Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03045

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03035 and ABZR87_RS03040 overlap by 8 nucleotidesABZR87_RS03040 and ABZR87_RS03045 are separated by 22 nucleotidesABZR87_RS03045 and ABZR87_RS03050 are separated by 172 nucleotides ABZR87_RS03035: ABZR87_RS03035 - sugar ABC transporter permease, at 637,020 to 637,910 _RS03035 ABZR87_RS03040: ABZR87_RS03040 - carbohydrate ABC transporter permease, at 637,903 to 638,736 _RS03040 ABZR87_RS03045: ABZR87_RS03045 - DUF2160 domain-containing protein, at 638,759 to 639,040 _RS03045 ABZR87_RS03050: ABZR87_RS03050 - ABC transporter substrate-binding protein, at 639,213 to 640,958 _RS03050 Position (kb) 638 639 640Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.816 kb on - strand, within ABZR87_RS03035at 637.816 kb on - strand, within ABZR87_RS03035at 637.851 kb on + strandat 637.851 kb on + strandat 637.852 kb on - strandat 637.908 kb on + strandat 637.908 kb on + strandat 637.909 kb on - strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.996 kb on + strand, within ABZR87_RS03040at 637.997 kb on - strand, within ABZR87_RS03040at 637.997 kb on - strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.113 kb on + strand, within ABZR87_RS03040at 638.122 kb on + strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.191 kb on + strand, within ABZR87_RS03040at 638.207 kb on - strand, within ABZR87_RS03040at 638.300 kb on - strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.444 kb on - strand, within ABZR87_RS03040at 638.444 kb on - strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.701 kb on + strandat 638.701 kb on + strandat 638.702 kb on - strandat 638.702 kb on - strandat 638.936 kb on + strand, within ABZR87_RS03045at 638.936 kb on + strand, within ABZR87_RS03045at 638.936 kb on + strand, within ABZR87_RS03045at 638.937 kb on - strand, within ABZR87_RS03045at 638.937 kb on - strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 639.116 kb on + strandat 639.117 kb on - strandat 639.117 kb on - strandat 639.190 kb on + strandat 639.191 kb on - strandat 639.191 kb on - strandat 639.208 kb on + strandat 639.208 kb on + strandat 639.209 kb on - strandat 639.209 kb on - strandat 639.209 kb on - strandat 639.462 kb on + strand, within ABZR87_RS03050at 639.462 kb on + strand, within ABZR87_RS03050at 639.463 kb on - strand, within ABZR87_RS03050at 639.463 kb on - strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.631 kb on - strand, within ABZR87_RS03050at 639.631 kb on - strand, within ABZR87_RS03050at 639.663 kb on + strand, within ABZR87_RS03050at 639.663 kb on + strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.759 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.852 kb on + strand, within ABZR87_RS03050at 639.852 kb on + strand, within ABZR87_RS03050at 639.852 kb on + strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.891 kb on + strand, within ABZR87_RS03050at 639.891 kb on + strand, within ABZR87_RS03050at 639.892 kb on - strand, within ABZR87_RS03050at 639.892 kb on - strand, within ABZR87_RS03050at 639.892 kb on - strand, within ABZR87_RS03050at 639.934 kb on + strand, within ABZR87_RS03050at 639.935 kb on - strand, within ABZR87_RS03050

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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637,815 + ABZR87_RS03035 0.89 +1.3
637,815 + ABZR87_RS03035 0.89 +0.7
637,815 + ABZR87_RS03035 0.89 +1.1
637,815 + ABZR87_RS03035 0.89 +1.7
637,815 + ABZR87_RS03035 0.89 -0.6
637,816 - ABZR87_RS03035 0.89 +0.5
637,816 - ABZR87_RS03035 0.89 +3.6
637,851 + -1.3
637,851 + -1.3
637,852 - -0.5
637,908 + +0.5
637,908 + -1.0
637,909 - +0.4
637,969 + -0.1
637,969 + +0.3
637,969 + +0.3
637,969 + +2.4
637,970 - +0.6
637,970 - -1.3
637,970 - -1.4
637,970 - -0.9
637,970 - +0.7
637,970 - +0.5
637,996 + ABZR87_RS03040 0.11 -2.4
637,997 - ABZR87_RS03040 0.11 -0.9
637,997 - ABZR87_RS03040 0.11 +0.9
638,083 + ABZR87_RS03040 0.22 +0.9
638,083 + ABZR87_RS03040 0.22 -1.1
638,083 + ABZR87_RS03040 0.22 +0.3
638,083 + ABZR87_RS03040 0.22 -0.6
638,084 - ABZR87_RS03040 0.22 -0.2
638,084 - ABZR87_RS03040 0.22 -0.3
638,084 - ABZR87_RS03040 0.22 +0.5
638,084 - ABZR87_RS03040 0.22 -1.7
638,084 - ABZR87_RS03040 0.22 -0.9
638,084 - ABZR87_RS03040 0.22 +0.9
638,113 + ABZR87_RS03040 0.25 +0.8
638,122 + ABZR87_RS03040 0.26 -0.3
638,123 - ABZR87_RS03040 0.26 -2.8
638,123 - ABZR87_RS03040 0.26 +0.2
638,123 - ABZR87_RS03040 0.26 -0.3
638,140 + ABZR87_RS03040 0.28 +1.4
638,140 + ABZR87_RS03040 0.28 -0.8
638,140 + ABZR87_RS03040 0.28 -0.9
638,140 + ABZR87_RS03040 0.28 +0.2
638,140 + ABZR87_RS03040 0.28 -0.9
638,140 + ABZR87_RS03040 0.28 -0.6
638,140 + ABZR87_RS03040 0.28 +0.3
638,140 + ABZR87_RS03040 0.28 +0.0
638,140 + ABZR87_RS03040 0.28 -0.8
638,141 - ABZR87_RS03040 0.29 -0.6
638,141 - ABZR87_RS03040 0.29 -1.1
638,141 - ABZR87_RS03040 0.29 +0.3
638,141 - ABZR87_RS03040 0.29 -0.2
638,141 - ABZR87_RS03040 0.29 -1.8
638,141 - ABZR87_RS03040 0.29 -0.4
638,191 + ABZR87_RS03040 0.35 -0.4
638,207 - ABZR87_RS03040 0.36 -0.5
638,300 - ABZR87_RS03040 0.48 -2.2
638,431 + ABZR87_RS03040 0.63 +0.4
638,431 + ABZR87_RS03040 0.63 -0.6
638,431 + ABZR87_RS03040 0.63 -1.5
638,444 - ABZR87_RS03040 0.65 -0.7
638,444 - ABZR87_RS03040 0.65 +1.3
638,529 + ABZR87_RS03040 0.75 -0.5
638,529 + ABZR87_RS03040 0.75 -0.6
638,529 + ABZR87_RS03040 0.75 +0.1
638,530 - ABZR87_RS03040 0.75 -0.6
638,530 - ABZR87_RS03040 0.75 -0.4
638,530 - ABZR87_RS03040 0.75 -1.9
638,530 - ABZR87_RS03040 0.75 -0.9
638,701 + -1.6
638,701 + -0.2
638,702 - -1.5
638,702 - +0.3
638,936 + ABZR87_RS03045 0.63 +0.2
638,936 + ABZR87_RS03045 0.63 -1.0
638,936 + ABZR87_RS03045 0.63 -0.8
638,937 - ABZR87_RS03045 0.63 +0.4
638,937 - ABZR87_RS03045 0.63 -0.8
638,938 + ABZR87_RS03045 0.63 +2.0
638,938 + ABZR87_RS03045 0.63 -0.6
638,938 + ABZR87_RS03045 0.63 -0.9
638,939 - ABZR87_RS03045 0.64 -1.0
638,939 - ABZR87_RS03045 0.64 -1.1
638,939 - ABZR87_RS03045 0.64 -2.2
638,939 - ABZR87_RS03045 0.64 -1.7
639,116 + -0.1
639,117 - +0.9
639,117 - +0.2
639,190 + +2.9
639,191 - -1.2
639,191 - +1.0
639,208 + -1.1
639,208 + -1.3
639,209 - -0.5
639,209 - -1.3
639,209 - -0.5
639,462 + ABZR87_RS03050 0.14 -0.9
639,462 + ABZR87_RS03050 0.14 -1.5
639,463 - ABZR87_RS03050 0.14 +0.1
639,463 - ABZR87_RS03050 0.14 -0.2
639,588 + ABZR87_RS03050 0.21 -0.4
639,588 + ABZR87_RS03050 0.21 -1.6
639,588 + ABZR87_RS03050 0.21 +1.7
639,588 + ABZR87_RS03050 0.21 +0.8
639,588 + ABZR87_RS03050 0.21 +0.7
639,589 - ABZR87_RS03050 0.22 -1.4
639,589 - ABZR87_RS03050 0.22 +0.1
639,589 - ABZR87_RS03050 0.22 -0.7
639,589 - ABZR87_RS03050 0.22 -1.6
639,589 - ABZR87_RS03050 0.22 -0.6
639,630 + ABZR87_RS03050 0.24 +0.7
639,630 + ABZR87_RS03050 0.24 -0.6
639,630 + ABZR87_RS03050 0.24 -0.2
639,631 - ABZR87_RS03050 0.24 -0.9
639,631 - ABZR87_RS03050 0.24 -1.3
639,663 + ABZR87_RS03050 0.26 -2.0
639,663 + ABZR87_RS03050 0.26 -0.7
639,664 - ABZR87_RS03050 0.26 -0.7
639,664 - ABZR87_RS03050 0.26 -0.9
639,664 - ABZR87_RS03050 0.26 -3.0
639,664 - ABZR87_RS03050 0.26 +1.0
639,759 + ABZR87_RS03050 0.31 -1.8
639,792 + ABZR87_RS03050 0.33 -1.0
639,792 + ABZR87_RS03050 0.33 +0.1
639,792 + ABZR87_RS03050 0.33 +0.1
639,792 + ABZR87_RS03050 0.33 -1.2
639,792 + ABZR87_RS03050 0.33 +0.2
639,852 + ABZR87_RS03050 0.37 +0.4
639,852 + ABZR87_RS03050 0.37 -0.8
639,852 + ABZR87_RS03050 0.37 +1.6
639,853 - ABZR87_RS03050 0.37 -0.7
639,853 - ABZR87_RS03050 0.37 +0.5
639,853 - ABZR87_RS03050 0.37 -0.8
639,853 - ABZR87_RS03050 0.37 +0.9
639,853 - ABZR87_RS03050 0.37 -0.7
639,853 - ABZR87_RS03050 0.37 +0.3
639,891 + ABZR87_RS03050 0.39 +0.1
639,891 + ABZR87_RS03050 0.39 -1.6
639,892 - ABZR87_RS03050 0.39 -0.7
639,892 - ABZR87_RS03050 0.39 +0.8
639,892 - ABZR87_RS03050 0.39 -0.7
639,934 + ABZR87_RS03050 0.41 +1.2
639,935 - ABZR87_RS03050 0.41 -0.2

Or see this region's nucleotide sequence