Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5532

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5531 and Pf1N1B4_5532 are separated by 836 nucleotides Pf1N1B4_5531 - hypothetical protein, at 290,418 to 290,804 _5531 Pf1N1B4_5532 - hypothetical protein, at 291,641 to 293,752 _5532 Position (kb) 291 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 290.772 kb on + strandat 290.878 kb on + strandat 290.878 kb on + strandat 290.878 kb on + strandat 290.879 kb on - strandat 290.879 kb on - strandat 290.925 kb on + strandat 291.031 kb on - strandat 291.031 kb on - strandat 291.031 kb on - strandat 291.031 kb on - strandat 291.031 kb on - strandat 291.037 kb on + strandat 291.037 kb on + strandat 291.037 kb on + strandat 291.055 kb on + strandat 291.056 kb on - strandat 291.092 kb on + strandat 291.092 kb on + strandat 291.092 kb on + strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.093 kb on - strandat 291.097 kb on - strandat 291.097 kb on - strandat 291.181 kb on + strandat 291.182 kb on - strandat 291.182 kb on - strandat 291.342 kb on + strandat 291.343 kb on - strandat 291.348 kb on + strandat 291.348 kb on + strandat 291.370 kb on - strandat 291.391 kb on + strandat 291.392 kb on - strandat 291.392 kb on - strandat 291.396 kb on - strandat 291.424 kb on + strandat 291.424 kb on + strandat 291.425 kb on - strandat 291.425 kb on - strandat 291.439 kb on + strandat 291.439 kb on + strandat 291.631 kb on + strandat 291.631 kb on + strandat 291.632 kb on - strandat 291.632 kb on - strandat 291.642 kb on + strandat 291.643 kb on - strandat 291.643 kb on - strandat 291.643 kb on - strandat 291.643 kb on - strandat 291.643 kb on - strandat 291.643 kb on - strandat 291.643 kb on - strandat 291.643 kb on - strandat 291.643 kb on - strandat 291.726 kb on - strandat 291.732 kb on - strandat 291.732 kb on - strandat 291.768 kb on + strandat 291.768 kb on + strandat 291.821 kb on - strandat 291.852 kb on - strandat 291.982 kb on + strand, within Pf1N1B4_5532at 291.983 kb on - strand, within Pf1N1B4_5532at 291.983 kb on - strand, within Pf1N1B4_5532at 292.001 kb on - strand, within Pf1N1B4_5532at 292.080 kb on - strand, within Pf1N1B4_5532at 292.241 kb on + strand, within Pf1N1B4_5532at 292.242 kb on - strand, within Pf1N1B4_5532at 292.242 kb on - strand, within Pf1N1B4_5532at 292.511 kb on - strandat 292.685 kb on - strand, within Pf1N1B4_5532at 292.939 kb on + strand, within Pf1N1B4_5532at 292.940 kb on - strand, within Pf1N1B4_5532at 292.940 kb on - strand, within Pf1N1B4_5532at 292.940 kb on - strand, within Pf1N1B4_5532at 293.219 kb on - strand, within Pf1N1B4_5532at 293.219 kb on - strand, within Pf1N1B4_5532at 293.249 kb on - strand, within Pf1N1B4_5532at 293.249 kb on - strand, within Pf1N1B4_5532at 293.299 kb on + strand, within Pf1N1B4_5532at 293.300 kb on - strand, within Pf1N1B4_5532at 293.314 kb on - strand, within Pf1N1B4_5532at 293.314 kb on - strand, within Pf1N1B4_5532at 293.314 kb on - strand, within Pf1N1B4_5532at 293.325 kb on + strand, within Pf1N1B4_5532at 293.326 kb on - strand, within Pf1N1B4_5532at 293.333 kb on - strand, within Pf1N1B4_5532at 293.520 kb on + strand, within Pf1N1B4_5532at 293.630 kb on + strandat 293.630 kb on + strandat 293.706 kb on + strandat 293.752 kb on + strandat 293.753 kb on - strandat 293.756 kb on + strandat 293.756 kb on + strandat 293.756 kb on + strandat 293.757 kb on - strandat 293.787 kb on + strandat 293.788 kb on - strandat 293.788 kb on - strandat 293.788 kb on - strandat 293.823 kb on + strandat 293.851 kb on - strandat 293.887 kb on + strandat 293.888 kb on - strandat 293.888 kb on - strandat 293.898 kb on - strandat 293.898 kb on - strandat 293.901 kb on + strandat 293.901 kb on + strandat 293.901 kb on + strandat 293.907 kb on + strandat 293.907 kb on + strandat 293.986 kb on - strandat 293.998 kb on + strandat 293.998 kb on + strandat 293.998 kb on + strandat 293.999 kb on - strandat 293.999 kb on - strandat 294.001 kb on + strandat 294.002 kb on - strandat 294.002 kb on - strandat 294.002 kb on - strandat 294.095 kb on + strandat 294.122 kb on + strandat 294.122 kb on + strandat 294.122 kb on + strandat 294.122 kb on + strandat 294.122 kb on + strandat 294.122 kb on + strandat 294.445 kb on + strandat 294.448 kb on + strandat 294.448 kb on + strandat 294.448 kb on + strandat 294.448 kb on + strandat 294.476 kb on + strandat 294.479 kb on + strandat 294.479 kb on + strandat 294.479 kb on + strandat 294.479 kb on + strandat 294.479 kb on + strandat 294.479 kb on + strandat 294.514 kb on + strandat 294.575 kb on + strandat 294.609 kb on + strandat 294.609 kb on + strandat 294.610 kb on - strandat 294.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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290,772 + +0.1
290,878 + -2.8
290,878 + -1.2
290,878 + -0.9
290,879 - +0.4
290,879 - +1.3
290,925 + -0.6
291,031 - -0.5
291,031 - -1.5
291,031 - -1.5
291,031 - +1.1
291,031 - -1.9
291,037 + -0.1
291,037 + -1.5
291,037 + +0.9
291,055 + -1.7
291,056 - -0.9
291,092 + +0.9
291,092 + +1.6
291,092 + +0.1
291,093 - -1.2
291,093 - -2.2
291,093 - -0.3
291,093 - -0.6
291,093 - -2.2
291,093 - +1.7
291,093 - +1.1
291,097 - -0.5
291,097 - -1.2
291,181 + +0.3
291,182 - -1.5
291,182 - -0.2
291,342 + +0.3
291,343 - -1.5
291,348 + -1.0
291,348 + -0.2
291,370 - -0.6
291,391 + +0.1
291,392 - -0.6
291,392 - -0.3
291,396 - +1.3
291,424 + -0.5
291,424 + +2.0
291,425 - +2.5
291,425 - +1.4
291,439 + +0.8
291,439 + +0.5
291,631 + +0.5
291,631 + -0.7
291,632 - -1.9
291,632 - -0.6
291,642 + -3.0
291,643 - +1.1
291,643 - -0.8
291,643 - -0.2
291,643 - -1.9
291,643 - +0.1
291,643 - -0.9
291,643 - +0.4
291,643 - -0.9
291,643 - -1.7
291,726 - +0.4
291,732 - +0.5
291,732 - -0.9
291,768 + +2.1
291,768 + -1.5
291,821 - +1.1
291,852 - -0.5
291,982 + Pf1N1B4_5532 0.16 -0.2
291,983 - Pf1N1B4_5532 0.16 +0.1
291,983 - Pf1N1B4_5532 0.16 +2.4
292,001 - Pf1N1B4_5532 0.17 +0.6
292,080 - Pf1N1B4_5532 0.21 +0.6
292,241 + Pf1N1B4_5532 0.28 -0.5
292,242 - Pf1N1B4_5532 0.28 -0.5
292,242 - Pf1N1B4_5532 0.28 +0.5
292,511 - -1.5
292,685 - Pf1N1B4_5532 0.49 -1.0
292,939 + Pf1N1B4_5532 0.61 -1.2
292,940 - Pf1N1B4_5532 0.62 -1.9
292,940 - Pf1N1B4_5532 0.62 +1.1
292,940 - Pf1N1B4_5532 0.62 -2.7
293,219 - Pf1N1B4_5532 0.75 +3.4
293,219 - Pf1N1B4_5532 0.75 -1.6
293,249 - Pf1N1B4_5532 0.76 +1.1
293,249 - Pf1N1B4_5532 0.76 -0.2
293,299 + Pf1N1B4_5532 0.79 -2.6
293,300 - Pf1N1B4_5532 0.79 +0.1
293,314 - Pf1N1B4_5532 0.79 -1.3
293,314 - Pf1N1B4_5532 0.79 +1.4
293,314 - Pf1N1B4_5532 0.79 -2.3
293,325 + Pf1N1B4_5532 0.80 +1.1
293,326 - Pf1N1B4_5532 0.80 -1.6
293,333 - Pf1N1B4_5532 0.80 +1.4
293,520 + Pf1N1B4_5532 0.89 -0.8
293,630 + -0.5
293,630 + +0.2
293,706 + -0.5
293,752 + +1.1
293,753 - +1.1
293,756 + +0.4
293,756 + -0.1
293,756 + +1.5
293,757 - -0.2
293,787 + +1.5
293,788 - +0.1
293,788 - +0.5
293,788 - +0.5
293,823 + +0.4
293,851 - -0.5
293,887 + -2.3
293,888 - +0.1
293,888 - +1.0
293,898 - -0.9
293,898 - -0.5
293,901 + -0.9
293,901 + +1.3
293,901 + -0.3
293,907 + -0.5
293,907 + -1.5
293,986 - -1.3
293,998 + -2.3
293,998 + -1.2
293,998 + +1.1
293,999 - -0.5
293,999 - +1.6
294,001 + +0.1
294,002 - +0.8
294,002 - -1.2
294,002 - +1.3
294,095 + -1.2
294,122 + +0.7
294,122 + -2.6
294,122 + -0.7
294,122 + +0.1
294,122 + +0.5
294,122 + -0.8
294,445 + +1.3
294,448 + +0.8
294,448 + -1.9
294,448 + -1.3
294,448 + -1.2
294,476 + +0.4
294,479 + -0.9
294,479 + -1.5
294,479 + +0.7
294,479 + +0.4
294,479 + +0.1
294,479 + +0.1
294,514 + +0.5
294,575 + -0.5
294,609 + -1.2
294,609 + -1.9
294,610 - +0.1
294,736 - -0.5

Or see this region's nucleotide sequence