Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00615 and ABZR87_RS00620 are separated by 70 nucleotides ABZR87_RS00620 and ABZR87_RS00625 are separated by 167 nucleotides ABZR87_RS00625 and ABZR87_RS00630 are separated by 67 nucleotides
ABZR87_RS00615: ABZR87_RS00615 - glycine betaine ABC transporter substrate-binding protein, at 126,886 to 128,442
_RS00615
ABZR87_RS00620: ABZR87_RS00620 - sulfite exporter TauE/SafE family protein, at 128,513 to 129,280
_RS00620
ABZR87_RS00625: ABZR87_RS00625 - hypothetical protein, at 129,448 to 129,897
_RS00625
ABZR87_RS00630: ABZR87_RS00630 - GntP family permease, at 129,965 to 131,365
_RS00630
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.531 kb on + strand, within ABZR87_RS00615 at 127.532 kb on - strand, within ABZR87_RS00615 at 127.532 kb on - strand, within ABZR87_RS00615 at 127.532 kb on - strand, within ABZR87_RS00615 at 127.622 kb on - strand, within ABZR87_RS00615 at 127.848 kb on + strand, within ABZR87_RS00615 at 127.848 kb on + strand, within ABZR87_RS00615 at 127.848 kb on + strand, within ABZR87_RS00615 at 127.848 kb on + strand, within ABZR87_RS00615 at 127.849 kb on - strand, within ABZR87_RS00615 at 127.849 kb on - strand, within ABZR87_RS00615 at 127.875 kb on + strand, within ABZR87_RS00615 at 127.876 kb on - strand, within ABZR87_RS00615 at 128.010 kb on + strand, within ABZR87_RS00615 at 128.011 kb on - strand, within ABZR87_RS00615 at 128.011 kb on - strand, within ABZR87_RS00615 at 128.011 kb on - strand, within ABZR87_RS00615 at 128.065 kb on + strand, within ABZR87_RS00615 at 128.065 kb on + strand, within ABZR87_RS00615 at 128.066 kb on - strand, within ABZR87_RS00615 at 128.066 kb on - strand, within ABZR87_RS00615 at 128.247 kb on + strand, within ABZR87_RS00615 at 128.440 kb on + strand at 128.441 kb on - strand at 128.473 kb on + strand at 128.473 kb on + strand at 128.512 kb on + strand at 128.805 kb on + strand, within ABZR87_RS00620 at 128.806 kb on - strand, within ABZR87_RS00620 at 128.808 kb on + strand, within ABZR87_RS00620 at 128.808 kb on + strand, within ABZR87_RS00620 at 128.809 kb on - strand, within ABZR87_RS00620 at 128.852 kb on + strand, within ABZR87_RS00620 at 128.852 kb on + strand, within ABZR87_RS00620 at 128.853 kb on - strand, within ABZR87_RS00620 at 128.853 kb on - strand, within ABZR87_RS00620 at 128.981 kb on + strand, within ABZR87_RS00620 at 128.982 kb on - strand, within ABZR87_RS00620 at 129.339 kb on + strand at 129.339 kb on + strand at 129.340 kb on - strand at 129.365 kb on + strand at 129.366 kb on - strand at 129.366 kb on - strand at 129.631 kb on + strand, within ABZR87_RS00625 at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 130.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 127,531 + ABZR87_RS00615 0.41 -2.1 127,532 - ABZR87_RS00615 0.41 +1.0 127,532 - ABZR87_RS00615 0.41 -1.1 127,532 - ABZR87_RS00615 0.41 -0.3 127,622 - ABZR87_RS00615 0.47 +0.1 127,848 + ABZR87_RS00615 0.62 -0.2 127,848 + ABZR87_RS00615 0.62 +0.3 127,848 + ABZR87_RS00615 0.62 -1.4 127,848 + ABZR87_RS00615 0.62 +0.2 127,849 - ABZR87_RS00615 0.62 +1.0 127,849 - ABZR87_RS00615 0.62 -0.4 127,875 + ABZR87_RS00615 0.64 -1.2 127,876 - ABZR87_RS00615 0.64 +0.8 128,010 + ABZR87_RS00615 0.72 -0.1 128,011 - ABZR87_RS00615 0.72 +1.9 128,011 - ABZR87_RS00615 0.72 -1.1 128,011 - ABZR87_RS00615 0.72 -1.2 128,065 + ABZR87_RS00615 0.76 +1.4 128,065 + ABZR87_RS00615 0.76 -0.2 128,066 - ABZR87_RS00615 0.76 -2.0 128,066 - ABZR87_RS00615 0.76 -0.1 128,247 + ABZR87_RS00615 0.87 +0.6 128,440 + +0.1 128,441 - -0.4 128,473 + +1.8 128,473 + +0.4 128,512 + +2.1 128,805 + ABZR87_RS00620 0.38 -1.0 128,806 - ABZR87_RS00620 0.38 -1.5 128,808 + ABZR87_RS00620 0.38 +0.6 128,808 + ABZR87_RS00620 0.38 +0.9 128,809 - ABZR87_RS00620 0.39 -0.1 128,852 + ABZR87_RS00620 0.44 -1.1 128,852 + ABZR87_RS00620 0.44 +1.7 128,853 - ABZR87_RS00620 0.44 -0.5 128,853 - ABZR87_RS00620 0.44 +0.6 128,981 + ABZR87_RS00620 0.61 +0.1 128,982 - ABZR87_RS00620 0.61 +0.8 129,339 + -0.1 129,339 + -0.5 129,340 - +0.9 129,365 + -0.1 129,366 - -0.9 129,366 - +0.8 129,631 + ABZR87_RS00625 0.41 -0.2 129,984 + -0.2 129,984 + +0.4 129,984 + -0.9 129,984 + -1.4 129,984 + +0.1 129,984 + -0.2 129,985 - -1.2 129,985 - +1.6 129,985 - -0.6 129,985 - +1.3 129,985 - -1.4 129,985 - -0.4 129,985 - +1.4 130,050 + -0.8
Or see this region's nucleotide sequence