Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03350 and ABZR87_RS03355 overlap by 10 nucleotides ABZR87_RS03355 and ABZR87_RS03360 are separated by 18 nucleotides ABZR87_RS03360 and ABZR87_RS03365 are separated by 37 nucleotides ABZR87_RS03365 and ABZR87_RS03370 are separated by 7 nucleotides ABZR87_RS03370 and ABZR87_RS03375 are separated by 56 nucleotides
ABZR87_RS03350: ABZR87_RS03350 - LysM domain-containing protein, at 704,818 to 705,561
_RS03350
ABZR87_RS03355: ABZR87_RS03355 - hypothetical protein, at 705,552 to 705,965
_RS03355
ABZR87_RS03360: ABZR87_RS03360 - hypothetical protein, at 705,984 to 706,421
_RS03360
ABZR87_RS03365: ABZR87_RS03365 - SgcJ/EcaC family oxidoreductase, at 706,459 to 706,848
_RS03365
ABZR87_RS03370: ABZR87_RS03370 - hypothetical protein, at 706,856 to 707,110
_RS03370
ABZR87_RS03375: ABZR87_RS03375 - hypothetical protein, at 707,167 to 707,556
_RS03375
Position (kb) 705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 705.096 kb on + strand, within ABZR87_RS03350 at 705.096 kb on + strand, within ABZR87_RS03350 at 705.096 kb on + strand, within ABZR87_RS03350 at 705.096 kb on + strand, within ABZR87_RS03350 at 705.097 kb on - strand, within ABZR87_RS03350 at 705.097 kb on - strand, within ABZR87_RS03350 at 705.277 kb on + strand, within ABZR87_RS03350 at 705.277 kb on + strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.403 kb on + strand, within ABZR87_RS03350 at 705.403 kb on + strand, within ABZR87_RS03350 at 705.403 kb on + strand, within ABZR87_RS03350 at 705.404 kb on - strand, within ABZR87_RS03350 at 705.433 kb on - strand, within ABZR87_RS03350 at 705.475 kb on + strand, within ABZR87_RS03350 at 705.475 kb on + strand, within ABZR87_RS03350 at 705.475 kb on + strand, within ABZR87_RS03350 at 705.475 kb on + strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.496 kb on + strand at 705.496 kb on + strand at 705.496 kb on + strand at 705.496 kb on + strand at 705.496 kb on + strand at 705.496 kb on + strand at 705.497 kb on - strand at 705.497 kb on - strand at 705.514 kb on + strand at 705.514 kb on + strand at 705.515 kb on - strand at 705.515 kb on - strand at 705.515 kb on - strand at 705.515 kb on - strand at 705.559 kb on + strand at 705.559 kb on + strand at 705.560 kb on - strand at 705.560 kb on - strand at 705.560 kb on - strand at 705.618 kb on - strand, within ABZR87_RS03355 at 705.657 kb on + strand, within ABZR87_RS03355 at 705.857 kb on - strand, within ABZR87_RS03355 at 705.963 kb on + strand at 705.964 kb on - strand at 705.964 kb on - strand at 705.964 kb on - strand at 705.964 kb on - strand at 705.964 kb on - strand at 705.964 kb on - strand at 706.029 kb on + strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.030 kb on - strand, within ABZR87_RS03360 at 706.101 kb on + strand, within ABZR87_RS03360 at 706.101 kb on + strand, within ABZR87_RS03360 at 706.102 kb on - strand, within ABZR87_RS03360 at 706.119 kb on + strand, within ABZR87_RS03360 at 706.120 kb on - strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.155 kb on + strand, within ABZR87_RS03360 at 706.156 kb on - strand, within ABZR87_RS03360 at 706.156 kb on - strand, within ABZR87_RS03360 at 706.246 kb on - strand, within ABZR87_RS03360 at 706.246 kb on - strand, within ABZR87_RS03360 at 706.246 kb on - strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.248 kb on + strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.249 kb on - strand, within ABZR87_RS03360 at 706.352 kb on + strand, within ABZR87_RS03360 at 706.363 kb on + strand, within ABZR87_RS03360 at 706.363 kb on + strand, within ABZR87_RS03360 at 706.364 kb on - strand, within ABZR87_RS03360 at 706.364 kb on - strand, within ABZR87_RS03360 at 706.364 kb on - strand, within ABZR87_RS03360 at 706.364 kb on - strand, within ABZR87_RS03360 at 706.419 kb on + strand at 706.420 kb on - strand at 706.420 kb on - strand at 706.420 kb on - strand at 706.420 kb on - strand at 706.660 kb on - strand, within ABZR87_RS03365 at 706.660 kb on - strand, within ABZR87_RS03365 at 706.693 kb on + strand, within ABZR87_RS03365 at 706.693 kb on + strand, within ABZR87_RS03365 at 706.693 kb on + strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.694 kb on - strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.741 kb on + strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.742 kb on - strand, within ABZR87_RS03365 at 706.849 kb on + strand at 706.850 kb on - strand at 706.866 kb on + strand at 706.867 kb on - strand at 706.867 kb on - strand at 706.867 kb on - strand at 706.867 kb on - strand at 706.899 kb on + strand, within ABZR87_RS03370 at 706.900 kb on - strand, within ABZR87_RS03370 at 706.900 kb on - strand, within ABZR87_RS03370 at 706.900 kb on - strand, within ABZR87_RS03370 at 706.951 kb on - strand, within ABZR87_RS03370 at 706.951 kb on - strand, within ABZR87_RS03370 at 706.951 kb on - strand, within ABZR87_RS03370 at 706.964 kb on + strand, within ABZR87_RS03370 at 707.003 kb on + strand, within ABZR87_RS03370 at 707.044 kb on + strand, within ABZR87_RS03370 at 707.044 kb on + strand, within ABZR87_RS03370 at 707.045 kb on - strand, within ABZR87_RS03370 at 707.047 kb on - strand, within ABZR87_RS03370 at 707.050 kb on + strand, within ABZR87_RS03370 at 707.050 kb on + strand, within ABZR87_RS03370 at 707.051 kb on - strand, within ABZR87_RS03370 at 707.051 kb on - strand, within ABZR87_RS03370 at 707.051 kb on - strand, within ABZR87_RS03370 at 707.088 kb on + strand at 707.108 kb on + strand at 707.108 kb on + strand at 707.109 kb on - strand at 707.135 kb on + strand at 707.135 kb on + strand at 707.136 kb on - strand at 707.136 kb on - strand at 707.136 kb on - strand at 707.136 kb on - strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.141 kb on + strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.142 kb on - strand at 707.224 kb on + strand, within ABZR87_RS03375 at 707.224 kb on + strand, within ABZR87_RS03375 at 707.230 kb on + strand, within ABZR87_RS03375 at 707.230 kb on + strand, within ABZR87_RS03375 at 707.230 kb on + strand, within ABZR87_RS03375 at 707.231 kb on - strand, within ABZR87_RS03375 at 707.231 kb on - strand, within ABZR87_RS03375 at 707.231 kb on - strand, within ABZR87_RS03375 at 707.332 kb on + strand, within ABZR87_RS03375 at 707.333 kb on - strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.348 kb on + strand, within ABZR87_RS03375 at 707.349 kb on - strand, within ABZR87_RS03375 at 707.349 kb on - strand, within ABZR87_RS03375 at 707.349 kb on - strand, within ABZR87_RS03375 at 707.349 kb on - strand, within ABZR87_RS03375 at 707.360 kb on + strand, within ABZR87_RS03375 at 707.360 kb on + strand, within ABZR87_RS03375 at 707.361 kb on - strand, within ABZR87_RS03375 at 707.361 kb on - strand, within ABZR87_RS03375 at 707.361 kb on - strand, within ABZR87_RS03375 at 707.379 kb on + strand, within ABZR87_RS03375 at 707.380 kb on - strand, within ABZR87_RS03375 at 707.394 kb on - strand, within ABZR87_RS03375 at 707.398 kb on + strand, within ABZR87_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 705,096 + ABZR87_RS03350 0.37 -1.0 705,096 + ABZR87_RS03350 0.37 -0.2 705,096 + ABZR87_RS03350 0.37 +1.6 705,096 + ABZR87_RS03350 0.37 -2.0 705,097 - ABZR87_RS03350 0.38 -0.8 705,097 - ABZR87_RS03350 0.38 +0.9 705,277 + ABZR87_RS03350 0.62 -0.7 705,277 + ABZR87_RS03350 0.62 -1.1 705,278 - ABZR87_RS03350 0.62 +0.4 705,278 - ABZR87_RS03350 0.62 +3.0 705,278 - ABZR87_RS03350 0.62 -1.1 705,278 - ABZR87_RS03350 0.62 -0.4 705,278 - ABZR87_RS03350 0.62 -0.3 705,278 - ABZR87_RS03350 0.62 +1.8 705,278 - ABZR87_RS03350 0.62 -1.5 705,278 - ABZR87_RS03350 0.62 +1.0 705,278 - ABZR87_RS03350 0.62 -0.0 705,303 + ABZR87_RS03350 0.65 -0.0 705,303 + ABZR87_RS03350 0.65 +2.1 705,303 + ABZR87_RS03350 0.65 -0.2 705,303 + ABZR87_RS03350 0.65 +0.2 705,303 + ABZR87_RS03350 0.65 +0.1 705,303 + ABZR87_RS03350 0.65 -2.6 705,303 + ABZR87_RS03350 0.65 -1.7 705,303 + ABZR87_RS03350 0.65 +1.1 705,304 - ABZR87_RS03350 0.65 +1.2 705,304 - ABZR87_RS03350 0.65 -0.2 705,304 - ABZR87_RS03350 0.65 +1.1 705,304 - ABZR87_RS03350 0.65 +0.6 705,304 - ABZR87_RS03350 0.65 -0.3 705,304 - ABZR87_RS03350 0.65 -0.3 705,304 - ABZR87_RS03350 0.65 -1.0 705,304 - ABZR87_RS03350 0.65 -0.6 705,304 - ABZR87_RS03350 0.65 +0.3 705,403 + ABZR87_RS03350 0.79 -0.1 705,403 + ABZR87_RS03350 0.79 +0.8 705,403 + ABZR87_RS03350 0.79 +0.2 705,404 - ABZR87_RS03350 0.79 +1.3 705,433 - ABZR87_RS03350 0.83 -0.6 705,475 + ABZR87_RS03350 0.88 +0.2 705,475 + ABZR87_RS03350 0.88 +1.7 705,475 + ABZR87_RS03350 0.88 +0.2 705,475 + ABZR87_RS03350 0.88 +1.6 705,476 - ABZR87_RS03350 0.88 -0.8 705,476 - ABZR87_RS03350 0.88 -2.2 705,476 - ABZR87_RS03350 0.88 -1.8 705,476 - ABZR87_RS03350 0.88 +1.2 705,476 - ABZR87_RS03350 0.88 +1.3 705,476 - ABZR87_RS03350 0.88 +0.3 705,496 + -0.7 705,496 + -0.9 705,496 + -1.1 705,496 + +0.1 705,496 + +0.6 705,496 + -1.5 705,497 - -0.6 705,497 - -0.5 705,514 + -1.1 705,514 + +1.2 705,515 - -1.1 705,515 - -1.1 705,515 - +1.2 705,515 - +0.8 705,559 + +4.6 705,559 + +3.0 705,560 - +4.6 705,560 - +2.6 705,560 - +2.3 705,618 - ABZR87_RS03355 0.16 +4.6 705,657 + ABZR87_RS03355 0.25 +4.6 705,857 - ABZR87_RS03355 0.74 +4.6 705,963 + +1.2 705,964 - +0.6 705,964 - +0.7 705,964 - -0.2 705,964 - -1.1 705,964 - -0.5 705,964 - +0.3 706,029 + ABZR87_RS03360 0.10 -1.1 706,030 - ABZR87_RS03360 0.11 -1.0 706,030 - ABZR87_RS03360 0.11 +0.1 706,030 - ABZR87_RS03360 0.11 -0.1 706,030 - ABZR87_RS03360 0.11 -0.9 706,030 - ABZR87_RS03360 0.11 -0.5 706,101 + ABZR87_RS03360 0.27 +0.3 706,101 + ABZR87_RS03360 0.27 -0.9 706,102 - ABZR87_RS03360 0.27 -0.4 706,119 + ABZR87_RS03360 0.31 +0.4 706,120 - ABZR87_RS03360 0.31 -0.7 706,155 + ABZR87_RS03360 0.39 +0.5 706,155 + ABZR87_RS03360 0.39 -1.6 706,155 + ABZR87_RS03360 0.39 -0.0 706,155 + ABZR87_RS03360 0.39 +0.9 706,155 + ABZR87_RS03360 0.39 -1.0 706,156 - ABZR87_RS03360 0.39 -0.9 706,156 - ABZR87_RS03360 0.39 -0.3 706,246 - ABZR87_RS03360 0.60 -1.2 706,246 - ABZR87_RS03360 0.60 -0.9 706,246 - ABZR87_RS03360 0.60 -0.4 706,248 + ABZR87_RS03360 0.60 -0.4 706,248 + ABZR87_RS03360 0.60 -2.2 706,248 + ABZR87_RS03360 0.60 -0.2 706,248 + ABZR87_RS03360 0.60 +0.3 706,248 + ABZR87_RS03360 0.60 +0.3 706,248 + ABZR87_RS03360 0.60 -0.0 706,249 - ABZR87_RS03360 0.61 +0.7 706,249 - ABZR87_RS03360 0.61 +0.2 706,249 - ABZR87_RS03360 0.61 -0.0 706,249 - ABZR87_RS03360 0.61 +0.9 706,249 - ABZR87_RS03360 0.61 -0.7 706,249 - ABZR87_RS03360 0.61 +0.0 706,249 - ABZR87_RS03360 0.61 -0.4 706,249 - ABZR87_RS03360 0.61 -1.0 706,352 + ABZR87_RS03360 0.84 +0.3 706,363 + ABZR87_RS03360 0.87 +0.6 706,363 + ABZR87_RS03360 0.87 -0.4 706,364 - ABZR87_RS03360 0.87 -1.2 706,364 - ABZR87_RS03360 0.87 -0.6 706,364 - ABZR87_RS03360 0.87 +2.3 706,364 - ABZR87_RS03360 0.87 -2.8 706,419 + +1.8 706,420 - +0.4 706,420 - +0.6 706,420 - -0.6 706,420 - +0.6 706,660 - ABZR87_RS03365 0.52 +1.4 706,660 - ABZR87_RS03365 0.52 +0.4 706,693 + ABZR87_RS03365 0.60 +1.3 706,693 + ABZR87_RS03365 0.60 +0.0 706,693 + ABZR87_RS03365 0.60 -1.1 706,694 - ABZR87_RS03365 0.60 -0.1 706,694 - ABZR87_RS03365 0.60 +0.4 706,694 - ABZR87_RS03365 0.60 -1.1 706,694 - ABZR87_RS03365 0.60 -1.7 706,694 - ABZR87_RS03365 0.60 -0.6 706,741 + ABZR87_RS03365 0.72 +3.0 706,741 + ABZR87_RS03365 0.72 -0.3 706,741 + ABZR87_RS03365 0.72 +0.0 706,741 + ABZR87_RS03365 0.72 -0.3 706,741 + ABZR87_RS03365 0.72 +0.0 706,742 - ABZR87_RS03365 0.73 +0.4 706,742 - ABZR87_RS03365 0.73 +0.2 706,742 - ABZR87_RS03365 0.73 -0.0 706,742 - ABZR87_RS03365 0.73 -1.3 706,742 - ABZR87_RS03365 0.73 +1.1 706,742 - ABZR87_RS03365 0.73 -0.3 706,849 + -0.9 706,850 - +0.1 706,866 + -0.1 706,867 - +0.4 706,867 - +0.7 706,867 - -0.9 706,867 - -1.3 706,899 + ABZR87_RS03370 0.17 +0.9 706,900 - ABZR87_RS03370 0.17 +0.8 706,900 - ABZR87_RS03370 0.17 +0.5 706,900 - ABZR87_RS03370 0.17 +0.8 706,951 - ABZR87_RS03370 0.37 -0.5 706,951 - ABZR87_RS03370 0.37 +1.9 706,951 - ABZR87_RS03370 0.37 -0.0 706,964 + ABZR87_RS03370 0.42 +1.4 707,003 + ABZR87_RS03370 0.58 -0.7 707,044 + ABZR87_RS03370 0.74 -1.7 707,044 + ABZR87_RS03370 0.74 -0.9 707,045 - ABZR87_RS03370 0.74 +1.0 707,047 - ABZR87_RS03370 0.75 +0.5 707,050 + ABZR87_RS03370 0.76 -1.5 707,050 + ABZR87_RS03370 0.76 +1.3 707,051 - ABZR87_RS03370 0.76 +0.8 707,051 - ABZR87_RS03370 0.76 +0.4 707,051 - ABZR87_RS03370 0.76 +2.6 707,088 + -1.2 707,108 + +0.6 707,108 + +1.1 707,109 - +0.1 707,135 + -0.7 707,135 + -0.2 707,136 - +0.2 707,136 - -1.2 707,136 - +1.4 707,136 - +2.7 707,141 + +1.6 707,141 + -0.3 707,141 + +4.6 707,141 + -0.9 707,141 + +0.9 707,141 + -0.5 707,142 - -1.4 707,142 - +0.2 707,142 - -0.5 707,142 - +1.4 707,142 - -0.0 707,142 - -2.1 707,142 - +1.1 707,142 - -0.0 707,142 - +1.2 707,224 + ABZR87_RS03375 0.15 -1.3 707,224 + ABZR87_RS03375 0.15 -1.4 707,230 + ABZR87_RS03375 0.16 +1.2 707,230 + ABZR87_RS03375 0.16 +0.5 707,230 + ABZR87_RS03375 0.16 +0.2 707,231 - ABZR87_RS03375 0.16 -1.0 707,231 - ABZR87_RS03375 0.16 -0.6 707,231 - ABZR87_RS03375 0.16 +0.7 707,332 + ABZR87_RS03375 0.42 +0.7 707,333 - ABZR87_RS03375 0.43 +0.7 707,348 + ABZR87_RS03375 0.46 -1.0 707,348 + ABZR87_RS03375 0.46 +0.0 707,348 + ABZR87_RS03375 0.46 -1.3 707,348 + ABZR87_RS03375 0.46 -0.1 707,348 + ABZR87_RS03375 0.46 +0.0 707,349 - ABZR87_RS03375 0.47 -0.5 707,349 - ABZR87_RS03375 0.47 -1.5 707,349 - ABZR87_RS03375 0.47 -1.0 707,349 - ABZR87_RS03375 0.47 +1.0 707,360 + ABZR87_RS03375 0.49 -1.0 707,360 + ABZR87_RS03375 0.49 +0.1 707,361 - ABZR87_RS03375 0.50 -1.7 707,361 - ABZR87_RS03375 0.50 +2.6 707,361 - ABZR87_RS03375 0.50 -0.4 707,379 + ABZR87_RS03375 0.54 +1.1 707,380 - ABZR87_RS03375 0.55 -0.3 707,394 - ABZR87_RS03375 0.58 +0.9 707,398 + ABZR87_RS03375 0.59 -0.4
Or see this region's nucleotide sequence