Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03860 and ABZR87_RS03865 are separated by 37 nucleotides ABZR87_RS03865 and ABZR87_RS03870 are separated by 7 nucleotides ABZR87_RS03870 and ABZR87_RS03875 are separated by 3 nucleotides
ABZR87_RS03860: ABZR87_RS03860 - C4-dicarboxylate transporter DctA, at 796,950 to 798,290
_RS03860
ABZR87_RS03865: ABZR87_RS03865 - GntR family transcriptional regulator, at 798,328 to 799,023
_RS03865
ABZR87_RS03870: ABZR87_RS03870 - YigZ family protein, at 799,031 to 799,615
_RS03870
ABZR87_RS03875: ABZR87_RS03875 - hypothetical protein, at 799,619 to 800,044
_RS03875
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 797.372 kb on + strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.586 kb on + strand, within ABZR87_RS03860 at 797.587 kb on - strand, within ABZR87_RS03860 at 797.634 kb on + strand, within ABZR87_RS03860 at 797.634 kb on + strand, within ABZR87_RS03860 at 797.634 kb on + strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.877 kb on + strand, within ABZR87_RS03860 at 797.878 kb on - strand, within ABZR87_RS03860 at 798.272 kb on + strand at 798.272 kb on + strand at 798.272 kb on + strand at 798.272 kb on + strand at 798.272 kb on + strand at 798.273 kb on - strand at 798.273 kb on - strand at 798.273 kb on - strand at 798.451 kb on + strand, within ABZR87_RS03865 at 798.451 kb on + strand, within ABZR87_RS03865 at 798.451 kb on + strand, within ABZR87_RS03865 at 798.451 kb on + strand, within ABZR87_RS03865 at 798.452 kb on - strand, within ABZR87_RS03865 at 798.452 kb on - strand, within ABZR87_RS03865 at 798.452 kb on - strand, within ABZR87_RS03865 at 798.646 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.847 kb on + strand, within ABZR87_RS03865 at 798.847 kb on + strand, within ABZR87_RS03865 at 798.847 kb on + strand, within ABZR87_RS03865 at 798.847 kb on + strand, within ABZR87_RS03865 at 798.848 kb on - strand, within ABZR87_RS03865 at 798.848 kb on - strand, within ABZR87_RS03865 at 799.004 kb on + strand at 799.004 kb on + strand at 799.005 kb on - strand at 799.005 kb on - strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.041 kb on - strand at 799.041 kb on - strand at 799.041 kb on - strand at 799.041 kb on - strand at 799.041 kb on - strand at 799.042 kb on + strand at 799.043 kb on - strand at 799.043 kb on - strand at 799.043 kb on - strand at 799.094 kb on - strand, within ABZR87_RS03870 at 799.316 kb on + strand, within ABZR87_RS03870 at 799.316 kb on + strand, within ABZR87_RS03870 at 799.361 kb on + strand, within ABZR87_RS03870 at 799.361 kb on + strand, within ABZR87_RS03870 at 799.362 kb on - strand, within ABZR87_RS03870 at 799.362 kb on - strand, within ABZR87_RS03870 at 799.429 kb on + strand, within ABZR87_RS03870 at 799.429 kb on + strand, within ABZR87_RS03870 at 799.430 kb on - strand, within ABZR87_RS03870 at 799.490 kb on + strand, within ABZR87_RS03870 at 799.491 kb on - strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.513 kb on - strand, within ABZR87_RS03870 at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.613 kb on + strand at 799.613 kb on + strand at 799.614 kb on - strand at 799.620 kb on + strand at 799.620 kb on + strand at 799.698 kb on + strand, within ABZR87_RS03875 at 799.698 kb on + strand, within ABZR87_RS03875 at 799.699 kb on - strand, within ABZR87_RS03875 at 799.699 kb on - strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.890 kb on + strand, within ABZR87_RS03875 at 799.890 kb on + strand, within ABZR87_RS03875 at 799.891 kb on - strand, within ABZR87_RS03875
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 797,372 + ABZR87_RS03860 0.31 +0.4 797,373 - ABZR87_RS03860 0.32 +0.8 797,373 - ABZR87_RS03860 0.32 +0.4 797,373 - ABZR87_RS03860 0.32 -1.4 797,586 + ABZR87_RS03860 0.47 -0.7 797,587 - ABZR87_RS03860 0.48 -1.9 797,634 + ABZR87_RS03860 0.51 -1.1 797,634 + ABZR87_RS03860 0.51 -0.6 797,634 + ABZR87_RS03860 0.51 +0.6 797,635 - ABZR87_RS03860 0.51 -0.6 797,635 - ABZR87_RS03860 0.51 -1.6 797,635 - ABZR87_RS03860 0.51 -0.8 797,635 - ABZR87_RS03860 0.51 -2.4 797,635 - ABZR87_RS03860 0.51 -0.2 797,635 - ABZR87_RS03860 0.51 -0.9 797,635 - ABZR87_RS03860 0.51 -0.3 797,635 - ABZR87_RS03860 0.51 -1.4 797,877 + ABZR87_RS03860 0.69 +0.5 797,878 - ABZR87_RS03860 0.69 +1.4 798,272 + -0.3 798,272 + -1.2 798,272 + +0.4 798,272 + +0.3 798,272 + -0.2 798,273 - +0.5 798,273 - -0.8 798,273 - -1.5 798,451 + ABZR87_RS03865 0.18 +0.8 798,451 + ABZR87_RS03865 0.18 +0.2 798,451 + ABZR87_RS03865 0.18 -0.0 798,451 + ABZR87_RS03865 0.18 -1.5 798,452 - ABZR87_RS03865 0.18 +1.2 798,452 - ABZR87_RS03865 0.18 -1.6 798,452 - ABZR87_RS03865 0.18 -2.2 798,646 + ABZR87_RS03865 0.46 +0.9 798,796 + ABZR87_RS03865 0.67 -2.2 798,796 + ABZR87_RS03865 0.67 +0.4 798,796 + ABZR87_RS03865 0.67 +0.7 798,796 + ABZR87_RS03865 0.67 -1.0 798,796 + ABZR87_RS03865 0.67 -0.6 798,797 - ABZR87_RS03865 0.67 -2.2 798,797 - ABZR87_RS03865 0.67 -2.2 798,797 - ABZR87_RS03865 0.67 -3.0 798,797 - ABZR87_RS03865 0.67 -0.0 798,797 - ABZR87_RS03865 0.67 -1.1 798,835 + ABZR87_RS03865 0.73 +0.4 798,835 + ABZR87_RS03865 0.73 -0.2 798,835 + ABZR87_RS03865 0.73 -2.6 798,835 + ABZR87_RS03865 0.73 -1.1 798,835 + ABZR87_RS03865 0.73 -3.0 798,835 + ABZR87_RS03865 0.73 -0.5 798,836 - ABZR87_RS03865 0.73 -2.4 798,836 - ABZR87_RS03865 0.73 -1.7 798,836 - ABZR87_RS03865 0.73 -3.0 798,836 - ABZR87_RS03865 0.73 -1.5 798,836 - ABZR87_RS03865 0.73 -2.9 798,836 - ABZR87_RS03865 0.73 -0.5 798,836 - ABZR87_RS03865 0.73 -1.8 798,847 + ABZR87_RS03865 0.75 -2.4 798,847 + ABZR87_RS03865 0.75 -1.1 798,847 + ABZR87_RS03865 0.75 +0.7 798,847 + ABZR87_RS03865 0.75 -2.8 798,848 - ABZR87_RS03865 0.75 -2.7 798,848 - ABZR87_RS03865 0.75 +0.5 799,004 + +1.3 799,004 + +1.0 799,005 - -1.6 799,005 - -0.3 799,040 + -1.1 799,040 + +2.3 799,040 + -0.9 799,040 + -0.3 799,040 + -0.2 799,040 + -0.8 799,040 + +0.8 799,040 + -0.9 799,040 + +1.1 799,040 + +0.1 799,040 + -0.6 799,040 + +0.2 799,040 + +0.1 799,041 - -0.1 799,041 - -1.6 799,041 - -0.8 799,041 - +3.5 799,041 - -0.3 799,042 + -0.6 799,043 - +3.0 799,043 - +1.8 799,043 - +0.6 799,094 - ABZR87_RS03870 0.11 -2.9 799,316 + ABZR87_RS03870 0.49 +1.3 799,316 + ABZR87_RS03870 0.49 -2.1 799,361 + ABZR87_RS03870 0.56 -1.1 799,361 + ABZR87_RS03870 0.56 +2.6 799,362 - ABZR87_RS03870 0.57 +0.3 799,362 - ABZR87_RS03870 0.57 +0.7 799,429 + ABZR87_RS03870 0.68 +0.3 799,429 + ABZR87_RS03870 0.68 -0.1 799,430 - ABZR87_RS03870 0.68 +1.8 799,490 + ABZR87_RS03870 0.78 +1.7 799,491 - ABZR87_RS03870 0.79 +1.0 799,511 + ABZR87_RS03870 0.82 -2.0 799,511 + ABZR87_RS03870 0.82 +0.2 799,511 + ABZR87_RS03870 0.82 +2.7 799,511 + ABZR87_RS03870 0.82 -0.2 799,511 + ABZR87_RS03870 0.82 -1.5 799,511 + ABZR87_RS03870 0.82 -0.4 799,511 + ABZR87_RS03870 0.82 -0.5 799,512 - ABZR87_RS03870 0.82 +1.4 799,512 - ABZR87_RS03870 0.82 -0.3 799,512 - ABZR87_RS03870 0.82 -1.1 799,512 - ABZR87_RS03870 0.82 -1.0 799,512 - ABZR87_RS03870 0.82 +0.1 799,512 - ABZR87_RS03870 0.82 -1.3 799,512 - ABZR87_RS03870 0.82 +0.2 799,513 - ABZR87_RS03870 0.82 +1.8 799,609 + +1.4 799,609 + +0.6 799,609 + +0.5 799,609 + +0.7 799,609 + +0.1 799,609 + +1.4 799,610 - -0.5 799,610 - +0.4 799,610 - -0.8 799,610 - +0.2 799,610 - +0.7 799,613 + -1.4 799,613 + +1.1 799,614 - +0.1 799,620 + +0.3 799,620 + -2.3 799,698 + ABZR87_RS03875 0.19 -0.6 799,698 + ABZR87_RS03875 0.19 -0.4 799,699 - ABZR87_RS03875 0.19 -0.9 799,699 - ABZR87_RS03875 0.19 +0.4 799,748 + ABZR87_RS03875 0.30 -0.5 799,748 + ABZR87_RS03875 0.30 +0.5 799,748 + ABZR87_RS03875 0.30 +0.3 799,748 + ABZR87_RS03875 0.30 -0.9 799,748 + ABZR87_RS03875 0.30 +1.3 799,748 + ABZR87_RS03875 0.30 +0.2 799,748 + ABZR87_RS03875 0.30 +1.0 799,748 + ABZR87_RS03875 0.30 +0.5 799,748 + ABZR87_RS03875 0.30 +0.4 799,748 + ABZR87_RS03875 0.30 -1.0 799,749 - ABZR87_RS03875 0.31 -0.8 799,749 - ABZR87_RS03875 0.31 -2.0 799,749 - ABZR87_RS03875 0.31 +0.7 799,749 - ABZR87_RS03875 0.31 +1.7 799,749 - ABZR87_RS03875 0.31 +1.2 799,749 - ABZR87_RS03875 0.31 -0.6 799,749 - ABZR87_RS03875 0.31 -0.3 799,749 - ABZR87_RS03875 0.31 -1.0 799,749 - ABZR87_RS03875 0.31 -0.6 799,890 + ABZR87_RS03875 0.64 +0.7 799,890 + ABZR87_RS03875 0.64 -0.1 799,891 - ABZR87_RS03875 0.64 +0.3
Or see this region's nucleotide sequence