Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00195 and ABZR87_RS00200 are separated by 20 nucleotides ABZR87_RS00200 and ABZR87_RS00205 overlap by 4 nucleotides ABZR87_RS00205 and ABZR87_RS00210 are separated by 17 nucleotides
ABZR87_RS00195: ABZR87_RS00195 - sulfate adenylyltransferase subunit CysD, at 38,414 to 39,364
_RS00195
ABZR87_RS00200: ABZR87_RS00200 - phosphoadenylyl-sulfate reductase, at 39,385 to 40,212
_RS00200
ABZR87_RS00205: ABZR87_RS00205 - DUF934 domain-containing protein, at 40,209 to 40,754
_RS00205
ABZR87_RS00210: ABZR87_RS00210 - nitrite/sulfite reductase, at 40,772 to 42,433
_RS00210
Position (kb) 40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 39.279 kb on + strand at 39.279 kb on + strand at 39.279 kb on + strand at 39.280 kb on - strand at 39.280 kb on - strand at 39.280 kb on - strand at 39.546 kb on - strand, within ABZR87_RS00200 at 39.593 kb on + strand, within ABZR87_RS00200 at 39.635 kb on + strand, within ABZR87_RS00200 at 39.635 kb on + strand, within ABZR87_RS00200 at 39.806 kb on + strand, within ABZR87_RS00200 at 39.836 kb on + strand, within ABZR87_RS00200 at 39.836 kb on + strand, within ABZR87_RS00200 at 39.887 kb on + strand, within ABZR87_RS00200 at 40.131 kb on - strand at 40.131 kb on - strand at 40.131 kb on - strand at 40.276 kb on + strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.552 kb on - strand, within ABZR87_RS00205 at 40.830 kb on + strand at 40.830 kb on + strand at 40.830 kb on + strand at 40.831 kb on - strand at 40.872 kb on + strand at 41.005 kb on + strand, within ABZR87_RS00210 at 41.006 kb on - strand, within ABZR87_RS00210 at 41.514 kb on + strand, within ABZR87_RS00210 at 41.697 kb on + strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.698 kb on - strand, within ABZR87_RS00210 at 41.727 kb on + strand, within ABZR87_RS00210 at 41.727 kb on + strand, within ABZR87_RS00210 at 41.751 kb on + strand, within ABZR87_RS00210 at 41.751 kb on + strand, within ABZR87_RS00210 at 41.752 kb on - strand, within ABZR87_RS00210
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 39,279 + -1.9 39,279 + -0.2 39,279 + -1.1 39,280 - -0.2 39,280 - -0.4 39,280 - -2.2 39,546 - ABZR87_RS00200 0.19 +1.1 39,593 + ABZR87_RS00200 0.25 -1.0 39,635 + ABZR87_RS00200 0.30 -3.2 39,635 + ABZR87_RS00200 0.30 +1.1 39,806 + ABZR87_RS00200 0.51 -1.6 39,836 + ABZR87_RS00200 0.54 +1.0 39,836 + ABZR87_RS00200 0.54 -0.2 39,887 + ABZR87_RS00200 0.61 -1.0 40,131 - -3.0 40,131 - +0.8 40,131 - +3.0 40,276 + ABZR87_RS00205 0.12 -0.7 40,552 - ABZR87_RS00205 0.63 -1.2 40,552 - ABZR87_RS00205 0.63 -0.9 40,552 - ABZR87_RS00205 0.63 -2.0 40,830 + -1.2 40,830 + -2.3 40,830 + +0.5 40,831 - +0.5 40,872 + -0.6 41,005 + ABZR87_RS00210 0.14 -1.3 41,006 - ABZR87_RS00210 0.14 +0.6 41,514 + ABZR87_RS00210 0.45 -1.8 41,697 + ABZR87_RS00210 0.56 +0.2 41,698 - ABZR87_RS00210 0.56 -2.0 41,698 - ABZR87_RS00210 0.56 -0.6 41,698 - ABZR87_RS00210 0.56 -1.9 41,727 + ABZR87_RS00210 0.57 -0.3 41,727 + ABZR87_RS00210 0.57 -0.2 41,751 + ABZR87_RS00210 0.59 -0.9 41,751 + ABZR87_RS00210 0.59 +0.1 41,752 - ABZR87_RS00210 0.59 +0.2
Or see this region's nucleotide sequence