Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04525 and ABZR87_RS04530 are separated by 137 nucleotides ABZR87_RS04530 and ABZR87_RS04535 are separated by 942 nucleotides
ABZR87_RS04525: ABZR87_RS04525 - sensor histidine kinase KdpD, at 944,530 to 947,346
_RS04525
ABZR87_RS04530: ABZR87_RS04530 - MetQ/NlpA family lipoprotein, at 947,484 to 948,290
_RS04530
ABZR87_RS04535: ABZR87_RS04535 - EAL domain-containing protein, at 949,233 to 950,447
_RS04535
Position (kb) 947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.588 kb on + strand, within ABZR87_RS04525 at 946.589 kb on - strand, within ABZR87_RS04525 at 946.589 kb on - strand, within ABZR87_RS04525 at 947.370 kb on + strand at 947.370 kb on + strand at 947.371 kb on - strand at 947.371 kb on - strand at 947.371 kb on - strand at 947.371 kb on - strand at 947.371 kb on - strand at 947.398 kb on + strand at 947.399 kb on - strand at 947.410 kb on + strand at 947.411 kb on - strand at 947.677 kb on - strand, within ABZR87_RS04530 at 947.772 kb on + strand, within ABZR87_RS04530 at 947.772 kb on + strand, within ABZR87_RS04530 at 947.773 kb on - strand, within ABZR87_RS04530 at 947.773 kb on - strand, within ABZR87_RS04530 at 947.773 kb on - strand, within ABZR87_RS04530 at 947.773 kb on - strand, within ABZR87_RS04530 at 947.799 kb on + strand, within ABZR87_RS04530 at 947.799 kb on + strand, within ABZR87_RS04530 at 947.799 kb on + strand, within ABZR87_RS04530 at 947.799 kb on + strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.800 kb on - strand, within ABZR87_RS04530 at 947.820 kb on + strand, within ABZR87_RS04530 at 947.820 kb on + strand, within ABZR87_RS04530 at 947.821 kb on - strand, within ABZR87_RS04530 at 947.821 kb on - strand, within ABZR87_RS04530 at 948.087 kb on + strand, within ABZR87_RS04530 at 948.088 kb on - strand, within ABZR87_RS04530 at 948.154 kb on - strand, within ABZR87_RS04530 at 948.222 kb on + strand at 948.222 kb on + strand at 948.223 kb on - strand at 948.223 kb on - strand at 948.288 kb on + strand at 948.289 kb on - strand at 948.301 kb on + strand at 948.301 kb on + strand at 948.302 kb on - strand at 948.313 kb on + strand at 948.313 kb on + strand at 948.314 kb on - strand at 948.314 kb on - strand at 948.459 kb on - strand at 948.459 kb on - strand at 948.459 kb on - strand at 948.459 kb on - strand at 948.474 kb on + strand at 948.474 kb on + strand at 948.474 kb on + strand at 948.475 kb on - strand at 948.475 kb on - strand at 948.478 kb on + strand at 948.478 kb on + strand at 948.478 kb on + strand at 948.478 kb on + strand at 948.479 kb on - strand at 948.479 kb on - strand at 948.479 kb on - strand at 948.479 kb on - strand at 948.489 kb on + strand at 948.515 kb on - strand at 948.515 kb on - strand at 948.515 kb on - strand at 948.515 kb on - strand at 948.516 kb on + strand at 948.516 kb on + strand at 948.516 kb on + strand at 948.516 kb on + strand at 948.516 kb on + strand at 948.517 kb on - strand at 948.517 kb on - strand at 948.517 kb on - strand at 948.517 kb on - strand at 948.517 kb on - strand at 948.520 kb on - strand at 948.520 kb on - strand at 948.643 kb on + strand at 948.644 kb on - strand at 948.774 kb on - strand at 948.836 kb on + strand at 948.836 kb on + strand at 948.837 kb on - strand at 948.837 kb on - strand at 948.837 kb on - strand at 948.837 kb on - strand at 948.867 kb on + strand at 948.868 kb on - strand at 948.915 kb on + strand at 948.938 kb on + strand at 948.939 kb on - strand at 948.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 946,588 + ABZR87_RS04525 0.73 -2.0 946,588 + ABZR87_RS04525 0.73 -0.7 946,588 + ABZR87_RS04525 0.73 -0.6 946,588 + ABZR87_RS04525 0.73 -0.0 946,588 + ABZR87_RS04525 0.73 +0.4 946,589 - ABZR87_RS04525 0.73 -0.4 946,589 - ABZR87_RS04525 0.73 -0.5 947,370 + +0.3 947,370 + +1.4 947,371 - -1.1 947,371 - -1.0 947,371 - +0.4 947,371 - +1.0 947,371 - -0.0 947,398 + -0.8 947,399 - -1.2 947,410 + -2.4 947,411 - +2.2 947,677 - ABZR87_RS04530 0.24 -1.3 947,772 + ABZR87_RS04530 0.36 +3.6 947,772 + ABZR87_RS04530 0.36 -0.2 947,773 - ABZR87_RS04530 0.36 -0.1 947,773 - ABZR87_RS04530 0.36 -0.6 947,773 - ABZR87_RS04530 0.36 +0.6 947,773 - ABZR87_RS04530 0.36 +1.8 947,799 + ABZR87_RS04530 0.39 -0.9 947,799 + ABZR87_RS04530 0.39 -1.6 947,799 + ABZR87_RS04530 0.39 +1.9 947,799 + ABZR87_RS04530 0.39 +0.1 947,800 - ABZR87_RS04530 0.39 -1.1 947,800 - ABZR87_RS04530 0.39 +1.6 947,800 - ABZR87_RS04530 0.39 -0.4 947,800 - ABZR87_RS04530 0.39 -0.4 947,800 - ABZR87_RS04530 0.39 +0.8 947,800 - ABZR87_RS04530 0.39 +1.2 947,800 - ABZR87_RS04530 0.39 -0.0 947,800 - ABZR87_RS04530 0.39 +1.5 947,820 + ABZR87_RS04530 0.42 +0.7 947,820 + ABZR87_RS04530 0.42 +1.1 947,821 - ABZR87_RS04530 0.42 -1.6 947,821 - ABZR87_RS04530 0.42 -1.2 948,087 + ABZR87_RS04530 0.75 -1.2 948,088 - ABZR87_RS04530 0.75 +0.2 948,154 - ABZR87_RS04530 0.83 +0.1 948,222 + -1.1 948,222 + -1.9 948,223 - -3.1 948,223 - +0.4 948,288 + +1.5 948,289 - +0.5 948,301 + -0.3 948,301 + -0.2 948,302 - -0.9 948,313 + -0.8 948,313 + +3.5 948,314 - +0.6 948,314 - -1.6 948,459 - +0.1 948,459 - +1.0 948,459 - +0.2 948,459 - +1.0 948,474 + -0.1 948,474 + +0.4 948,474 + -0.3 948,475 - +1.6 948,475 - +0.3 948,478 + -0.4 948,478 + +1.0 948,478 + +0.3 948,478 + +1.1 948,479 - +0.8 948,479 - +0.9 948,479 - +1.2 948,479 - +1.4 948,489 + +0.4 948,515 - +0.8 948,515 - +1.6 948,515 - -0.6 948,515 - +0.8 948,516 + +0.8 948,516 + -2.1 948,516 + -1.0 948,516 + -0.4 948,516 + +0.2 948,517 - -0.3 948,517 - -1.5 948,517 - +0.4 948,517 - -0.7 948,517 - -0.3 948,520 - -1.2 948,520 - +0.1 948,643 + +0.6 948,644 - -0.2 948,774 - -1.7 948,836 + -0.4 948,836 + -0.1 948,837 - -1.0 948,837 - -0.5 948,837 - -2.0 948,837 - -0.3 948,867 + -0.3 948,868 - +0.4 948,915 + +0.4 948,938 + -0.8 948,939 - +0.3 948,939 - -3.0
Or see this region's nucleotide sequence