Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03460

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03455 and ABZR87_RS03460 are separated by 22 nucleotidesABZR87_RS03460 and ABZR87_RS03465 are separated by 575 nucleotides ABZR87_RS03455: ABZR87_RS03455 - type II secretion system ATPase GspE, at 721,482 to 723,038 _RS03455 ABZR87_RS03460: ABZR87_RS03460 - type II secretion system inner membrane protein GspF, at 723,061 to 724,272 _RS03460 ABZR87_RS03465: ABZR87_RS03465 - pyridoxamine 5'-phosphate oxidase family protein, at 724,848 to 725,531 _RS03465 Position (kb) 723 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 722.113 kb on + strand, within ABZR87_RS03455at 722.113 kb on + strand, within ABZR87_RS03455at 722.213 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.317 kb on - strand, within ABZR87_RS03455at 722.382 kb on + strand, within ABZR87_RS03455at 722.382 kb on + strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.839 kb on - strand, within ABZR87_RS03455at 722.859 kb on + strand, within ABZR87_RS03455at 722.859 kb on + strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 723.036 kb on + strandat 723.036 kb on + strandat 723.036 kb on + strandat 723.036 kb on + strandat 723.037 kb on - strandat 723.055 kb on + strandat 723.055 kb on + strandat 723.056 kb on - strandat 723.056 kb on - strandat 723.076 kb on + strandat 723.352 kb on + strand, within ABZR87_RS03460at 723.352 kb on + strand, within ABZR87_RS03460at 723.352 kb on + strand, within ABZR87_RS03460at 723.353 kb on - strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.521 kb on - strand, within ABZR87_RS03460at 723.572 kb on - strand, within ABZR87_RS03460at 723.625 kb on + strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.797 kb on + strand, within ABZR87_RS03460at 723.798 kb on - strand, within ABZR87_RS03460at 723.798 kb on - strand, within ABZR87_RS03460at 723.860 kb on - strand, within ABZR87_RS03460at 724.246 kb on - strandat 724.254 kb on + strandat 724.255 kb on - strandat 724.255 kb on - strandat 724.255 kb on - strandat 724.596 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.907 kb on - strandat 724.907 kb on - strandat 724.907 kb on - strandat 724.907 kb on - strandat 725.141 kb on + strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.147 kb on + strand, within ABZR87_RS03465at 725.148 kb on - strand, within ABZR87_RS03465at 725.197 kb on + strand, within ABZR87_RS03465at 725.197 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.216 kb on - strand, within ABZR87_RS03465

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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722,113 + ABZR87_RS03455 0.41 -1.6
722,113 + ABZR87_RS03455 0.41 -0.4
722,213 + ABZR87_RS03455 0.47 +3.6
722,316 + ABZR87_RS03455 0.54 +0.2
722,316 + ABZR87_RS03455 0.54 -0.1
722,316 + ABZR87_RS03455 0.54 -0.2
722,317 - ABZR87_RS03455 0.54 -2.8
722,382 + ABZR87_RS03455 0.58 +0.3
722,382 + ABZR87_RS03455 0.58 -2.7
722,383 - ABZR87_RS03455 0.58 -0.7
722,383 - ABZR87_RS03455 0.58 -1.1
722,383 - ABZR87_RS03455 0.58 -0.1
722,383 - ABZR87_RS03455 0.58 +1.1
722,383 - ABZR87_RS03455 0.58 -0.4
722,551 + ABZR87_RS03455 0.69 -1.9
722,551 + ABZR87_RS03455 0.69 -2.3
722,551 + ABZR87_RS03455 0.69 +0.5
722,551 + ABZR87_RS03455 0.69 -1.0
722,551 + ABZR87_RS03455 0.69 -1.1
722,552 - ABZR87_RS03455 0.69 +3.0
722,552 - ABZR87_RS03455 0.69 -0.3
722,552 - ABZR87_RS03455 0.69 -1.7
722,552 - ABZR87_RS03455 0.69 -0.5
722,671 + ABZR87_RS03455 0.76 -1.5
722,671 + ABZR87_RS03455 0.76 -1.3
722,671 + ABZR87_RS03455 0.76 -2.1
722,671 + ABZR87_RS03455 0.76 -2.5
722,839 - ABZR87_RS03455 0.87 -1.8
722,859 + ABZR87_RS03455 0.88 -1.1
722,859 + ABZR87_RS03455 0.88 -0.5
722,860 - ABZR87_RS03455 0.89 -2.5
722,860 - ABZR87_RS03455 0.89 -0.8
722,860 - ABZR87_RS03455 0.89 -1.3
723,036 + -0.1
723,036 + -1.7
723,036 + -0.9
723,036 + +0.3
723,037 - -1.6
723,055 + -1.4
723,055 + -1.0
723,056 - -1.6
723,056 - -2.2
723,076 + +1.0
723,352 + ABZR87_RS03460 0.24 -1.0
723,352 + ABZR87_RS03460 0.24 +1.8
723,352 + ABZR87_RS03460 0.24 -1.4
723,353 - ABZR87_RS03460 0.24 -1.2
723,451 + ABZR87_RS03460 0.32 -1.0
723,451 + ABZR87_RS03460 0.32 -1.3
723,451 + ABZR87_RS03460 0.32 -2.3
723,451 + ABZR87_RS03460 0.32 +0.3
723,452 - ABZR87_RS03460 0.32 -1.3
723,452 - ABZR87_RS03460 0.32 -1.6
723,452 - ABZR87_RS03460 0.32 -0.2
723,452 - ABZR87_RS03460 0.32 -2.3
723,520 + ABZR87_RS03460 0.38 -0.7
723,520 + ABZR87_RS03460 0.38 -2.2
723,520 + ABZR87_RS03460 0.38 +0.3
723,520 + ABZR87_RS03460 0.38 -0.7
723,520 + ABZR87_RS03460 0.38 -1.1
723,520 + ABZR87_RS03460 0.38 -1.9
723,521 - ABZR87_RS03460 0.38 -3.0
723,572 - ABZR87_RS03460 0.42 +0.3
723,625 + ABZR87_RS03460 0.47 -2.3
723,626 - ABZR87_RS03460 0.47 -2.5
723,626 - ABZR87_RS03460 0.47 -2.1
723,626 - ABZR87_RS03460 0.47 -0.3
723,626 - ABZR87_RS03460 0.47 -0.1
723,626 - ABZR87_RS03460 0.47 -1.5
723,650 + ABZR87_RS03460 0.49 +2.0
723,650 + ABZR87_RS03460 0.49 -2.0
723,650 + ABZR87_RS03460 0.49 +1.0
723,651 - ABZR87_RS03460 0.49 -0.3
723,651 - ABZR87_RS03460 0.49 -2.2
723,651 - ABZR87_RS03460 0.49 -1.7
723,651 - ABZR87_RS03460 0.49 -2.1
723,651 - ABZR87_RS03460 0.49 -1.0
723,651 - ABZR87_RS03460 0.49 -0.7
723,797 + ABZR87_RS03460 0.61 -0.2
723,798 - ABZR87_RS03460 0.61 -2.7
723,798 - ABZR87_RS03460 0.61 -1.8
723,860 - ABZR87_RS03460 0.66 +0.5
724,246 - +0.7
724,254 + -1.5
724,255 - -1.4
724,255 - +0.7
724,255 - -1.0
724,596 + -1.1
724,906 + -2.3
724,906 + +1.1
724,906 + -2.0
724,906 + -0.7
724,907 - -1.7
724,907 - -1.8
724,907 - +0.9
724,907 - +0.0
725,141 + ABZR87_RS03465 0.43 -0.6
725,142 - ABZR87_RS03465 0.43 -2.1
725,142 - ABZR87_RS03465 0.43 -0.7
725,142 - ABZR87_RS03465 0.43 +3.6
725,147 + ABZR87_RS03465 0.44 +0.8
725,148 - ABZR87_RS03465 0.44 +0.3
725,197 + ABZR87_RS03465 0.51 +2.0
725,197 + ABZR87_RS03465 0.51 +2.0
725,215 + ABZR87_RS03465 0.54 -2.1
725,215 + ABZR87_RS03465 0.54 -0.9
725,215 + ABZR87_RS03465 0.54 +0.0
725,216 - ABZR87_RS03465 0.54 -1.3

Or see this region's nucleotide sequence