Experiment: root sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00080 and ABZR87_RS00085 overlap by 11 nucleotides ABZR87_RS00085 and ABZR87_RS00090 overlap by 4 nucleotides ABZR87_RS00090 and ABZR87_RS00095 overlap by 4 nucleotides
ABZR87_RS00080: ABZR87_RS00080 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 17,391 to 18,011
_RS00080
ABZR87_RS00085: ABZR87_RS00085 - ABC transporter ATP-binding protein, at 18,001 to 18,840
_RS00085
ABZR87_RS00090: ABZR87_RS00090 - iron ABC transporter permease, at 18,837 to 19,856
_RS00090
ABZR87_RS00095: ABZR87_RS00095 - TonB-dependent receptor, at 19,853 to 21,742
_RS00095
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.501 kb on - strand, within ABZR87_RS00085 at 18.862 kb on + strand at 18.862 kb on + strand at 18.862 kb on + strand at 18.863 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.933 kb on - strand at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.250 kb on - strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.918 kb on - strand at 19.918 kb on - strand at 19.918 kb on - strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.935 kb on + strand at 19.935 kb on + strand at 19.936 kb on - strand at 20.023 kb on - strand at 20.185 kb on + strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.211 kb on + strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.227 kb on - strand, within ABZR87_RS00095 at 20.277 kb on + strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.322 kb on + strand, within ABZR87_RS00095 at 20.322 kb on + strand, within ABZR87_RS00095 at 20.323 kb on - strand, within ABZR87_RS00095 at 20.370 kb on + strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.530 kb on - strand, within ABZR87_RS00095 at 20.532 kb on + strand, within ABZR87_RS00095 at 20.532 kb on + strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.614 kb on - strand, within ABZR87_RS00095 at 20.622 kb on + strand, within ABZR87_RS00095 at 20.623 kb on - strand, within ABZR87_RS00095 at 20.644 kb on + strand, within ABZR87_RS00095 at 20.644 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 5; outgrowth in LB remove 18,500 + ABZR87_RS00085 0.59 -0.7 18,500 + ABZR87_RS00085 0.59 +0.1 18,500 + ABZR87_RS00085 0.59 +0.4 18,500 + ABZR87_RS00085 0.59 +0.1 18,501 - ABZR87_RS00085 0.60 +1.7 18,862 + +0.1 18,862 + +0.8 18,862 + +0.3 18,863 - +1.2 18,894 - -0.2 18,894 - -0.7 18,894 - -1.3 18,894 - +0.3 18,933 - +0.1 19,112 - ABZR87_RS00090 0.27 +1.1 19,112 - ABZR87_RS00090 0.27 +0.4 19,112 - ABZR87_RS00090 0.27 +0.4 19,112 - ABZR87_RS00090 0.27 -0.4 19,112 - ABZR87_RS00090 0.27 +0.1 19,250 - ABZR87_RS00090 0.40 +1.5 19,561 + ABZR87_RS00090 0.71 -1.4 19,561 + ABZR87_RS00090 0.71 -1.1 19,561 + ABZR87_RS00090 0.71 +0.5 19,561 + ABZR87_RS00090 0.71 -0.3 19,561 + ABZR87_RS00090 0.71 +0.1 19,561 + ABZR87_RS00090 0.71 -1.9 19,917 + -0.2 19,917 + -1.2 19,917 + -0.0 19,918 - +1.0 19,918 - -0.6 19,918 - -2.0 19,923 + +0.7 19,923 + -0.0 19,923 + +0.1 19,923 + -0.2 19,935 + +1.5 19,935 + -1.2 19,936 - -1.5 20,023 - -1.1 20,185 + ABZR87_RS00095 0.18 -0.7 20,186 - ABZR87_RS00095 0.18 -1.4 20,186 - ABZR87_RS00095 0.18 -1.6 20,186 - ABZR87_RS00095 0.18 -0.7 20,211 + ABZR87_RS00095 0.19 +0.5 20,212 - ABZR87_RS00095 0.19 -0.9 20,212 - ABZR87_RS00095 0.19 +1.2 20,212 - ABZR87_RS00095 0.19 +0.3 20,227 - ABZR87_RS00095 0.20 -1.0 20,277 + ABZR87_RS00095 0.22 -0.6 20,278 - ABZR87_RS00095 0.22 -0.3 20,278 - ABZR87_RS00095 0.22 -0.5 20,278 - ABZR87_RS00095 0.22 +1.1 20,322 + ABZR87_RS00095 0.25 +1.1 20,322 + ABZR87_RS00095 0.25 -1.1 20,323 - ABZR87_RS00095 0.25 -1.2 20,370 + ABZR87_RS00095 0.27 +0.9 20,371 - ABZR87_RS00095 0.27 +1.3 20,371 - ABZR87_RS00095 0.27 +1.5 20,371 - ABZR87_RS00095 0.27 -1.0 20,439 + ABZR87_RS00095 0.31 +0.6 20,439 + ABZR87_RS00095 0.31 -1.6 20,439 + ABZR87_RS00095 0.31 -0.2 20,440 - ABZR87_RS00095 0.31 +0.9 20,440 - ABZR87_RS00095 0.31 -0.5 20,440 - ABZR87_RS00095 0.31 -1.2 20,440 - ABZR87_RS00095 0.31 +1.1 20,440 - ABZR87_RS00095 0.31 -1.0 20,440 - ABZR87_RS00095 0.31 +1.2 20,440 - ABZR87_RS00095 0.31 -0.2 20,440 - ABZR87_RS00095 0.31 +0.5 20,530 - ABZR87_RS00095 0.36 +0.7 20,532 + ABZR87_RS00095 0.36 +0.5 20,532 + ABZR87_RS00095 0.36 -1.6 20,533 - ABZR87_RS00095 0.36 +0.6 20,533 - ABZR87_RS00095 0.36 -1.2 20,533 - ABZR87_RS00095 0.36 -0.4 20,533 - ABZR87_RS00095 0.36 -0.5 20,533 - ABZR87_RS00095 0.36 -1.0 20,533 - ABZR87_RS00095 0.36 -1.4 20,614 - ABZR87_RS00095 0.40 -0.3 20,622 + ABZR87_RS00095 0.41 +0.2 20,623 - ABZR87_RS00095 0.41 -1.4 20,644 + ABZR87_RS00095 0.42 -1.5 20,644 + ABZR87_RS00095 0.42 +1.5 20,655 + ABZR87_RS00095 0.42 +0.3 20,655 + ABZR87_RS00095 0.42 -2.1 20,655 + ABZR87_RS00095 0.42 -0.9 20,656 - ABZR87_RS00095 0.42 -2.3 20,656 - ABZR87_RS00095 0.42 -0.8 20,656 - ABZR87_RS00095 0.42 +0.1 20,656 - ABZR87_RS00095 0.42 -2.5 20,656 - ABZR87_RS00095 0.42 -1.1 20,656 - ABZR87_RS00095 0.42 -0.8 20,656 - ABZR87_RS00095 0.42 +1.3
Or see this region's nucleotide sequence