Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03945 and ABZR87_RS03950 are separated by 14 nucleotides ABZR87_RS03950 and ABZR87_RS03955 are separated by 21 nucleotides ABZR87_RS03955 and ABZR87_RS03960 are separated by 9 nucleotides
ABZR87_RS03945: ABZR87_RS03945 - oligopeptide transporter, OPT family, at 821,544 to 823,598
_RS03945
ABZR87_RS03950: ABZR87_RS03950 - GNAT family N-acetyltransferase, at 823,613 to 824,128
_RS03950
ABZR87_RS03955: ABZR87_RS03955 - YbdK family carboxylate-amine ligase, at 824,150 to 825,283
_RS03955
ABZR87_RS03960: ABZR87_RS03960 - cation:proton antiporter, at 825,293 to 826,516
_RS03960
Position (kb) 824
825
826 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 823.254 kb on + strand, within ABZR87_RS03945 at 823.254 kb on + strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.352 kb on - strand, within ABZR87_RS03945 at 823.356 kb on + strand, within ABZR87_RS03945 at 823.357 kb on - strand, within ABZR87_RS03945 at 823.357 kb on - strand, within ABZR87_RS03945 at 823.357 kb on - strand, within ABZR87_RS03945 at 823.357 kb on - strand, within ABZR87_RS03945 at 823.366 kb on - strand, within ABZR87_RS03945 at 823.366 kb on - strand, within ABZR87_RS03945 at 823.438 kb on + strand at 823.439 kb on - strand at 823.439 kb on - strand at 823.439 kb on - strand at 823.439 kb on - strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.550 kb on - strand at 823.550 kb on - strand at 823.550 kb on - strand at 823.664 kb on + strand at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.698 kb on - strand, within ABZR87_RS03950 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.445 kb on + strand, within ABZR87_RS03955 at 824.446 kb on - strand, within ABZR87_RS03955 at 824.454 kb on + strand, within ABZR87_RS03955 at 824.454 kb on + strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.515 kb on + strand, within ABZR87_RS03955 at 824.515 kb on + strand, within ABZR87_RS03955 at 824.516 kb on - strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.613 kb on + strand, within ABZR87_RS03955 at 824.614 kb on - strand, within ABZR87_RS03955 at 824.614 kb on - strand, within ABZR87_RS03955 at 824.664 kb on + strand, within ABZR87_RS03955 at 824.664 kb on + strand, within ABZR87_RS03955 at 824.664 kb on + strand, within ABZR87_RS03955 at 824.811 kb on - strand, within ABZR87_RS03955 at 824.814 kb on + strand, within ABZR87_RS03955 at 824.814 kb on + strand, within ABZR87_RS03955 at 824.815 kb on - strand, within ABZR87_RS03955 at 824.838 kb on + strand, within ABZR87_RS03955 at 824.838 kb on + strand, within ABZR87_RS03955 at 824.839 kb on - strand, within ABZR87_RS03955 at 824.839 kb on - strand, within ABZR87_RS03955 at 824.839 kb on - strand, within ABZR87_RS03955 at 824.910 kb on + strand, within ABZR87_RS03955 at 824.917 kb on - strand, within ABZR87_RS03955 at 824.917 kb on - strand, within ABZR87_RS03955 at 824.917 kb on - strand, within ABZR87_RS03955 at 824.917 kb on - strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.931 kb on + strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.932 kb on - strand, within ABZR87_RS03955 at 824.938 kb on - strand, within ABZR87_RS03955 at 825.147 kb on + strand, within ABZR87_RS03955 at 825.148 kb on - strand, within ABZR87_RS03955 at 825.148 kb on - strand, within ABZR87_RS03955 at 825.148 kb on - strand, within ABZR87_RS03955 at 825.201 kb on + strand at 825.201 kb on + strand at 825.201 kb on + strand at 825.202 kb on - strand at 825.202 kb on - strand at 825.202 kb on - strand at 825.294 kb on + strand at 825.294 kb on + strand at 825.294 kb on + strand at 825.294 kb on + strand at 825.294 kb on + strand at 825.295 kb on - strand at 825.295 kb on - strand at 825.426 kb on + strand, within ABZR87_RS03960 at 825.426 kb on + strand, within ABZR87_RS03960 at 825.439 kb on + strand, within ABZR87_RS03960 at 825.825 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.852 kb on + strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.853 kb on - strand, within ABZR87_RS03960 at 825.912 kb on + strand, within ABZR87_RS03960 at 825.913 kb on - strand, within ABZR87_RS03960 at 825.949 kb on - strand, within ABZR87_RS03960 at 825.955 kb on + strand, within ABZR87_RS03960 at 825.955 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.996 kb on + strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960 at 825.997 kb on - strand, within ABZR87_RS03960
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 823,254 + ABZR87_RS03945 0.83 +0.7 823,254 + ABZR87_RS03945 0.83 -0.3 823,255 - ABZR87_RS03945 0.83 +0.9 823,255 - ABZR87_RS03945 0.83 +1.8 823,255 - ABZR87_RS03945 0.83 +0.8 823,255 - ABZR87_RS03945 0.83 -2.4 823,255 - ABZR87_RS03945 0.83 +0.8 823,255 - ABZR87_RS03945 0.83 -1.3 823,255 - ABZR87_RS03945 0.83 -2.0 823,255 - ABZR87_RS03945 0.83 +0.8 823,255 - ABZR87_RS03945 0.83 -0.4 823,352 - ABZR87_RS03945 0.88 +2.1 823,356 + ABZR87_RS03945 0.88 +0.8 823,357 - ABZR87_RS03945 0.88 -0.6 823,357 - ABZR87_RS03945 0.88 +0.9 823,357 - ABZR87_RS03945 0.88 -0.9 823,357 - ABZR87_RS03945 0.88 +1.3 823,366 - ABZR87_RS03945 0.89 -0.1 823,366 - ABZR87_RS03945 0.89 -0.0 823,438 + -1.0 823,439 - -1.0 823,439 - +1.6 823,439 - -0.5 823,439 - -0.7 823,549 + +2.8 823,549 + -0.4 823,549 + +0.0 823,549 + -1.8 823,549 + +1.1 823,549 + +2.8 823,549 + +1.1 823,549 + -0.5 823,549 + -1.2 823,549 + +1.4 823,550 - -0.2 823,550 - +2.2 823,550 - -0.8 823,664 + +1.8 823,665 - ABZR87_RS03950 0.10 +0.0 823,665 - ABZR87_RS03950 0.10 -1.6 823,665 - ABZR87_RS03950 0.10 -0.2 823,665 - ABZR87_RS03950 0.10 -0.3 823,665 - ABZR87_RS03950 0.10 -0.9 823,665 - ABZR87_RS03950 0.10 -0.6 823,698 - ABZR87_RS03950 0.16 -0.8 824,397 + ABZR87_RS03955 0.22 -0.0 824,397 + ABZR87_RS03955 0.22 -0.8 824,397 + ABZR87_RS03955 0.22 +0.6 824,398 - ABZR87_RS03955 0.22 -1.8 824,398 - ABZR87_RS03955 0.22 +0.6 824,398 - ABZR87_RS03955 0.22 -1.7 824,398 - ABZR87_RS03955 0.22 -1.9 824,445 + ABZR87_RS03955 0.26 +0.1 824,446 - ABZR87_RS03955 0.26 -0.8 824,454 + ABZR87_RS03955 0.27 -1.9 824,454 + ABZR87_RS03955 0.27 +0.8 824,455 - ABZR87_RS03955 0.27 +0.4 824,455 - ABZR87_RS03955 0.27 -0.2 824,455 - ABZR87_RS03955 0.27 -1.1 824,455 - ABZR87_RS03955 0.27 +0.1 824,515 + ABZR87_RS03955 0.32 +0.6 824,515 + ABZR87_RS03955 0.32 -0.6 824,516 - ABZR87_RS03955 0.32 +0.5 824,517 + ABZR87_RS03955 0.32 +0.7 824,517 + ABZR87_RS03955 0.32 +0.9 824,517 + ABZR87_RS03955 0.32 -0.9 824,517 + ABZR87_RS03955 0.32 -0.3 824,517 + ABZR87_RS03955 0.32 +1.9 824,517 + ABZR87_RS03955 0.32 -0.9 824,517 + ABZR87_RS03955 0.32 -1.4 824,518 - ABZR87_RS03955 0.32 +0.1 824,518 - ABZR87_RS03955 0.32 -0.4 824,518 - ABZR87_RS03955 0.32 +0.5 824,613 + ABZR87_RS03955 0.41 -0.9 824,613 + ABZR87_RS03955 0.41 +0.5 824,613 + ABZR87_RS03955 0.41 +0.4 824,613 + ABZR87_RS03955 0.41 -0.8 824,613 + ABZR87_RS03955 0.41 -1.4 824,614 - ABZR87_RS03955 0.41 +0.0 824,614 - ABZR87_RS03955 0.41 -0.7 824,664 + ABZR87_RS03955 0.45 -0.2 824,664 + ABZR87_RS03955 0.45 +0.8 824,664 + ABZR87_RS03955 0.45 -1.9 824,811 - ABZR87_RS03955 0.58 +0.7 824,814 + ABZR87_RS03955 0.59 -2.2 824,814 + ABZR87_RS03955 0.59 +1.1 824,815 - ABZR87_RS03955 0.59 -2.4 824,838 + ABZR87_RS03955 0.61 +1.7 824,838 + ABZR87_RS03955 0.61 +0.0 824,839 - ABZR87_RS03955 0.61 +2.3 824,839 - ABZR87_RS03955 0.61 +0.3 824,839 - ABZR87_RS03955 0.61 +0.2 824,910 + ABZR87_RS03955 0.67 +0.2 824,917 - ABZR87_RS03955 0.68 -1.4 824,917 - ABZR87_RS03955 0.68 -1.1 824,917 - ABZR87_RS03955 0.68 +1.4 824,917 - ABZR87_RS03955 0.68 -1.0 824,931 + ABZR87_RS03955 0.69 +0.9 824,931 + ABZR87_RS03955 0.69 -2.4 824,931 + ABZR87_RS03955 0.69 -0.9 824,931 + ABZR87_RS03955 0.69 -0.3 824,931 + ABZR87_RS03955 0.69 -0.7 824,932 - ABZR87_RS03955 0.69 -0.7 824,932 - ABZR87_RS03955 0.69 -1.2 824,932 - ABZR87_RS03955 0.69 +2.0 824,932 - ABZR87_RS03955 0.69 +0.6 824,932 - ABZR87_RS03955 0.69 -0.1 824,932 - ABZR87_RS03955 0.69 -0.6 824,932 - ABZR87_RS03955 0.69 -1.3 824,938 - ABZR87_RS03955 0.69 -2.2 825,147 + ABZR87_RS03955 0.88 -0.4 825,148 - ABZR87_RS03955 0.88 -1.2 825,148 - ABZR87_RS03955 0.88 +2.9 825,148 - ABZR87_RS03955 0.88 +0.2 825,201 + -0.3 825,201 + -0.2 825,201 + +0.2 825,202 - +1.1 825,202 - +0.9 825,202 - -1.0 825,294 + -1.2 825,294 + +0.6 825,294 + +0.0 825,294 + -1.3 825,294 + +0.8 825,295 - +0.3 825,295 - +0.0 825,426 + ABZR87_RS03960 0.11 +1.3 825,426 + ABZR87_RS03960 0.11 +2.0 825,439 + ABZR87_RS03960 0.12 -1.1 825,825 + ABZR87_RS03960 0.43 -1.3 825,852 + ABZR87_RS03960 0.46 +0.4 825,852 + ABZR87_RS03960 0.46 +2.6 825,852 + ABZR87_RS03960 0.46 +0.8 825,852 + ABZR87_RS03960 0.46 +1.5 825,853 - ABZR87_RS03960 0.46 +1.0 825,853 - ABZR87_RS03960 0.46 -0.4 825,853 - ABZR87_RS03960 0.46 +1.1 825,853 - ABZR87_RS03960 0.46 -0.4 825,853 - ABZR87_RS03960 0.46 +0.4 825,912 + ABZR87_RS03960 0.51 +1.0 825,913 - ABZR87_RS03960 0.51 -1.9 825,949 - ABZR87_RS03960 0.54 -0.1 825,955 + ABZR87_RS03960 0.54 -1.1 825,955 + ABZR87_RS03960 0.54 +0.5 825,996 + ABZR87_RS03960 0.57 -0.4 825,996 + ABZR87_RS03960 0.57 +0.8 825,996 + ABZR87_RS03960 0.57 -0.7 825,996 + ABZR87_RS03960 0.57 -1.0 825,996 + ABZR87_RS03960 0.57 +1.1 825,996 + ABZR87_RS03960 0.57 +0.7 825,996 + ABZR87_RS03960 0.57 +0.2 825,997 - ABZR87_RS03960 0.58 -0.0 825,997 - ABZR87_RS03960 0.58 +1.7 825,997 - ABZR87_RS03960 0.58 -0.6
Or see this region's nucleotide sequence