Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03535

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03530 and ABZR87_RS03535 are separated by 129 nucleotidesABZR87_RS03535 and ABZR87_RS03540 are separated by 197 nucleotides ABZR87_RS03530: ABZR87_RS03530 - bifunctional glycoside hydrolase 114/ polysaccharide deacetylase family protein, at 741,317 to 744,094 _RS03530 ABZR87_RS03535: ABZR87_RS03535 - hypothetical protein, at 744,224 to 744,451 _RS03535 ABZR87_RS03540: ABZR87_RS03540 - SDR family oxidoreductase, at 744,649 to 745,437 _RS03540 Position (kb) 744 745Strain fitness (log2 ratio) -2 -1 0 1 2 3at 743.340 kb on + strand, within ABZR87_RS03530at 743.340 kb on + strand, within ABZR87_RS03530at 743.341 kb on - strand, within ABZR87_RS03530at 743.341 kb on - strand, within ABZR87_RS03530at 743.400 kb on + strand, within ABZR87_RS03530at 743.400 kb on + strand, within ABZR87_RS03530at 743.401 kb on - strand, within ABZR87_RS03530at 743.401 kb on - strand, within ABZR87_RS03530at 743.401 kb on - strand, within ABZR87_RS03530at 743.412 kb on + strand, within ABZR87_RS03530at 743.413 kb on - strand, within ABZR87_RS03530at 743.413 kb on - strand, within ABZR87_RS03530at 743.439 kb on + strand, within ABZR87_RS03530at 743.440 kb on - strand, within ABZR87_RS03530at 743.718 kb on + strand, within ABZR87_RS03530at 743.718 kb on + strand, within ABZR87_RS03530at 743.718 kb on + strand, within ABZR87_RS03530at 743.719 kb on - strand, within ABZR87_RS03530at 743.719 kb on - strand, within ABZR87_RS03530at 743.810 kb on + strand, within ABZR87_RS03530at 743.810 kb on + strand, within ABZR87_RS03530at 743.811 kb on - strand, within ABZR87_RS03530at 743.811 kb on - strand, within ABZR87_RS03530at 743.811 kb on - strand, within ABZR87_RS03530at 743.811 kb on - strand, within ABZR87_RS03530at 743.811 kb on - strand, within ABZR87_RS03530at 743.928 kb on + strandat 743.928 kb on + strandat 743.929 kb on - strandat 743.929 kb on - strandat 743.931 kb on + strandat 743.931 kb on + strandat 743.931 kb on + strandat 743.931 kb on + strandat 743.931 kb on + strandat 743.931 kb on + strandat 743.932 kb on - strandat 743.932 kb on - strandat 743.932 kb on - strandat 743.932 kb on - strandat 743.932 kb on - strandat 743.932 kb on - strandat 743.932 kb on - strandat 743.932 kb on - strandat 744.228 kb on + strandat 744.228 kb on + strandat 744.243 kb on + strandat 744.243 kb on + strandat 744.243 kb on + strandat 744.243 kb on + strandat 744.244 kb on - strandat 744.244 kb on - strandat 744.244 kb on - strandat 744.244 kb on - strandat 744.244 kb on - strandat 744.306 kb on + strand, within ABZR87_RS03535at 744.306 kb on + strand, within ABZR87_RS03535at 744.306 kb on + strand, within ABZR87_RS03535at 744.306 kb on + strand, within ABZR87_RS03535at 744.306 kb on + strand, within ABZR87_RS03535at 744.306 kb on + strand, within ABZR87_RS03535at 744.306 kb on + strand, within ABZR87_RS03535at 744.306 kb on + strand, within ABZR87_RS03535at 744.307 kb on - strand, within ABZR87_RS03535at 744.307 kb on - strand, within ABZR87_RS03535at 744.307 kb on - strand, within ABZR87_RS03535at 744.307 kb on - strand, within ABZR87_RS03535at 744.307 kb on - strand, within ABZR87_RS03535at 744.307 kb on - strand, within ABZR87_RS03535at 744.307 kb on - strand, within ABZR87_RS03535at 744.307 kb on - strand, within ABZR87_RS03535at 744.334 kb on - strand, within ABZR87_RS03535at 744.334 kb on - strand, within ABZR87_RS03535at 744.432 kb on + strandat 744.433 kb on - strandat 744.478 kb on - strandat 744.537 kb on + strandat 744.538 kb on - strandat 744.599 kb on + strandat 744.600 kb on - strandat 744.650 kb on + strandat 744.650 kb on + strandat 744.650 kb on + strandat 744.650 kb on + strandat 744.650 kb on + strandat 744.651 kb on - strandat 744.651 kb on - strandat 744.651 kb on - strandat 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.728 kb on + strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.729 kb on - strand, within ABZR87_RS03540at 744.977 kb on + strand, within ABZR87_RS03540at 744.977 kb on + strand, within ABZR87_RS03540at 745.067 kb on + strand, within ABZR87_RS03540at 745.067 kb on + strand, within ABZR87_RS03540at 745.067 kb on + strand, within ABZR87_RS03540at 745.068 kb on - strand, within ABZR87_RS03540at 745.363 kb on + strandat 745.364 kb on - strandat 745.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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743,340 + ABZR87_RS03530 0.73 -0.2
743,340 + ABZR87_RS03530 0.73 +0.0
743,341 - ABZR87_RS03530 0.73 -1.2
743,341 - ABZR87_RS03530 0.73 -0.1
743,400 + ABZR87_RS03530 0.75 -0.1
743,400 + ABZR87_RS03530 0.75 -0.3
743,401 - ABZR87_RS03530 0.75 +1.9
743,401 - ABZR87_RS03530 0.75 -1.7
743,401 - ABZR87_RS03530 0.75 -0.7
743,412 + ABZR87_RS03530 0.75 -0.6
743,413 - ABZR87_RS03530 0.75 -0.1
743,413 - ABZR87_RS03530 0.75 +1.2
743,439 + ABZR87_RS03530 0.76 -1.1
743,440 - ABZR87_RS03530 0.76 +0.2
743,718 + ABZR87_RS03530 0.86 +0.6
743,718 + ABZR87_RS03530 0.86 -1.7
743,718 + ABZR87_RS03530 0.86 -2.2
743,719 - ABZR87_RS03530 0.86 +1.1
743,719 - ABZR87_RS03530 0.86 -1.4
743,810 + ABZR87_RS03530 0.90 +1.0
743,810 + ABZR87_RS03530 0.90 +0.4
743,811 - ABZR87_RS03530 0.90 -1.2
743,811 - ABZR87_RS03530 0.90 +1.3
743,811 - ABZR87_RS03530 0.90 +0.5
743,811 - ABZR87_RS03530 0.90 +2.0
743,811 - ABZR87_RS03530 0.90 -0.4
743,928 + -0.5
743,928 + -1.7
743,929 - -2.1
743,929 - +0.2
743,931 + -2.0
743,931 + +0.2
743,931 + -0.7
743,931 + -1.6
743,931 + -2.0
743,931 + -0.1
743,932 - +0.7
743,932 - -0.0
743,932 - -0.7
743,932 - -1.0
743,932 - -0.5
743,932 - +0.8
743,932 - -0.6
743,932 - -0.9
744,228 + +1.0
744,228 + -1.5
744,243 + -1.3
744,243 + +2.2
744,243 + -0.4
744,243 + -1.1
744,244 - +2.1
744,244 - -0.1
744,244 - -0.9
744,244 - +1.2
744,244 - -0.2
744,306 + ABZR87_RS03535 0.36 -2.5
744,306 + ABZR87_RS03535 0.36 -0.7
744,306 + ABZR87_RS03535 0.36 -0.1
744,306 + ABZR87_RS03535 0.36 +3.4
744,306 + ABZR87_RS03535 0.36 -2.4
744,306 + ABZR87_RS03535 0.36 -1.4
744,306 + ABZR87_RS03535 0.36 +0.5
744,306 + ABZR87_RS03535 0.36 +2.7
744,307 - ABZR87_RS03535 0.36 +0.6
744,307 - ABZR87_RS03535 0.36 -0.1
744,307 - ABZR87_RS03535 0.36 -0.0
744,307 - ABZR87_RS03535 0.36 +0.0
744,307 - ABZR87_RS03535 0.36 -1.9
744,307 - ABZR87_RS03535 0.36 -2.3
744,307 - ABZR87_RS03535 0.36 +1.0
744,307 - ABZR87_RS03535 0.36 -1.1
744,334 - ABZR87_RS03535 0.48 +0.4
744,334 - ABZR87_RS03535 0.48 -0.1
744,432 + -0.4
744,433 - +0.6
744,478 - -0.5
744,537 + -0.7
744,538 - +0.7
744,599 + -0.5
744,600 - +2.2
744,650 + -0.7
744,650 + +1.3
744,650 + +0.4
744,650 + +0.6
744,650 + +0.4
744,651 - -1.8
744,651 - +0.2
744,651 - +0.3
744,728 + ABZR87_RS03540 0.10 -0.7
744,728 + ABZR87_RS03540 0.10 +0.4
744,728 + ABZR87_RS03540 0.10 +1.5
744,728 + ABZR87_RS03540 0.10 -0.3
744,728 + ABZR87_RS03540 0.10 +1.4
744,728 + ABZR87_RS03540 0.10 +1.6
744,728 + ABZR87_RS03540 0.10 +0.6
744,728 + ABZR87_RS03540 0.10 +0.4
744,728 + ABZR87_RS03540 0.10 -1.1
744,728 + ABZR87_RS03540 0.10 -0.5
744,728 + ABZR87_RS03540 0.10 -0.5
744,728 + ABZR87_RS03540 0.10 +1.3
744,729 - ABZR87_RS03540 0.10 +1.8
744,729 - ABZR87_RS03540 0.10 -2.0
744,729 - ABZR87_RS03540 0.10 -0.9
744,729 - ABZR87_RS03540 0.10 +0.1
744,729 - ABZR87_RS03540 0.10 -0.7
744,729 - ABZR87_RS03540 0.10 -0.1
744,729 - ABZR87_RS03540 0.10 -0.3
744,729 - ABZR87_RS03540 0.10 -0.6
744,729 - ABZR87_RS03540 0.10 -1.1
744,729 - ABZR87_RS03540 0.10 +0.4
744,729 - ABZR87_RS03540 0.10 -1.0
744,977 + ABZR87_RS03540 0.42 -0.7
744,977 + ABZR87_RS03540 0.42 +0.1
745,067 + ABZR87_RS03540 0.53 -1.0
745,067 + ABZR87_RS03540 0.53 -0.1
745,067 + ABZR87_RS03540 0.53 +0.4
745,068 - ABZR87_RS03540 0.53 -1.2
745,363 + +0.3
745,364 - -0.2
745,364 - +0.6

Or see this region's nucleotide sequence