Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0178

Experiment: BG11

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0176 and Synpcc7942_0177 overlap by 4 nucleotidesSynpcc7942_0177 and Synpcc7942_0178 overlap by 4 nucleotidesSynpcc7942_0178 and Synpcc7942_0179 are separated by 270 nucleotides Synpcc7942_0176: Synpcc7942_0176 - hypothetical protein, at 174,311 to 174,712 _0176 Synpcc7942_0177: Synpcc7942_0177 - ABC-type uncharacterized transport system permease component-like, at 174,709 to 175,497 _0177 Synpcc7942_0178: Synpcc7942_0178 - ATPase, at 175,494 to 176,471 _0178 Synpcc7942_0179: Synpcc7942_0179 - Secretion chaperone CsaA, at 176,742 to 177,095 _0179 Position (kb) 175 176 177Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 174.521 kb on + strand, within Synpcc7942_0176at 174.533 kb on - strand, within Synpcc7942_0176at 174.540 kb on + strand, within Synpcc7942_0176at 174.554 kb on + strand, within Synpcc7942_0176at 174.556 kb on - strand, within Synpcc7942_0176at 174.575 kb on + strand, within Synpcc7942_0176at 174.625 kb on + strand, within Synpcc7942_0176at 174.626 kb on + strand, within Synpcc7942_0176at 174.637 kb on + strand, within Synpcc7942_0176at 174.664 kb on - strand, within Synpcc7942_0176at 174.666 kb on + strand, within Synpcc7942_0176at 174.666 kb on + strand, within Synpcc7942_0176at 174.671 kb on + strandat 174.671 kb on + strand, within Synpcc7942_0176at 174.679 kb on - strandat 174.679 kb on - strandat 174.730 kb on - strandat 174.767 kb on + strandat 174.788 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.832 kb on - strand, within Synpcc7942_0177at 174.832 kb on - strand, within Synpcc7942_0177at 174.860 kb on + strand, within Synpcc7942_0177at 174.873 kb on - strand, within Synpcc7942_0177at 174.903 kb on - strand, within Synpcc7942_0177at 174.910 kb on + strand, within Synpcc7942_0177at 174.916 kb on + strand, within Synpcc7942_0177at 174.944 kb on + strand, within Synpcc7942_0177at 174.956 kb on + strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.966 kb on + strand, within Synpcc7942_0177at 174.974 kb on + strand, within Synpcc7942_0177at 174.982 kb on - strand, within Synpcc7942_0177at 175.005 kb on + strand, within Synpcc7942_0177at 175.005 kb on + strand, within Synpcc7942_0177at 175.020 kb on + strand, within Synpcc7942_0177at 175.035 kb on + strand, within Synpcc7942_0177at 175.093 kb on + strand, within Synpcc7942_0177at 175.093 kb on + strand, within Synpcc7942_0177at 175.109 kb on - strand, within Synpcc7942_0177at 175.125 kb on + strand, within Synpcc7942_0177at 175.127 kb on + strand, within Synpcc7942_0177at 175.127 kb on + strand, within Synpcc7942_0177at 175.135 kb on - strand, within Synpcc7942_0177at 175.208 kb on + strand, within Synpcc7942_0177at 175.234 kb on + strand, within Synpcc7942_0177at 175.273 kb on + strand, within Synpcc7942_0177at 175.284 kb on + strand, within Synpcc7942_0177at 175.292 kb on - strand, within Synpcc7942_0177at 175.317 kb on + strand, within Synpcc7942_0177at 175.346 kb on - strand, within Synpcc7942_0177at 175.346 kb on - strand, within Synpcc7942_0177at 175.362 kb on + strand, within Synpcc7942_0177at 175.365 kb on + strandat 175.370 kb on - strand, within Synpcc7942_0177at 175.397 kb on + strand, within Synpcc7942_0177at 175.415 kb on - strand, within Synpcc7942_0177at 175.432 kb on + strandat 175.457 kb on + strandat 175.465 kb on - strandat 175.465 kb on - strandat 175.465 kb on - strandat 175.467 kb on + strandat 175.475 kb on - strandat 175.489 kb on - strandat 175.500 kb on - strandat 175.505 kb on + strandat 175.535 kb on - strandat 175.549 kb on + strandat 175.557 kb on - strandat 175.582 kb on + strandat 175.598 kb on + strand, within Synpcc7942_0178at 175.653 kb on + strand, within Synpcc7942_0178at 175.664 kb on + strand, within Synpcc7942_0178at 175.691 kb on + strand, within Synpcc7942_0178at 175.709 kb on - strand, within Synpcc7942_0178at 175.710 kb on + strand, within Synpcc7942_0178at 175.730 kb on + strand, within Synpcc7942_0178at 175.737 kb on + strand, within Synpcc7942_0178at 175.757 kb on + strand, within Synpcc7942_0178at 175.778 kb on - strand, within Synpcc7942_0178at 175.793 kb on - strand, within Synpcc7942_0178at 175.800 kb on - strand, within Synpcc7942_0178at 175.812 kb on - strand, within Synpcc7942_0178at 175.825 kb on + strand, within Synpcc7942_0178at 175.825 kb on + strand, within Synpcc7942_0178at 175.833 kb on - strand, within Synpcc7942_0178at 175.857 kb on + strand, within Synpcc7942_0178at 175.913 kb on + strand, within Synpcc7942_0178at 175.924 kb on + strand, within Synpcc7942_0178at 175.925 kb on + strand, within Synpcc7942_0178at 175.925 kb on + strand, within Synpcc7942_0178at 175.933 kb on - strand, within Synpcc7942_0178at 175.933 kb on - strand, within Synpcc7942_0178at 175.949 kb on + strand, within Synpcc7942_0178at 175.977 kb on + strand, within Synpcc7942_0178at 175.987 kb on - strand, within Synpcc7942_0178at 175.992 kb on - strand, within Synpcc7942_0178at 176.009 kb on - strand, within Synpcc7942_0178at 176.050 kb on + strand, within Synpcc7942_0178at 176.097 kb on + strand, within Synpcc7942_0178at 176.105 kb on - strand, within Synpcc7942_0178at 176.110 kb on + strand, within Synpcc7942_0178at 176.126 kb on + strand, within Synpcc7942_0178at 176.127 kb on + strand, within Synpcc7942_0178at 176.127 kb on + strand, within Synpcc7942_0178at 176.134 kb on - strand, within Synpcc7942_0178at 176.134 kb on - strand, within Synpcc7942_0178at 176.135 kb on - strand, within Synpcc7942_0178at 176.135 kb on - strand, within Synpcc7942_0178at 176.198 kb on - strand, within Synpcc7942_0178at 176.216 kb on + strand, within Synpcc7942_0178at 176.221 kb on + strand, within Synpcc7942_0178at 176.251 kb on + strand, within Synpcc7942_0178at 176.255 kb on + strand, within Synpcc7942_0178at 176.264 kb on - strand, within Synpcc7942_0178at 176.264 kb on - strand, within Synpcc7942_0178at 176.340 kb on - strand, within Synpcc7942_0178at 176.362 kb on + strand, within Synpcc7942_0178at 176.423 kb on - strandat 176.427 kb on - strandat 176.437 kb on + strandat 176.443 kb on + strandat 176.444 kb on - strandat 176.445 kb on - strandat 176.445 kb on - strandat 176.451 kb on - strandat 176.504 kb on + strandat 176.504 kb on + strandat 176.504 kb on + strandat 176.504 kb on + strandat 176.504 kb on + strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.520 kb on - strandat 176.531 kb on + strandat 176.531 kb on + strandat 176.531 kb on + strandat 176.531 kb on + strandat 176.531 kb on + strandat 176.539 kb on - strandat 176.539 kb on - strandat 176.539 kb on - strandat 176.558 kb on - strandat 176.608 kb on + strandat 176.623 kb on - strandat 176.627 kb on + strandat 176.628 kb on - strandat 176.628 kb on - strandat 176.630 kb on - strandat 176.798 kb on - strand, within Synpcc7942_0179at 176.803 kb on - strand, within Synpcc7942_0179at 176.845 kb on + strand, within Synpcc7942_0179at 176.853 kb on - strand, within Synpcc7942_0179at 176.859 kb on - strand, within Synpcc7942_0179at 176.929 kb on - strand, within Synpcc7942_0179at 176.929 kb on - strand, within Synpcc7942_0179at 176.942 kb on - strand, within Synpcc7942_0179at 176.953 kb on + strand, within Synpcc7942_0179at 176.953 kb on + strand, within Synpcc7942_0179at 177.063 kb on - strandat 177.072 kb on - strandat 177.316 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BG11
remove
174,521 + Synpcc7942_0176 0.52 +0.8
174,533 - Synpcc7942_0176 0.55 +0.7
174,540 + Synpcc7942_0176 0.57 -1.1
174,554 + Synpcc7942_0176 0.60 +2.5
174,556 - Synpcc7942_0176 0.61 +0.9
174,575 + Synpcc7942_0176 0.66 -0.1
174,625 + Synpcc7942_0176 0.78 +0.7
174,626 + Synpcc7942_0176 0.78 -0.1
174,637 + Synpcc7942_0176 0.81 -0.9
174,664 - Synpcc7942_0176 0.88 +0.2
174,666 + Synpcc7942_0176 0.88 -0.1
174,666 + Synpcc7942_0176 0.88 -0.1
174,671 + -0.1
174,671 + Synpcc7942_0176 0.90 -0.1
174,679 - +0.3
174,679 - -1.1
174,730 - +0.3
174,767 + +2.4
174,788 - Synpcc7942_0177 0.10 +0.8
174,812 - Synpcc7942_0177 0.13 +0.7
174,812 - Synpcc7942_0177 0.13 +1.5
174,812 - Synpcc7942_0177 0.13 +1.1
174,832 - Synpcc7942_0177 0.16 +0.9
174,832 - Synpcc7942_0177 0.16 +0.5
174,860 + Synpcc7942_0177 0.19 -1.1
174,873 - Synpcc7942_0177 0.21 +0.8
174,903 - Synpcc7942_0177 0.25 -0.1
174,910 + Synpcc7942_0177 0.25 +1.6
174,916 + Synpcc7942_0177 0.26 +2.2
174,944 + Synpcc7942_0177 0.30 -1.1
174,956 + Synpcc7942_0177 0.31 +0.1
174,964 - Synpcc7942_0177 0.32 +1.9
174,964 - Synpcc7942_0177 0.32 -0.1
174,964 - Synpcc7942_0177 0.32 -0.1
174,966 + Synpcc7942_0177 0.33 +1.8
174,974 + Synpcc7942_0177 0.34 +1.3
174,982 - Synpcc7942_0177 0.35 +1.4
175,005 + Synpcc7942_0177 0.38 +1.4
175,005 + Synpcc7942_0177 0.38 +1.1
175,020 + Synpcc7942_0177 0.39 +0.6
175,035 + Synpcc7942_0177 0.41 +1.9
175,093 + Synpcc7942_0177 0.49 +0.9
175,093 + Synpcc7942_0177 0.49 -0.1
175,109 - Synpcc7942_0177 0.51 +2.9
175,125 + Synpcc7942_0177 0.53 +1.5
175,127 + Synpcc7942_0177 0.53 +1.8
175,127 + Synpcc7942_0177 0.53 +2.4
175,135 - Synpcc7942_0177 0.54 +1.7
175,208 + Synpcc7942_0177 0.63 +1.3
175,234 + Synpcc7942_0177 0.67 -0.7
175,273 + Synpcc7942_0177 0.71 -0.4
175,284 + Synpcc7942_0177 0.73 -0.1
175,292 - Synpcc7942_0177 0.74 -0.5
175,317 + Synpcc7942_0177 0.77 +1.8
175,346 - Synpcc7942_0177 0.81 +1.5
175,346 - Synpcc7942_0177 0.81 -1.7
175,362 + Synpcc7942_0177 0.83 +1.0
175,365 + -0.1
175,370 - Synpcc7942_0177 0.84 -0.1
175,397 + Synpcc7942_0177 0.87 +1.1
175,415 - Synpcc7942_0177 0.89 +0.7
175,432 + +1.2
175,457 + +0.4
175,465 - +0.9
175,465 - +1.9
175,465 - +1.2
175,467 + +1.1
175,475 - +2.5
175,489 - +1.9
175,500 - +1.8
175,505 + +2.2
175,535 - +1.9
175,549 + +2.5
175,557 - -0.1
175,582 + +0.8
175,598 + Synpcc7942_0178 0.11 +0.6
175,653 + Synpcc7942_0178 0.16 +1.4
175,664 + Synpcc7942_0178 0.17 +1.1
175,691 + Synpcc7942_0178 0.20 -0.8
175,709 - Synpcc7942_0178 0.22 +1.5
175,710 + Synpcc7942_0178 0.22 -1.7
175,730 + Synpcc7942_0178 0.24 +2.3
175,737 + Synpcc7942_0178 0.25 +0.3
175,757 + Synpcc7942_0178 0.27 +1.5
175,778 - Synpcc7942_0178 0.29 +2.0
175,793 - Synpcc7942_0178 0.31 +2.3
175,800 - Synpcc7942_0178 0.31 +1.9
175,812 - Synpcc7942_0178 0.33 +1.3
175,825 + Synpcc7942_0178 0.34 +1.9
175,825 + Synpcc7942_0178 0.34 -1.1
175,833 - Synpcc7942_0178 0.35 +1.3
175,857 + Synpcc7942_0178 0.37 +1.3
175,913 + Synpcc7942_0178 0.43 -1.1
175,924 + Synpcc7942_0178 0.44 +1.5
175,925 + Synpcc7942_0178 0.44 +0.4
175,925 + Synpcc7942_0178 0.44 +1.2
175,933 - Synpcc7942_0178 0.45 -0.3
175,933 - Synpcc7942_0178 0.45 +0.9
175,949 + Synpcc7942_0178 0.47 +1.5
175,977 + Synpcc7942_0178 0.49 +1.3
175,987 - Synpcc7942_0178 0.50 +2.7
175,992 - Synpcc7942_0178 0.51 +2.0
176,009 - Synpcc7942_0178 0.53 +2.1
176,050 + Synpcc7942_0178 0.57 +1.5
176,097 + Synpcc7942_0178 0.62 +1.5
176,105 - Synpcc7942_0178 0.62 +2.5
176,110 + Synpcc7942_0178 0.63 -1.7
176,126 + Synpcc7942_0178 0.65 -0.7
176,127 + Synpcc7942_0178 0.65 -1.1
176,127 + Synpcc7942_0178 0.65 -0.1
176,134 - Synpcc7942_0178 0.65 +2.7
176,134 - Synpcc7942_0178 0.65 +0.9
176,135 - Synpcc7942_0178 0.66 +2.5
176,135 - Synpcc7942_0178 0.66 +0.6
176,198 - Synpcc7942_0178 0.72 +1.8
176,216 + Synpcc7942_0178 0.74 -0.4
176,221 + Synpcc7942_0178 0.74 -0.1
176,251 + Synpcc7942_0178 0.77 -0.1
176,255 + Synpcc7942_0178 0.78 +1.5
176,264 - Synpcc7942_0178 0.79 +0.7
176,264 - Synpcc7942_0178 0.79 +2.0
176,340 - Synpcc7942_0178 0.87 +4.9
176,362 + Synpcc7942_0178 0.89 +2.3
176,423 - +1.4
176,427 - +1.1
176,437 + -0.8
176,443 + +1.8
176,444 - -1.1
176,445 - -0.5
176,445 - +1.9
176,451 - +0.9
176,504 + +0.9
176,504 + +1.9
176,504 + +3.4
176,504 + +2.9
176,504 + -0.5
176,512 - +0.1
176,512 - +1.5
176,512 - -0.1
176,512 - +1.3
176,512 - +0.5
176,512 - +0.9
176,520 - +1.9
176,531 + -1.2
176,531 + +0.9
176,531 + -0.1
176,531 + +0.9
176,531 + -0.1
176,539 - -0.1
176,539 - +1.8
176,539 - -1.1
176,558 - +2.1
176,608 + +0.9
176,623 - +0.9
176,627 + -1.1
176,628 - -0.7
176,628 - +1.5
176,630 - -0.1
176,798 - Synpcc7942_0179 0.16 +1.2
176,803 - Synpcc7942_0179 0.17 +0.7
176,845 + Synpcc7942_0179 0.29 +1.4
176,853 - Synpcc7942_0179 0.31 +0.9
176,859 - Synpcc7942_0179 0.33 -0.2
176,929 - Synpcc7942_0179 0.53 +2.2
176,929 - Synpcc7942_0179 0.53 +0.7
176,942 - Synpcc7942_0179 0.56 +2.2
176,953 + Synpcc7942_0179 0.60 -1.1
176,953 + Synpcc7942_0179 0.60 -0.3
177,063 - -1.1
177,072 - +2.9
177,316 + +1.0

Or see this region's nucleotide sequence