_RS06085	0.89	-0.1
1,300,714	-		ABZR87_RS06085	0.89	-1.5
1,300,714	-		ABZR87_RS06085	0.89	+0.5
1,300,714	-		ABZR87_RS06085	0.89	-1.5
1,300,714	-		ABZR87_RS06085	0.89	-0.2
1,300,714	-		ABZR87_RS06085	0.89	+0.7