Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04435

Experiment: root sample 5; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS04430 and ABZR87_RS04435 are separated by 161 nucleotidesABZR87_RS04435 and ABZR87_RS04440 are separated by 399 nucleotidesABZR87_RS04440 and ABZR87_RS04445 overlap by 7 nucleotides ABZR87_RS04430: ABZR87_RS04430 - hypothetical protein, at 928,410 to 929,231 _RS04430 ABZR87_RS04435: ABZR87_RS04435 - lysozyme inhibitor LprI family protein, at 929,393 to 929,854 _RS04435 ABZR87_RS04440: ABZR87_RS04440 - metalloregulator ArsR/SmtB family transcription factor, at 930,254 to 930,574 _RS04440 ABZR87_RS04445: ABZR87_RS04445 - arsenate reductase ArsC, at 930,568 to 931,086 _RS04445 Position (kb) 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 928.444 kb on + strandat 928.444 kb on + strandat 928.444 kb on + strandat 928.444 kb on + strandat 928.444 kb on + strandat 928.444 kb on + strandat 928.444 kb on + strandat 928.445 kb on - strandat 928.445 kb on - strandat 928.445 kb on - strandat 928.445 kb on - strandat 928.459 kb on + strandat 928.460 kb on - strandat 928.471 kb on + strandat 928.471 kb on + strandat 928.471 kb on + strandat 928.471 kb on + strandat 928.472 kb on - strandat 928.573 kb on + strand, within ABZR87_RS04430at 928.643 kb on + strand, within ABZR87_RS04430at 928.644 kb on - strand, within ABZR87_RS04430at 928.717 kb on + strand, within ABZR87_RS04430at 928.718 kb on - strand, within ABZR87_RS04430at 928.718 kb on - strand, within ABZR87_RS04430at 928.779 kb on + strand, within ABZR87_RS04430at 928.779 kb on + strand, within ABZR87_RS04430at 928.780 kb on - strand, within ABZR87_RS04430at 928.780 kb on - strand, within ABZR87_RS04430at 928.780 kb on - strand, within ABZR87_RS04430at 928.791 kb on + strand, within ABZR87_RS04430at 928.813 kb on + strand, within ABZR87_RS04430at 928.813 kb on + strand, within ABZR87_RS04430at 928.813 kb on + strand, within ABZR87_RS04430at 928.813 kb on + strand, within ABZR87_RS04430at 928.813 kb on + strand, within ABZR87_RS04430at 928.813 kb on + strand, within ABZR87_RS04430at 928.813 kb on + strand, within ABZR87_RS04430at 928.813 kb on + strand, within ABZR87_RS04430at 928.814 kb on - strand, within ABZR87_RS04430at 928.814 kb on - strand, within ABZR87_RS04430at 928.814 kb on - strand, within ABZR87_RS04430at 928.814 kb on - strand, within ABZR87_RS04430at 928.814 kb on - strand, within ABZR87_RS04430at 928.814 kb on - strand, within ABZR87_RS04430at 928.814 kb on - strand, within ABZR87_RS04430at 928.944 kb on - strand, within ABZR87_RS04430at 929.015 kb on + strand, within ABZR87_RS04430at 929.016 kb on - strand, within ABZR87_RS04430at 929.016 kb on - strand, within ABZR87_RS04430at 929.081 kb on - strand, within ABZR87_RS04430at 929.081 kb on - strand, within ABZR87_RS04430at 929.214 kb on + strandat 929.214 kb on + strandat 929.214 kb on + strandat 929.214 kb on + strandat 929.215 kb on - strandat 929.294 kb on + strandat 929.350 kb on + strandat 929.351 kb on - strandat 929.351 kb on - strandat 929.351 kb on - strandat 929.351 kb on - strandat 929.351 kb on - strandat 929.387 kb on + strandat 929.387 kb on + strandat 929.387 kb on + strandat 929.387 kb on + strandat 929.387 kb on + strandat 929.388 kb on - strandat 929.388 kb on - strandat 929.404 kb on + strandat 929.404 kb on + strandat 929.405 kb on - strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.427 kb on + strandat 929.428 kb on - strandat 929.428 kb on - strandat 929.428 kb on - strandat 929.452 kb on + strand, within ABZR87_RS04435at 929.453 kb on - strand, within ABZR87_RS04435at 929.470 kb on + strand, within ABZR87_RS04435at 929.470 kb on + strand, within ABZR87_RS04435at 929.471 kb on - strand, within ABZR87_RS04435at 929.471 kb on - strand, within ABZR87_RS04435at 929.475 kb on + strand, within ABZR87_RS04435at 929.609 kb on + strand, within ABZR87_RS04435at 929.618 kb on + strand, within ABZR87_RS04435at 929.618 kb on + strand, within ABZR87_RS04435at 929.618 kb on + strand, within ABZR87_RS04435at 929.643 kb on - strand, within ABZR87_RS04435at 929.643 kb on - strand, within ABZR87_RS04435at 929.840 kb on + strandat 929.840 kb on + strandat 929.841 kb on - strandat 929.841 kb on - strandat 929.844 kb on - strandat 929.844 kb on - strandat 929.844 kb on - strandat 929.852 kb on + strandat 929.853 kb on - strandat 929.903 kb on + strandat 929.903 kb on + strandat 929.903 kb on + strandat 929.903 kb on + strandat 929.904 kb on - strandat 929.960 kb on + strandat 929.960 kb on + strandat 929.960 kb on + strandat 929.960 kb on + strandat 929.961 kb on - strandat 929.961 kb on - strandat 929.961 kb on - strandat 930.081 kb on + strandat 930.094 kb on + strandat 930.094 kb on + strandat 930.095 kb on - strandat 930.095 kb on - strandat 930.095 kb on - strandat 930.108 kb on + strandat 930.109 kb on - strandat 930.111 kb on + strandat 930.111 kb on + strandat 930.112 kb on - strandat 930.114 kb on + strandat 930.114 kb on + strandat 930.114 kb on + strandat 930.114 kb on + strandat 930.114 kb on + strandat 930.115 kb on - strandat 930.115 kb on - strandat 930.115 kb on - strandat 930.115 kb on - strandat 930.115 kb on - strandat 930.117 kb on + strandat 930.117 kb on + strandat 930.117 kb on + strandat 930.117 kb on + strandat 930.117 kb on + strandat 930.117 kb on + strandat 930.117 kb on + strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.118 kb on - strandat 930.125 kb on + strandat 930.125 kb on + strandat 930.125 kb on + strandat 930.125 kb on + strandat 930.126 kb on - strandat 930.126 kb on - strandat 930.126 kb on - strandat 930.126 kb on - strandat 930.129 kb on + strandat 930.129 kb on + strandat 930.129 kb on + strandat 930.129 kb on + strandat 930.130 kb on - strandat 930.130 kb on - strandat 930.130 kb on - strandat 930.130 kb on - strandat 930.137 kb on + strandat 930.137 kb on + strandat 930.138 kb on - strandat 930.143 kb on + strandat 930.143 kb on + strandat 930.143 kb on + strandat 930.143 kb on + strandat 930.144 kb on - strandat 930.144 kb on - strandat 930.146 kb on - strandat 930.233 kb on + strandat 930.233 kb on + strandat 930.234 kb on - strandat 930.242 kb on + strandat 930.242 kb on + strandat 930.242 kb on + strandat 930.243 kb on - strandat 930.243 kb on - strandat 930.243 kb on - strandat 930.243 kb on - strandat 930.253 kb on + strandat 930.253 kb on + strandat 930.253 kb on + strandat 930.253 kb on + strandat 930.253 kb on + strandat 930.254 kb on - strandat 930.465 kb on + strand, within ABZR87_RS04440at 930.465 kb on + strand, within ABZR87_RS04440at 930.465 kb on + strand, within ABZR87_RS04440at 930.465 kb on + strand, within ABZR87_RS04440at 930.465 kb on + strand, within ABZR87_RS04440at 930.466 kb on - strand, within ABZR87_RS04440at 930.466 kb on - strand, within ABZR87_RS04440at 930.466 kb on - strand, within ABZR87_RS04440at 930.466 kb on - strand, within ABZR87_RS04440at 930.466 kb on - strand, within ABZR87_RS04440at 930.466 kb on - strand, within ABZR87_RS04440at 930.483 kb on - strand, within ABZR87_RS04440at 930.483 kb on - strand, within ABZR87_RS04440at 930.684 kb on + strand, within ABZR87_RS04445at 930.685 kb on - strand, within ABZR87_RS04445at 930.685 kb on - strand, within ABZR87_RS04445at 930.700 kb on + strand, within ABZR87_RS04445at 930.701 kb on - strand, within ABZR87_RS04445at 930.701 kb on - strand, within ABZR87_RS04445at 930.792 kb on + strand, within ABZR87_RS04445at 930.792 kb on + strand, within ABZR87_RS04445at 930.793 kb on - strand, within ABZR87_RS04445at 930.793 kb on - strand, within ABZR87_RS04445at 930.793 kb on - strand, within ABZR87_RS04445at 930.852 kb on - strand, within ABZR87_RS04445at 930.852 kb on - strand, within ABZR87_RS04445at 930.852 kb on - strand, within ABZR87_RS04445at 930.852 kb on - strand, within ABZR87_RS04445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
remove
928,444 + -0.0
928,444 + -2.3
928,444 + +1.0
928,444 + -0.4
928,444 + -1.8
928,444 + -1.0
928,444 + +1.0
928,445 - -0.3
928,445 - -1.8
928,445 - -1.0
928,445 - -0.2
928,459 + -0.4
928,460 - -3.4
928,471 + +0.7
928,471 + -0.6
928,471 + +0.6
928,471 + -1.2
928,472 - +0.6
928,573 + ABZR87_RS04430 0.20 -0.1
928,643 + ABZR87_RS04430 0.28 -0.8
928,644 - ABZR87_RS04430 0.28 -1.9
928,717 + ABZR87_RS04430 0.37 -2.2
928,718 - ABZR87_RS04430 0.37 -1.1
928,718 - ABZR87_RS04430 0.37 -0.2
928,779 + ABZR87_RS04430 0.45 +0.7
928,779 + ABZR87_RS04430 0.45 +3.9
928,780 - ABZR87_RS04430 0.45 -2.4
928,780 - ABZR87_RS04430 0.45 -0.1
928,780 - ABZR87_RS04430 0.45 +0.8
928,791 + ABZR87_RS04430 0.46 +0.0
928,813 + ABZR87_RS04430 0.49 +0.6
928,813 + ABZR87_RS04430 0.49 -0.9
928,813 + ABZR87_RS04430 0.49 +0.5
928,813 + ABZR87_RS04430 0.49 -1.8
928,813 + ABZR87_RS04430 0.49 -2.0
928,813 + ABZR87_RS04430 0.49 +1.4
928,813 + ABZR87_RS04430 0.49 -1.6
928,813 + ABZR87_RS04430 0.49 -0.1
928,814 - ABZR87_RS04430 0.49 -0.0
928,814 - ABZR87_RS04430 0.49 +1.2
928,814 - ABZR87_RS04430 0.49 -0.1
928,814 - ABZR87_RS04430 0.49 -0.3
928,814 - ABZR87_RS04430 0.49 -0.6
928,814 - ABZR87_RS04430 0.49 +0.3
928,814 - ABZR87_RS04430 0.49 -0.7
928,944 - ABZR87_RS04430 0.65 +0.2
929,015 + ABZR87_RS04430 0.74 -1.4
929,016 - ABZR87_RS04430 0.74 -0.5
929,016 - ABZR87_RS04430 0.74 +1.1
929,081 - ABZR87_RS04430 0.82 +0.6
929,081 - ABZR87_RS04430 0.82 +0.5
929,214 + -0.6
929,214 + +1.3
929,214 + +2.3
929,214 + +0.5
929,215 - +0.9
929,294 + +2.2
929,350 + -0.6
929,351 - -1.2
929,351 - +0.9
929,351 - +1.3
929,351 - -0.8
929,351 - +1.8
929,387 + -0.2
929,387 + -1.2
929,387 + -0.5
929,387 + -0.4
929,387 + +0.0
929,388 - -0.1
929,388 - -1.0
929,404 + -0.4
929,404 + +0.5
929,405 - -0.8
929,427 + -0.3
929,427 + -0.5
929,427 + +1.1
929,427 + -0.2
929,427 + -0.9
929,428 - +2.8
929,428 - +0.5
929,428 - +1.4
929,452 + ABZR87_RS04435 0.13 -2.1
929,453 - ABZR87_RS04435 0.13 -0.2
929,470 + ABZR87_RS04435 0.17 -0.8
929,470 + ABZR87_RS04435 0.17 -0.7
929,471 - ABZR87_RS04435 0.17 -1.0
929,471 - ABZR87_RS04435 0.17 +1.9
929,475 + ABZR87_RS04435 0.18 -0.4
929,609 + ABZR87_RS04435 0.47 -1.1
929,618 + ABZR87_RS04435 0.49 -1.2
929,618 + ABZR87_RS04435 0.49 -0.7
929,618 + ABZR87_RS04435 0.49 +0.1
929,643 - ABZR87_RS04435 0.54 -1.1
929,643 - ABZR87_RS04435 0.54 +0.0
929,840 + -0.1
929,840 + -1.9
929,841 - -0.6
929,841 - +2.2
929,844 - +1.3
929,844 - +0.5
929,844 - +0.9
929,852 + +0.1
929,853 - +0.8
929,903 + +0.5
929,903 + -1.1
929,903 + -1.6
929,903 + -0.5
929,904 - -0.5
929,960 + -1.9
929,960 + -1.4
929,960 + -0.3
929,960 + +0.2
929,961 - -0.2
929,961 - -0.4
929,961 - -0.2
930,081 + +0.7
930,094 + -2.6
930,094 + -0.6
930,095 - +0.8
930,095 - -1.1
930,095 - -1.4
930,108 + -0.9
930,109 - +1.4
930,111 + -1.8
930,111 + -0.8
930,112 - -2.4
930,114 + -0.7
930,114 + +0.4
930,114 + +1.0
930,114 + +0.7
930,114 + +0.1
930,115 - +2.3
930,115 - -1.9
930,115 - -0.4
930,115 - -0.8
930,115 - +0.6
930,117 + +1.8
930,117 + -1.2
930,117 + -1.1
930,117 + +0.5
930,117 + -0.9
930,117 + -0.2
930,117 + -0.9
930,118 - +0.7
930,118 - +0.1
930,118 - +0.9
930,118 - +0.9
930,118 - -0.3
930,118 - -1.6
930,118 - -0.4
930,118 - -0.2
930,118 - -2.1
930,118 - -0.1
930,125 + -1.2
930,125 + -0.8
930,125 + +0.2
930,125 + -0.4
930,126 - -1.4
930,126 - -1.2
930,126 - +0.3
930,126 - +2.3
930,129 + -0.8
930,129 + -0.5
930,129 + -1.7
930,129 + -1.4
930,130 - +0.3
930,130 - -0.7
930,130 - -0.4
930,130 - +0.1
930,137 + +0.3
930,137 + +0.9
930,138 - -0.9
930,143 + +2.3
930,143 + -1.2
930,143 + -0.7
930,143 + -0.2
930,144 - +1.7
930,144 - +0.0
930,146 - +0.6
930,233 + -0.4
930,233 + -0.6
930,234 - -1.1
930,242 + -2.4
930,242 + +0.1
930,242 + +2.6
930,243 - +0.7
930,243 - +0.8
930,243 - +0.2
930,243 - -2.4
930,253 + -0.5
930,253 + +0.0
930,253 + -1.5
930,253 + +0.4
930,253 + +2.1
930,254 - -2.5
930,465 + ABZR87_RS04440 0.66 +1.0
930,465 + ABZR87_RS04440 0.66 -0.7
930,465 + ABZR87_RS04440 0.66 +1.4
930,465 + ABZR87_RS04440 0.66 +0.3
930,465 + ABZR87_RS04440 0.66 +0.3
930,466 - ABZR87_RS04440 0.66 -0.6
930,466 - ABZR87_RS04440 0.66 +0.6
930,466 - ABZR87_RS04440 0.66 +0.1
930,466 - ABZR87_RS04440 0.66 -1.4
930,466 - ABZR87_RS04440 0.66 -1.6
930,466 - ABZR87_RS04440 0.66 -2.2
930,483 - ABZR87_RS04440 0.71 -1.2
930,483 - ABZR87_RS04440 0.71 -2.1
930,684 + ABZR87_RS04445 0.22 +0.6
930,685 - ABZR87_RS04445 0.23 -1.0
930,685 - ABZR87_RS04445 0.23 +0.7
930,700 + ABZR87_RS04445 0.25 -0.8
930,701 - ABZR87_RS04445 0.26 -0.7
930,701 - ABZR87_RS04445 0.26 -0.5
930,792 + ABZR87_RS04445 0.43 -1.4
930,792 + ABZR87_RS04445 0.43 +1.1
930,793 - ABZR87_RS04445 0.43 +0.3
930,793 - ABZR87_RS04445 0.43 -1.7
930,793 - ABZR87_RS04445 0.43 -1.0
930,852 - ABZR87_RS04445 0.55 -0.8
930,852 - ABZR87_RS04445 0.55 -0.5
930,852 - ABZR87_RS04445 0.55 -0.4
930,852 - ABZR87_RS04445 0.55 +0.7

Or see this region's nucleotide sequence