Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06005

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05995 and ABZR87_RS06000 overlap by 4 nucleotidesABZR87_RS06000 and ABZR87_RS06005 are separated by 370 nucleotidesABZR87_RS06005 and ABZR87_RS06010 are separated by 61 nucleotidesABZR87_RS06010 and ABZR87_RS06015 are separated by 94 nucleotides ABZR87_RS05995: ABZR87_RS05995 - VOC family protein, at 1,279,458 to 1,279,874 _RS05995 ABZR87_RS06000: ABZR87_RS06000 - hypothetical protein, at 1,279,871 to 1,280,146 _RS06000 ABZR87_RS06005: ABZR87_RS06005 - MFS transporter, at 1,280,517 to 1,281,713 _RS06005 ABZR87_RS06010: ABZR87_RS06010 - glutathione binding-like protein, at 1,281,775 to 1,282,482 _RS06010 ABZR87_RS06015: ABZR87_RS06015 - low temperature requirement protein A, at 1,282,577 to 1,283,770 _RS06015 Position (kb) 1280 1281 1282Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.522 kb on - strand, within ABZR87_RS05995at 1279.522 kb on - strand, within ABZR87_RS05995at 1279.522 kb on - strand, within ABZR87_RS05995at 1279.997 kb on + strand, within ABZR87_RS06000at 1279.998 kb on - strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.695 kb on + strand, within ABZR87_RS06005at 1280.695 kb on + strand, within ABZR87_RS06005at 1280.696 kb on - strand, within ABZR87_RS06005at 1280.696 kb on - strand, within ABZR87_RS06005at 1281.052 kb on + strand, within ABZR87_RS06005at 1281.052 kb on + strand, within ABZR87_RS06005at 1281.052 kb on + strand, within ABZR87_RS06005at 1281.053 kb on - strand, within ABZR87_RS06005at 1281.053 kb on - strand, within ABZR87_RS06005at 1281.053 kb on - strand, within ABZR87_RS06005at 1281.053 kb on - strand, within ABZR87_RS06005at 1281.053 kb on - strand, within ABZR87_RS06005at 1281.058 kb on + strand, within ABZR87_RS06005at 1281.058 kb on + strand, within ABZR87_RS06005at 1281.059 kb on - strand, within ABZR87_RS06005at 1281.059 kb on - strand, within ABZR87_RS06005at 1281.059 kb on - strand, within ABZR87_RS06005at 1281.059 kb on - strand, within ABZR87_RS06005at 1281.059 kb on - strand, within ABZR87_RS06005at 1281.059 kb on - strand, within ABZR87_RS06005at 1281.059 kb on - strand, within ABZR87_RS06005at 1281.065 kb on + strand, within ABZR87_RS06005at 1281.066 kb on - strand, within ABZR87_RS06005at 1281.066 kb on - strand, within ABZR87_RS06005at 1281.066 kb on - strand, within ABZR87_RS06005at 1281.066 kb on - strand, within ABZR87_RS06005at 1281.066 kb on - strand, within ABZR87_RS06005at 1281.066 kb on - strand, within ABZR87_RS06005at 1281.562 kb on + strand, within ABZR87_RS06005at 1281.562 kb on + strand, within ABZR87_RS06005at 1281.562 kb on + strand, within ABZR87_RS06005at 1281.562 kb on + strand, within ABZR87_RS06005at 1281.562 kb on + strand, within ABZR87_RS06005at 1281.562 kb on + strand, within ABZR87_RS06005at 1281.562 kb on + strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.563 kb on - strand, within ABZR87_RS06005at 1281.582 kb on - strand, within ABZR87_RS06005at 1281.875 kb on + strand, within ABZR87_RS06010at 1281.876 kb on - strand, within ABZR87_RS06010at 1281.876 kb on - strand, within ABZR87_RS06010at 1281.981 kb on + strand, within ABZR87_RS06010at 1281.983 kb on + strand, within ABZR87_RS06010at 1281.983 kb on + strand, within ABZR87_RS06010at 1281.984 kb on - strand, within ABZR87_RS06010at 1282.008 kb on - strand, within ABZR87_RS06010at 1282.008 kb on - strand, within ABZR87_RS06010at 1282.025 kb on + strand, within ABZR87_RS06010at 1282.025 kb on + strand, within ABZR87_RS06010at 1282.025 kb on + strand, within ABZR87_RS06010at 1282.025 kb on + strand, within ABZR87_RS06010at 1282.025 kb on + strand, within ABZR87_RS06010at 1282.025 kb on + strand, within ABZR87_RS06010at 1282.025 kb on + strand, within ABZR87_RS06010at 1282.025 kb on + strand, within ABZR87_RS06010at 1282.026 kb on - strand, within ABZR87_RS06010at 1282.026 kb on - strand, within ABZR87_RS06010at 1282.026 kb on - strand, within ABZR87_RS06010at 1282.026 kb on - strand, within ABZR87_RS06010at 1282.039 kb on + strand, within ABZR87_RS06010at 1282.061 kb on + strand, within ABZR87_RS06010at 1282.062 kb on - strand, within ABZR87_RS06010at 1282.121 kb on + strand, within ABZR87_RS06010at 1282.121 kb on + strand, within ABZR87_RS06010at 1282.121 kb on + strand, within ABZR87_RS06010at 1282.121 kb on + strand, within ABZR87_RS06010at 1282.121 kb on + strand, within ABZR87_RS06010at 1282.121 kb on + strand, within ABZR87_RS06010at 1282.122 kb on - strand, within ABZR87_RS06010at 1282.122 kb on - strand, within ABZR87_RS06010at 1282.122 kb on - strand, within ABZR87_RS06010at 1282.122 kb on - strand, within ABZR87_RS06010at 1282.122 kb on - strand, within ABZR87_RS06010at 1282.122 kb on - strand, within ABZR87_RS06010at 1282.122 kb on - strand, within ABZR87_RS06010at 1282.122 kb on - strand, within ABZR87_RS06010at 1282.192 kb on + strand, within ABZR87_RS06010at 1282.192 kb on + strand, within ABZR87_RS06010at 1282.192 kb on + strand, within ABZR87_RS06010at 1282.192 kb on + strand, within ABZR87_RS06010at 1282.193 kb on - strand, within ABZR87_RS06010at 1282.193 kb on - strand, within ABZR87_RS06010at 1282.193 kb on - strand, within ABZR87_RS06010at 1282.193 kb on - strand, within ABZR87_RS06010at 1282.193 kb on - strand, within ABZR87_RS06010at 1282.193 kb on - strand, within ABZR87_RS06010at 1282.250 kb on + strand, within ABZR87_RS06010at 1282.251 kb on - strand, within ABZR87_RS06010at 1282.251 kb on - strand, within ABZR87_RS06010at 1282.251 kb on - strand, within ABZR87_RS06010at 1282.466 kb on + strandat 1282.467 kb on - strandat 1282.467 kb on - strandat 1282.469 kb on + strandat 1282.469 kb on + strandat 1282.469 kb on + strandat 1282.469 kb on + strandat 1282.469 kb on + strandat 1282.470 kb on - strandat 1282.470 kb on - strandat 1282.470 kb on - strandat 1282.470 kb on - strandat 1282.521 kb on + strandat 1282.521 kb on + strandat 1282.521 kb on + strandat 1282.521 kb on + strandat 1282.521 kb on + strandat 1282.521 kb on + strandat 1282.521 kb on + strandat 1282.521 kb on + strandat 1282.521 kb on + strandat 1282.522 kb on - strandat 1282.522 kb on - strandat 1282.522 kb on - strandat 1282.543 kb on + strandat 1282.544 kb on - strandat 1282.626 kb on + strandat 1282.626 kb on + strandat 1282.626 kb on + strandat 1282.676 kb on + strandat 1282.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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1,279,521 + ABZR87_RS05995 0.15 -0.5
1,279,521 + ABZR87_RS05995 0.15 +1.5
1,279,521 + ABZR87_RS05995 0.15 -2.7
1,279,521 + ABZR87_RS05995 0.15 -1.3
1,279,521 + ABZR87_RS05995 0.15 -0.6
1,279,522 - ABZR87_RS05995 0.15 +0.5
1,279,522 - ABZR87_RS05995 0.15 -0.9
1,279,522 - ABZR87_RS05995 0.15 -0.2
1,279,997 + ABZR87_RS06000 0.46 +0.5
1,279,998 - ABZR87_RS06000 0.46 +1.6
1,280,042 + ABZR87_RS06000 0.62 +0.6
1,280,042 + ABZR87_RS06000 0.62 -0.7
1,280,042 + ABZR87_RS06000 0.62 -0.4
1,280,042 + ABZR87_RS06000 0.62 +0.1
1,280,042 + ABZR87_RS06000 0.62 +0.0
1,280,042 + ABZR87_RS06000 0.62 -0.5
1,280,042 + ABZR87_RS06000 0.62 -1.3
1,280,042 + ABZR87_RS06000 0.62 +0.2
1,280,042 + ABZR87_RS06000 0.62 +1.7
1,280,042 + ABZR87_RS06000 0.62 +0.8
1,280,042 + ABZR87_RS06000 0.62 -1.0
1,280,042 + ABZR87_RS06000 0.62 +4.3
1,280,042 + ABZR87_RS06000 0.62 -0.2
1,280,042 + ABZR87_RS06000 0.62 +0.6
1,280,042 + ABZR87_RS06000 0.62 -1.9
1,280,043 - ABZR87_RS06000 0.62 +0.1
1,280,043 - ABZR87_RS06000 0.62 +1.0
1,280,043 - ABZR87_RS06000 0.62 +0.7
1,280,043 - ABZR87_RS06000 0.62 -0.9
1,280,043 - ABZR87_RS06000 0.62 -2.4
1,280,043 - ABZR87_RS06000 0.62 -0.6
1,280,043 - ABZR87_RS06000 0.62 -0.7
1,280,043 - ABZR87_RS06000 0.62 +0.8
1,280,043 - ABZR87_RS06000 0.62 -0.7
1,280,043 - ABZR87_RS06000 0.62 -1.8
1,280,043 - ABZR87_RS06000 0.62 -0.7
1,280,044 + ABZR87_RS06000 0.63 -0.7
1,280,044 + ABZR87_RS06000 0.63 -1.3
1,280,044 + ABZR87_RS06000 0.63 +0.8
1,280,044 + ABZR87_RS06000 0.63 -0.7
1,280,044 + ABZR87_RS06000 0.63 -1.7
1,280,044 + ABZR87_RS06000 0.63 +1.3
1,280,044 + ABZR87_RS06000 0.63 -2.4
1,280,044 + ABZR87_RS06000 0.63 +0.7
1,280,044 + ABZR87_RS06000 0.63 -0.1
1,280,044 + ABZR87_RS06000 0.63 +0.8
1,280,044 + ABZR87_RS06000 0.63 +0.7
1,280,044 + ABZR87_RS06000 0.63 -0.0
1,280,045 - ABZR87_RS06000 0.63 -1.0
1,280,045 - ABZR87_RS06000 0.63 +0.9
1,280,045 - ABZR87_RS06000 0.63 +1.1
1,280,045 - ABZR87_RS06000 0.63 -1.8
1,280,045 - ABZR87_RS06000 0.63 +0.8
1,280,045 - ABZR87_RS06000 0.63 -1.3
1,280,045 - ABZR87_RS06000 0.63 -1.0
1,280,045 - ABZR87_RS06000 0.63 +0.8
1,280,045 - ABZR87_RS06000 0.63 -0.6
1,280,695 + ABZR87_RS06005 0.15 -0.8
1,280,695 + ABZR87_RS06005 0.15 -1.1
1,280,696 - ABZR87_RS06005 0.15 -0.2
1,280,696 - ABZR87_RS06005 0.15 -1.1
1,281,052 + ABZR87_RS06005 0.45 +0.1
1,281,052 + ABZR87_RS06005 0.45 -2.2
1,281,052 + ABZR87_RS06005 0.45 +0.5
1,281,053 - ABZR87_RS06005 0.45 +0.4
1,281,053 - ABZR87_RS06005 0.45 -0.2
1,281,053 - ABZR87_RS06005 0.45 +1.1
1,281,053 - ABZR87_RS06005 0.45 +2.0
1,281,053 - ABZR87_RS06005 0.45 -0.7
1,281,058 + ABZR87_RS06005 0.45 +0.7
1,281,058 + ABZR87_RS06005 0.45 -0.2
1,281,059 - ABZR87_RS06005 0.45 -0.7
1,281,059 - ABZR87_RS06005 0.45 +0.2
1,281,059 - ABZR87_RS06005 0.45 +0.2
1,281,059 - ABZR87_RS06005 0.45 -2.0
1,281,059 - ABZR87_RS06005 0.45 +0.6
1,281,059 - ABZR87_RS06005 0.45 +0.7
1,281,059 - ABZR87_RS06005 0.45 -1.0
1,281,065 + ABZR87_RS06005 0.46 -0.0
1,281,066 - ABZR87_RS06005 0.46 +0.2
1,281,066 - ABZR87_RS06005 0.46 -1.6
1,281,066 - ABZR87_RS06005 0.46 +0.5
1,281,066 - ABZR87_RS06005 0.46 +0.9
1,281,066 - ABZR87_RS06005 0.46 -0.2
1,281,066 - ABZR87_RS06005 0.46 -1.2
1,281,562 + ABZR87_RS06005 0.87 +0.0
1,281,562 + ABZR87_RS06005 0.87 -1.0
1,281,562 + ABZR87_RS06005 0.87 -0.6
1,281,562 + ABZR87_RS06005 0.87 +1.2
1,281,562 + ABZR87_RS06005 0.87 -1.0
1,281,562 + ABZR87_RS06005 0.87 -0.3
1,281,562 + ABZR87_RS06005 0.87 -2.8
1,281,563 - ABZR87_RS06005 0.87 +2.0
1,281,563 - ABZR87_RS06005 0.87 +0.5
1,281,563 - ABZR87_RS06005 0.87 +1.7
1,281,563 - ABZR87_RS06005 0.87 -2.2
1,281,563 - ABZR87_RS06005 0.87 +0.4
1,281,563 - ABZR87_RS06005 0.87 +0.3
1,281,563 - ABZR87_RS06005 0.87 -0.5
1,281,563 - ABZR87_RS06005 0.87 -0.4
1,281,563 - ABZR87_RS06005 0.87 -0.4
1,281,563 - ABZR87_RS06005 0.87 -0.3
1,281,582 - ABZR87_RS06005 0.89 -1.3
1,281,875 + ABZR87_RS06010 0.14 -1.2
1,281,876 - ABZR87_RS06010 0.14 +1.4
1,281,876 - ABZR87_RS06010 0.14 -0.9
1,281,981 + ABZR87_RS06010 0.29 -0.1
1,281,983 + ABZR87_RS06010 0.29 +0.2
1,281,983 + ABZR87_RS06010 0.29 -0.7
1,281,984 - ABZR87_RS06010 0.30 -0.3
1,282,008 - ABZR87_RS06010 0.33 -0.3
1,282,008 - ABZR87_RS06010 0.33 -0.9
1,282,025 + ABZR87_RS06010 0.35 +1.3
1,282,025 + ABZR87_RS06010 0.35 -1.2
1,282,025 + ABZR87_RS06010 0.35 +0.6
1,282,025 + ABZR87_RS06010 0.35 -1.0
1,282,025 + ABZR87_RS06010 0.35 -0.5
1,282,025 + ABZR87_RS06010 0.35 +1.1
1,282,025 + ABZR87_RS06010 0.35 -1.9
1,282,025 + ABZR87_RS06010 0.35 -1.0
1,282,026 - ABZR87_RS06010 0.35 +0.5
1,282,026 - ABZR87_RS06010 0.35 -1.0
1,282,026 - ABZR87_RS06010 0.35 -1.2
1,282,026 - ABZR87_RS06010 0.35 -0.6
1,282,039 + ABZR87_RS06010 0.37 -0.0
1,282,061 + ABZR87_RS06010 0.40 +0.5
1,282,062 - ABZR87_RS06010 0.41 -0.8
1,282,121 + ABZR87_RS06010 0.49 -0.9
1,282,121 + ABZR87_RS06010 0.49 -0.6
1,282,121 + ABZR87_RS06010 0.49 -0.7
1,282,121 + ABZR87_RS06010 0.49 +0.2
1,282,121 + ABZR87_RS06010 0.49 -1.5
1,282,121 + ABZR87_RS06010 0.49 -1.0
1,282,122 - ABZR87_RS06010 0.49 -1.3
1,282,122 - ABZR87_RS06010 0.49 -1.6
1,282,122 - ABZR87_RS06010 0.49 +0.7
1,282,122 - ABZR87_RS06010 0.49 +0.4
1,282,122 - ABZR87_RS06010 0.49 +0.3
1,282,122 - ABZR87_RS06010 0.49 +1.1
1,282,122 - ABZR87_RS06010 0.49 -1.9
1,282,122 - ABZR87_RS06010 0.49 +1.0
1,282,192 + ABZR87_RS06010 0.59 +0.1
1,282,192 + ABZR87_RS06010 0.59 -1.2
1,282,192 + ABZR87_RS06010 0.59 +1.5
1,282,192 + ABZR87_RS06010 0.59 +0.3
1,282,193 - ABZR87_RS06010 0.59 -1.2
1,282,193 - ABZR87_RS06010 0.59 -1.9
1,282,193 - ABZR87_RS06010 0.59 +0.5
1,282,193 - ABZR87_RS06010 0.59 -1.0
1,282,193 - ABZR87_RS06010 0.59 +1.9
1,282,193 - ABZR87_RS06010 0.59 +1.0
1,282,250 + ABZR87_RS06010 0.67 -0.3
1,282,251 - ABZR87_RS06010 0.67 +0.0
1,282,251 - ABZR87_RS06010 0.67 +0.5
1,282,251 - ABZR87_RS06010 0.67 -0.2
1,282,466 + +0.7
1,282,467 - +0.0
1,282,467 - -0.6
1,282,469 + -0.2
1,282,469 + +1.5
1,282,469 + +0.1
1,282,469 + +1.7
1,282,469 + -1.5
1,282,470 - -2.4
1,282,470 - -0.1
1,282,470 - -0.2
1,282,470 - -0.1
1,282,521 + -1.9
1,282,521 + -1.4
1,282,521 + -0.1
1,282,521 + +0.3
1,282,521 + -0.4
1,282,521 + -0.3
1,282,521 + -1.1
1,282,521 + +0.1
1,282,521 + +0.2
1,282,522 - -0.7
1,282,522 - +0.7
1,282,522 - -1.2
1,282,543 + -1.0
1,282,544 - -0.8
1,282,626 + +1.5
1,282,626 + +0.6
1,282,626 + +0.7
1,282,676 + +0.4
1,282,676 + -0.9

Or see this region's nucleotide sequence