Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5629

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5628 and Pf1N1B4_5629 are separated by 14 nucleotidesPf1N1B4_5629 and Pf1N1B4_5630 are separated by 20 nucleotidesPf1N1B4_5630 and Pf1N1B4_5631 are separated by 15 nucleotides Pf1N1B4_5628 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 55,321 to 56,343 _5628 Pf1N1B4_5629 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 56,358 to 57,932 _5629 Pf1N1B4_5630 - hypothetical protein, at 57,953 to 58,084 _5630 Pf1N1B4_5631 - Sigma-54 dependent transcriptional regulator, at 58,100 to 59,515 _5631 Position (kb) 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 55.400 kb on + strandat 55.486 kb on + strand, within Pf1N1B4_5628at 55.487 kb on - strand, within Pf1N1B4_5628at 55.564 kb on + strand, within Pf1N1B4_5628at 55.584 kb on + strand, within Pf1N1B4_5628at 55.643 kb on - strand, within Pf1N1B4_5628at 55.892 kb on - strand, within Pf1N1B4_5628at 56.023 kb on + strand, within Pf1N1B4_5628at 56.024 kb on - strand, within Pf1N1B4_5628at 56.024 kb on - strand, within Pf1N1B4_5628at 56.024 kb on - strand, within Pf1N1B4_5628at 56.765 kb on - strand, within Pf1N1B4_5629at 57.096 kb on + strand, within Pf1N1B4_5629at 57.096 kb on + strand, within Pf1N1B4_5629at 57.097 kb on - strand, within Pf1N1B4_5629at 57.098 kb on + strand, within Pf1N1B4_5629at 57.099 kb on - strand, within Pf1N1B4_5629at 57.099 kb on - strand, within Pf1N1B4_5629at 57.099 kb on - strand, within Pf1N1B4_5629at 57.106 kb on + strand, within Pf1N1B4_5629at 57.107 kb on - strand, within Pf1N1B4_5629at 57.110 kb on - strand, within Pf1N1B4_5629at 57.229 kb on - strand, within Pf1N1B4_5629at 57.512 kb on + strand, within Pf1N1B4_5629at 57.769 kb on - strand, within Pf1N1B4_5629at 57.894 kb on + strandat 58.002 kb on - strand, within Pf1N1B4_5630at 58.078 kb on + strandat 58.078 kb on + strandat 58.079 kb on - strandat 58.082 kb on + strandat 58.082 kb on + strandat 58.083 kb on - strandat 58.083 kb on - strandat 58.083 kb on - strandat 58.142 kb on - strandat 58.557 kb on - strand, within Pf1N1B4_5631at 58.557 kb on - strand, within Pf1N1B4_5631at 58.557 kb on - strand, within Pf1N1B4_5631at 58.732 kb on - strand, within Pf1N1B4_5631at 58.732 kb on - strand, within Pf1N1B4_5631at 58.732 kb on - strand, within Pf1N1B4_5631

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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55,400 + +0.7
55,486 + Pf1N1B4_5628 0.16 -1.3
55,487 - Pf1N1B4_5628 0.16 -1.1
55,564 + Pf1N1B4_5628 0.24 -0.8
55,584 + Pf1N1B4_5628 0.26 +1.1
55,643 - Pf1N1B4_5628 0.31 -2.6
55,892 - Pf1N1B4_5628 0.56 -1.6
56,023 + Pf1N1B4_5628 0.69 +0.0
56,024 - Pf1N1B4_5628 0.69 +0.7
56,024 - Pf1N1B4_5628 0.69 -0.9
56,024 - Pf1N1B4_5628 0.69 +0.2
56,765 - Pf1N1B4_5629 0.26 -1.2
57,096 + Pf1N1B4_5629 0.47 -0.8
57,096 + Pf1N1B4_5629 0.47 -2.3
57,097 - Pf1N1B4_5629 0.47 +1.1
57,098 + Pf1N1B4_5629 0.47 -3.1
57,099 - Pf1N1B4_5629 0.47 +0.2
57,099 - Pf1N1B4_5629 0.47 +2.3
57,099 - Pf1N1B4_5629 0.47 -1.1
57,106 + Pf1N1B4_5629 0.47 -1.1
57,107 - Pf1N1B4_5629 0.48 -2.7
57,110 - Pf1N1B4_5629 0.48 -0.7
57,229 - Pf1N1B4_5629 0.55 -1.4
57,512 + Pf1N1B4_5629 0.73 -1.8
57,769 - Pf1N1B4_5629 0.90 -0.5
57,894 + -0.1
58,002 - Pf1N1B4_5630 0.37 +1.0
58,078 + -1.1
58,078 + -1.8
58,079 - -0.4
58,082 + -0.6
58,082 + -0.3
58,083 - +0.7
58,083 - +0.3
58,083 - -0.8
58,142 - +0.4
58,557 - Pf1N1B4_5631 0.32 +1.0
58,557 - Pf1N1B4_5631 0.32 -0.4
58,557 - Pf1N1B4_5631 0.32 -0.6
58,732 - Pf1N1B4_5631 0.45 +1.1
58,732 - Pf1N1B4_5631 0.45 -0.8
58,732 - Pf1N1B4_5631 0.45 -1.6

Or see this region's nucleotide sequence