Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01545

Experiment: root sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01540 and ABZR87_RS01545 are separated by 57 nucleotidesABZR87_RS01545 and ABZR87_RS01550 are separated by 33 nucleotides ABZR87_RS01540: ABZR87_RS01540 - arabinose ABC transporter substrate-binding protein, at 324,024 to 325,028 _RS01540 ABZR87_RS01545: ABZR87_RS01545 - L-arabinose ABC transporter ATP-binding protein AraG, at 325,086 to 326,615 _RS01545 ABZR87_RS01550: ABZR87_RS01550 - L-arabinose ABC transporter permease AraH, at 326,649 to 327,659 _RS01550 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.544 kb on - strand, within ABZR87_RS01540at 325.140 kb on + strandat 325.140 kb on + strandat 325.140 kb on + strandat 325.141 kb on - strandat 325.383 kb on + strand, within ABZR87_RS01545at 325.383 kb on + strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.740 kb on + strand, within ABZR87_RS01545at 325.740 kb on + strand, within ABZR87_RS01545at 325.741 kb on - strand, within ABZR87_RS01545at 325.741 kb on - strand, within ABZR87_RS01545at 325.866 kb on + strand, within ABZR87_RS01545at 325.867 kb on - strand, within ABZR87_RS01545at 325.867 kb on - strand, within ABZR87_RS01545at 325.872 kb on + strand, within ABZR87_RS01545at 325.872 kb on + strand, within ABZR87_RS01545at 325.922 kb on - strand, within ABZR87_RS01545at 326.029 kb on - strand, within ABZR87_RS01545at 326.433 kb on + strand, within ABZR87_RS01545at 326.433 kb on + strand, within ABZR87_RS01545at 326.434 kb on - strand, within ABZR87_RS01545at 326.434 kb on - strand, within ABZR87_RS01545at 326.445 kb on + strand, within ABZR87_RS01545at 326.445 kb on + strand, within ABZR87_RS01545at 326.445 kb on + strand, within ABZR87_RS01545at 326.446 kb on - strand, within ABZR87_RS01545at 326.446 kb on - strand, within ABZR87_RS01545at 326.446 kb on - strand, within ABZR87_RS01545at 326.648 kb on + strandat 326.648 kb on + strandat 326.648 kb on + strandat 326.648 kb on + strandat 326.648 kb on + strandat 326.649 kb on - strandat 326.649 kb on - strandat 326.707 kb on + strandat 326.707 kb on + strandat 326.975 kb on + strand, within ABZR87_RS01550at 326.975 kb on + strand, within ABZR87_RS01550at 326.975 kb on + strand, within ABZR87_RS01550at 326.976 kb on - strand, within ABZR87_RS01550at 327.054 kb on + strand, within ABZR87_RS01550at 327.055 kb on - strand, within ABZR87_RS01550at 327.198 kb on + strand, within ABZR87_RS01550at 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.585 kb on + strandat 327.585 kb on + strandat 327.586 kb on - strandat 327.586 kb on - strandat 327.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB
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324,357 + ABZR87_RS01540 0.33 -0.5
324,357 + ABZR87_RS01540 0.33 +0.2
324,357 + ABZR87_RS01540 0.33 -0.1
324,357 + ABZR87_RS01540 0.33 +0.7
324,358 - ABZR87_RS01540 0.33 -2.4
324,358 - ABZR87_RS01540 0.33 +0.2
324,358 - ABZR87_RS01540 0.33 +0.9
324,358 - ABZR87_RS01540 0.33 +0.9
324,544 - ABZR87_RS01540 0.52 -1.3
325,140 + +0.4
325,140 + +0.7
325,140 + +0.6
325,141 - +0.4
325,383 + ABZR87_RS01545 0.19 +0.9
325,383 + ABZR87_RS01545 0.19 -0.5
325,384 - ABZR87_RS01545 0.19 -1.4
325,384 - ABZR87_RS01545 0.19 +0.4
325,384 - ABZR87_RS01545 0.19 +1.5
325,713 + ABZR87_RS01545 0.41 +1.0
325,713 + ABZR87_RS01545 0.41 -1.4
325,713 + ABZR87_RS01545 0.41 +0.0
325,713 + ABZR87_RS01545 0.41 +0.6
325,714 - ABZR87_RS01545 0.41 -1.2
325,714 - ABZR87_RS01545 0.41 +1.0
325,714 - ABZR87_RS01545 0.41 -0.6
325,740 + ABZR87_RS01545 0.43 -0.4
325,740 + ABZR87_RS01545 0.43 +0.6
325,741 - ABZR87_RS01545 0.43 -0.8
325,741 - ABZR87_RS01545 0.43 -0.8
325,866 + ABZR87_RS01545 0.51 +0.8
325,867 - ABZR87_RS01545 0.51 -1.1
325,867 - ABZR87_RS01545 0.51 -0.8
325,872 + ABZR87_RS01545 0.51 +1.3
325,872 + ABZR87_RS01545 0.51 -1.3
325,922 - ABZR87_RS01545 0.55 +0.5
326,029 - ABZR87_RS01545 0.62 +0.5
326,433 + ABZR87_RS01545 0.88 -0.1
326,433 + ABZR87_RS01545 0.88 -1.6
326,434 - ABZR87_RS01545 0.88 -1.4
326,434 - ABZR87_RS01545 0.88 -0.3
326,445 + ABZR87_RS01545 0.89 +0.0
326,445 + ABZR87_RS01545 0.89 +0.0
326,445 + ABZR87_RS01545 0.89 +0.0
326,446 - ABZR87_RS01545 0.89 +0.5
326,446 - ABZR87_RS01545 0.89 -0.9
326,446 - ABZR87_RS01545 0.89 +0.7
326,648 + -0.7
326,648 + -1.5
326,648 + -1.6
326,648 + -0.1
326,648 + +0.7
326,649 - -1.6
326,649 - +1.7
326,707 + +0.1
326,707 + +0.2
326,975 + ABZR87_RS01550 0.32 -0.9
326,975 + ABZR87_RS01550 0.32 -2.0
326,975 + ABZR87_RS01550 0.32 +1.0
326,976 - ABZR87_RS01550 0.32 -0.6
327,054 + ABZR87_RS01550 0.40 +0.7
327,055 - ABZR87_RS01550 0.40 +0.6
327,198 + ABZR87_RS01550 0.54 +0.0
327,579 + +0.9
327,579 + +0.7
327,579 + +0.5
327,579 + -1.0
327,579 + +2.0
327,579 + +2.9
327,579 + +0.4
327,579 + -0.5
327,579 + -0.4
327,579 + -0.8
327,579 + +0.4
327,579 + +0.8
327,580 - -0.4
327,580 - +0.0
327,580 - -0.0
327,580 - +0.1
327,580 - -1.2
327,580 - -0.4
327,585 + -1.2
327,585 + -3.1
327,586 - -0.5
327,586 - +0.1
327,586 - -1.0

Or see this region's nucleotide sequence