Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03030 and ABZR87_RS03035 overlap by 4 nucleotides ABZR87_RS03035 and ABZR87_RS03040 overlap by 8 nucleotides ABZR87_RS03040 and ABZR87_RS03045 are separated by 22 nucleotides
ABZR87_RS03030: ABZR87_RS03030 - ABC transporter ATP-binding protein, at 635,926 to 637,023
_RS03030
ABZR87_RS03035: ABZR87_RS03035 - sugar ABC transporter permease, at 637,020 to 637,910
_RS03035
ABZR87_RS03040: ABZR87_RS03040 - carbohydrate ABC transporter permease, at 637,903 to 638,736
_RS03040
ABZR87_RS03045: ABZR87_RS03045 - DUF2160 domain-containing protein, at 638,759 to 639,040
_RS03045
Position (kb) 637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 636.037 kb on + strand, within ABZR87_RS03030 at 636.037 kb on + strand, within ABZR87_RS03030 at 636.037 kb on + strand, within ABZR87_RS03030 at 636.038 kb on - strand, within ABZR87_RS03030 at 636.038 kb on - strand, within ABZR87_RS03030 at 636.038 kb on - strand, within ABZR87_RS03030 at 636.038 kb on - strand, within ABZR87_RS03030 at 636.202 kb on + strand, within ABZR87_RS03030 at 636.202 kb on + strand, within ABZR87_RS03030 at 636.203 kb on - strand, within ABZR87_RS03030 at 636.203 kb on - strand, within ABZR87_RS03030 at 636.203 kb on - strand, within ABZR87_RS03030 at 636.203 kb on - strand, within ABZR87_RS03030 at 636.511 kb on + strand, within ABZR87_RS03030 at 636.511 kb on + strand, within ABZR87_RS03030 at 636.511 kb on + strand, within ABZR87_RS03030 at 636.511 kb on + strand, within ABZR87_RS03030 at 636.512 kb on - strand, within ABZR87_RS03030 at 636.512 kb on - strand, within ABZR87_RS03030 at 636.512 kb on - strand, within ABZR87_RS03030 at 636.512 kb on - strand, within ABZR87_RS03030 at 636.512 kb on - strand, within ABZR87_RS03030 at 636.512 kb on - strand, within ABZR87_RS03030 at 636.512 kb on - strand, within ABZR87_RS03030 at 636.627 kb on + strand, within ABZR87_RS03030 at 636.627 kb on + strand, within ABZR87_RS03030 at 636.627 kb on + strand, within ABZR87_RS03030 at 636.627 kb on + strand, within ABZR87_RS03030 at 636.627 kb on + strand, within ABZR87_RS03030 at 636.628 kb on - strand, within ABZR87_RS03030 at 636.640 kb on + strand, within ABZR87_RS03030 at 636.991 kb on + strand at 636.991 kb on + strand at 636.991 kb on + strand at 636.991 kb on + strand at 636.991 kb on + strand at 636.992 kb on - strand at 636.992 kb on - strand at 636.992 kb on - strand at 636.994 kb on + strand at 636.994 kb on + strand at 636.994 kb on + strand at 636.995 kb on - strand at 636.995 kb on - strand at 636.995 kb on - strand at 636.995 kb on - strand at 637.119 kb on + strand, within ABZR87_RS03035 at 637.120 kb on - strand, within ABZR87_RS03035 at 637.120 kb on - strand, within ABZR87_RS03035 at 637.443 kb on + strand, within ABZR87_RS03035 at 637.443 kb on + strand, within ABZR87_RS03035 at 637.444 kb on - strand, within ABZR87_RS03035 at 637.444 kb on - strand, within ABZR87_RS03035 at 637.444 kb on - strand, within ABZR87_RS03035 at 637.449 kb on + strand, within ABZR87_RS03035 at 637.449 kb on + strand, within ABZR87_RS03035 at 637.449 kb on + strand, within ABZR87_RS03035 at 637.450 kb on - strand, within ABZR87_RS03035 at 637.450 kb on - strand, within ABZR87_RS03035 at 637.450 kb on - strand, within ABZR87_RS03035 at 637.450 kb on - strand, within ABZR87_RS03035 at 637.450 kb on - strand, within ABZR87_RS03035 at 637.533 kb on + strand, within ABZR87_RS03035 at 637.533 kb on + strand, within ABZR87_RS03035 at 637.534 kb on - strand, within ABZR87_RS03035 at 637.534 kb on - strand, within ABZR87_RS03035 at 637.566 kb on + strand, within ABZR87_RS03035 at 637.566 kb on + strand, within ABZR87_RS03035 at 637.567 kb on - strand, within ABZR87_RS03035 at 637.567 kb on - strand, within ABZR87_RS03035 at 637.614 kb on + strand, within ABZR87_RS03035 at 637.615 kb on - strand, within ABZR87_RS03035 at 637.615 kb on - strand, within ABZR87_RS03035 at 637.615 kb on - strand, within ABZR87_RS03035 at 637.615 kb on - strand, within ABZR87_RS03035 at 637.689 kb on + strand, within ABZR87_RS03035 at 637.689 kb on + strand, within ABZR87_RS03035 at 637.689 kb on + strand, within ABZR87_RS03035 at 637.690 kb on - strand, within ABZR87_RS03035 at 637.815 kb on + strand, within ABZR87_RS03035 at 637.815 kb on + strand, within ABZR87_RS03035 at 637.815 kb on + strand, within ABZR87_RS03035 at 637.815 kb on + strand, within ABZR87_RS03035 at 637.815 kb on + strand, within ABZR87_RS03035 at 637.816 kb on - strand, within ABZR87_RS03035 at 637.816 kb on - strand, within ABZR87_RS03035 at 637.851 kb on + strand at 637.851 kb on + strand at 637.852 kb on - strand at 637.908 kb on + strand at 637.908 kb on + strand at 637.909 kb on - strand at 637.969 kb on + strand at 637.969 kb on + strand at 637.969 kb on + strand at 637.969 kb on + strand at 637.970 kb on - strand at 637.970 kb on - strand at 637.970 kb on - strand at 637.970 kb on - strand at 637.970 kb on - strand at 637.970 kb on - strand at 637.996 kb on + strand, within ABZR87_RS03040 at 637.997 kb on - strand, within ABZR87_RS03040 at 637.997 kb on - strand, within ABZR87_RS03040 at 638.083 kb on + strand, within ABZR87_RS03040 at 638.083 kb on + strand, within ABZR87_RS03040 at 638.083 kb on + strand, within ABZR87_RS03040 at 638.083 kb on + strand, within ABZR87_RS03040 at 638.084 kb on - strand, within ABZR87_RS03040 at 638.084 kb on - strand, within ABZR87_RS03040 at 638.084 kb on - strand, within ABZR87_RS03040 at 638.084 kb on - strand, within ABZR87_RS03040 at 638.084 kb on - strand, within ABZR87_RS03040 at 638.084 kb on - strand, within ABZR87_RS03040 at 638.113 kb on + strand, within ABZR87_RS03040 at 638.122 kb on + strand, within ABZR87_RS03040 at 638.123 kb on - strand, within ABZR87_RS03040 at 638.123 kb on - strand, within ABZR87_RS03040 at 638.123 kb on - strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.140 kb on + strand, within ABZR87_RS03040 at 638.141 kb on - strand, within ABZR87_RS03040 at 638.141 kb on - strand, within ABZR87_RS03040 at 638.141 kb on - strand, within ABZR87_RS03040 at 638.141 kb on - strand, within ABZR87_RS03040 at 638.141 kb on - strand, within ABZR87_RS03040 at 638.141 kb on - strand, within ABZR87_RS03040 at 638.191 kb on + strand, within ABZR87_RS03040 at 638.207 kb on - strand, within ABZR87_RS03040 at 638.300 kb on - strand, within ABZR87_RS03040 at 638.431 kb on + strand, within ABZR87_RS03040 at 638.431 kb on + strand, within ABZR87_RS03040 at 638.431 kb on + strand, within ABZR87_RS03040 at 638.444 kb on - strand, within ABZR87_RS03040 at 638.444 kb on - strand, within ABZR87_RS03040 at 638.529 kb on + strand, within ABZR87_RS03040 at 638.529 kb on + strand, within ABZR87_RS03040 at 638.529 kb on + strand, within ABZR87_RS03040 at 638.530 kb on - strand, within ABZR87_RS03040 at 638.530 kb on - strand, within ABZR87_RS03040 at 638.530 kb on - strand, within ABZR87_RS03040 at 638.530 kb on - strand, within ABZR87_RS03040 at 638.701 kb on + strand at 638.701 kb on + strand at 638.702 kb on - strand at 638.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 636,037 + ABZR87_RS03030 0.10 +0.9 636,037 + ABZR87_RS03030 0.10 +0.1 636,037 + ABZR87_RS03030 0.10 -1.1 636,038 - ABZR87_RS03030 0.10 +0.6 636,038 - ABZR87_RS03030 0.10 -1.6 636,038 - ABZR87_RS03030 0.10 -0.0 636,038 - ABZR87_RS03030 0.10 -0.9 636,202 + ABZR87_RS03030 0.25 -1.8 636,202 + ABZR87_RS03030 0.25 -1.1 636,203 - ABZR87_RS03030 0.25 -1.7 636,203 - ABZR87_RS03030 0.25 +0.5 636,203 - ABZR87_RS03030 0.25 +0.7 636,203 - ABZR87_RS03030 0.25 +1.1 636,511 + ABZR87_RS03030 0.53 -2.3 636,511 + ABZR87_RS03030 0.53 -1.0 636,511 + ABZR87_RS03030 0.53 +1.3 636,511 + ABZR87_RS03030 0.53 -2.3 636,512 - ABZR87_RS03030 0.53 -0.9 636,512 - ABZR87_RS03030 0.53 +0.0 636,512 - ABZR87_RS03030 0.53 +0.4 636,512 - ABZR87_RS03030 0.53 -2.8 636,512 - ABZR87_RS03030 0.53 +1.4 636,512 - ABZR87_RS03030 0.53 +0.1 636,512 - ABZR87_RS03030 0.53 -0.6 636,627 + ABZR87_RS03030 0.64 +1.6 636,627 + ABZR87_RS03030 0.64 -0.7 636,627 + ABZR87_RS03030 0.64 +0.9 636,627 + ABZR87_RS03030 0.64 -0.6 636,627 + ABZR87_RS03030 0.64 +0.1 636,628 - ABZR87_RS03030 0.64 +0.6 636,640 + ABZR87_RS03030 0.65 -1.5 636,991 + -2.9 636,991 + -1.0 636,991 + -0.6 636,991 + -1.2 636,991 + -1.2 636,992 - +0.6 636,992 - +1.0 636,992 - +0.3 636,994 + -0.7 636,994 + -1.7 636,994 + +1.1 636,995 - -1.0 636,995 - -1.2 636,995 - -0.4 636,995 - -0.4 637,119 + ABZR87_RS03035 0.11 -1.6 637,120 - ABZR87_RS03035 0.11 +0.2 637,120 - ABZR87_RS03035 0.11 +0.4 637,443 + ABZR87_RS03035 0.47 -0.9 637,443 + ABZR87_RS03035 0.47 +0.4 637,444 - ABZR87_RS03035 0.48 -1.2 637,444 - ABZR87_RS03035 0.48 -0.5 637,444 - ABZR87_RS03035 0.48 -0.6 637,449 + ABZR87_RS03035 0.48 +0.3 637,449 + ABZR87_RS03035 0.48 +0.8 637,449 + ABZR87_RS03035 0.48 +0.1 637,450 - ABZR87_RS03035 0.48 +0.0 637,450 - ABZR87_RS03035 0.48 -2.2 637,450 - ABZR87_RS03035 0.48 -0.5 637,450 - ABZR87_RS03035 0.48 +0.6 637,450 - ABZR87_RS03035 0.48 -0.3 637,533 + ABZR87_RS03035 0.58 +0.1 637,533 + ABZR87_RS03035 0.58 +0.2 637,534 - ABZR87_RS03035 0.58 -0.7 637,534 - ABZR87_RS03035 0.58 -0.7 637,566 + ABZR87_RS03035 0.61 +0.8 637,566 + ABZR87_RS03035 0.61 +3.1 637,567 - ABZR87_RS03035 0.61 -2.0 637,567 - ABZR87_RS03035 0.61 +0.9 637,614 + ABZR87_RS03035 0.67 +2.8 637,615 - ABZR87_RS03035 0.67 +0.2 637,615 - ABZR87_RS03035 0.67 -2.6 637,615 - ABZR87_RS03035 0.67 +1.2 637,615 - ABZR87_RS03035 0.67 -0.5 637,689 + ABZR87_RS03035 0.75 -0.4 637,689 + ABZR87_RS03035 0.75 -0.4 637,689 + ABZR87_RS03035 0.75 -1.6 637,690 - ABZR87_RS03035 0.75 +0.2 637,815 + ABZR87_RS03035 0.89 +1.3 637,815 + ABZR87_RS03035 0.89 +0.7 637,815 + ABZR87_RS03035 0.89 +1.1 637,815 + ABZR87_RS03035 0.89 +1.7 637,815 + ABZR87_RS03035 0.89 -0.6 637,816 - ABZR87_RS03035 0.89 +0.5 637,816 - ABZR87_RS03035 0.89 +3.6 637,851 + -1.3 637,851 + -1.3 637,852 - -0.5 637,908 + +0.5 637,908 + -1.0 637,909 - +0.4 637,969 + -0.1 637,969 + +0.3 637,969 + +0.3 637,969 + +2.4 637,970 - +0.6 637,970 - -1.3 637,970 - -1.4 637,970 - -0.9 637,970 - +0.7 637,970 - +0.5 637,996 + ABZR87_RS03040 0.11 -2.4 637,997 - ABZR87_RS03040 0.11 -0.9 637,997 - ABZR87_RS03040 0.11 +0.9 638,083 + ABZR87_RS03040 0.22 +0.9 638,083 + ABZR87_RS03040 0.22 -1.1 638,083 + ABZR87_RS03040 0.22 +0.3 638,083 + ABZR87_RS03040 0.22 -0.6 638,084 - ABZR87_RS03040 0.22 -0.2 638,084 - ABZR87_RS03040 0.22 -0.3 638,084 - ABZR87_RS03040 0.22 +0.5 638,084 - ABZR87_RS03040 0.22 -1.7 638,084 - ABZR87_RS03040 0.22 -0.9 638,084 - ABZR87_RS03040 0.22 +0.9 638,113 + ABZR87_RS03040 0.25 +0.8 638,122 + ABZR87_RS03040 0.26 -0.3 638,123 - ABZR87_RS03040 0.26 -2.8 638,123 - ABZR87_RS03040 0.26 +0.2 638,123 - ABZR87_RS03040 0.26 -0.3 638,140 + ABZR87_RS03040 0.28 +1.4 638,140 + ABZR87_RS03040 0.28 -0.8 638,140 + ABZR87_RS03040 0.28 -0.9 638,140 + ABZR87_RS03040 0.28 +0.2 638,140 + ABZR87_RS03040 0.28 -0.9 638,140 + ABZR87_RS03040 0.28 -0.6 638,140 + ABZR87_RS03040 0.28 +0.3 638,140 + ABZR87_RS03040 0.28 +0.0 638,140 + ABZR87_RS03040 0.28 -0.8 638,141 - ABZR87_RS03040 0.29 -0.6 638,141 - ABZR87_RS03040 0.29 -1.1 638,141 - ABZR87_RS03040 0.29 +0.3 638,141 - ABZR87_RS03040 0.29 -0.2 638,141 - ABZR87_RS03040 0.29 -1.8 638,141 - ABZR87_RS03040 0.29 -0.4 638,191 + ABZR87_RS03040 0.35 -0.4 638,207 - ABZR87_RS03040 0.36 -0.5 638,300 - ABZR87_RS03040 0.48 -2.2 638,431 + ABZR87_RS03040 0.63 +0.4 638,431 + ABZR87_RS03040 0.63 -0.6 638,431 + ABZR87_RS03040 0.63 -1.5 638,444 - ABZR87_RS03040 0.65 -0.7 638,444 - ABZR87_RS03040 0.65 +1.3 638,529 + ABZR87_RS03040 0.75 -0.5 638,529 + ABZR87_RS03040 0.75 -0.6 638,529 + ABZR87_RS03040 0.75 +0.1 638,530 - ABZR87_RS03040 0.75 -0.6 638,530 - ABZR87_RS03040 0.75 -0.4 638,530 - ABZR87_RS03040 0.75 -1.9 638,530 - ABZR87_RS03040 0.75 -0.9 638,701 + -1.6 638,701 + -0.2 638,702 - -1.5 638,702 - +0.3
Or see this region's nucleotide sequence