Experiment: Benzethonium chloride 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4174 and Pf1N1B4_4175 overlap by 15 nucleotides Pf1N1B4_4175 and Pf1N1B4_4176 overlap by 11 nucleotides Pf1N1B4_4176 and Pf1N1B4_4177 are separated by 33 nucleotides Pf1N1B4_4177 and Pf1N1B4_4178 are separated by 167 nucleotides
Pf1N1B4_4174 - hypothetical protein, at 4,623,579 to 4,623,761
_4174
Pf1N1B4_4175 - Universal stress protein family 5, at 4,623,747 to 4,624,667
_4175
Pf1N1B4_4176 - Alcohol dehydrogenase (EC 1.1.1.1), at 4,624,657 to 4,625,640
_4176
Pf1N1B4_4177 - transcriptional regulator, Crp/Fnr family, at 4,625,674 to 4,626,420
_4177
Pf1N1B4_4178 - Cell division protein FtsH (EC 3.4.24.-), at 4,626,588 to 4,628,375
_4178
Position (kb)
4624
4625
4626 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4623.667 kb on - strand, within Pf1N1B4_4174 at 4623.709 kb on + strand, within Pf1N1B4_4174 at 4623.709 kb on + strand, within Pf1N1B4_4174 at 4623.792 kb on + strand at 4623.868 kb on + strand, within Pf1N1B4_4175 at 4623.868 kb on + strand, within Pf1N1B4_4175 at 4623.868 kb on + strand, within Pf1N1B4_4175 at 4623.868 kb on + strand, within Pf1N1B4_4175 at 4623.869 kb on - strand, within Pf1N1B4_4175 at 4623.869 kb on - strand at 4624.306 kb on + strand at 4624.329 kb on + strand, within Pf1N1B4_4175 at 4624.329 kb on + strand at 4624.329 kb on + strand, within Pf1N1B4_4175 at 4624.329 kb on + strand, within Pf1N1B4_4175 at 4624.330 kb on - strand, within Pf1N1B4_4175 at 4624.525 kb on - strand, within Pf1N1B4_4175 at 4624.525 kb on - strand, within Pf1N1B4_4175 at 4624.543 kb on + strand at 4624.544 kb on - strand, within Pf1N1B4_4175 at 4624.764 kb on + strand, within Pf1N1B4_4176 at 4624.764 kb on + strand, within Pf1N1B4_4176 at 4625.036 kb on + strand at 4625.036 kb on + strand, within Pf1N1B4_4176 at 4625.036 kb on + strand, within Pf1N1B4_4176 at 4625.076 kb on - strand, within Pf1N1B4_4176 at 4625.076 kb on - strand, within Pf1N1B4_4176 at 4625.276 kb on + strand, within Pf1N1B4_4176 at 4625.555 kb on - strand at 4625.643 kb on + strand at 4625.644 kb on - strand at 4625.644 kb on - strand at 4625.644 kb on - strand at 4625.644 kb on - strand at 4625.825 kb on + strand, within Pf1N1B4_4177 at 4625.826 kb on - strand, within Pf1N1B4_4177 at 4626.056 kb on + strand, within Pf1N1B4_4177 at 4626.057 kb on - strand, within Pf1N1B4_4177 at 4626.389 kb on + strand at 4626.425 kb on + strand at 4626.453 kb on + strand at 4626.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM remove 4,623,667 - Pf1N1B4_4174 0.48 -2.5 4,623,709 + Pf1N1B4_4174 0.71 +0.0 4,623,709 + Pf1N1B4_4174 0.71 -0.6 4,623,792 + -1.2 4,623,868 + Pf1N1B4_4175 0.13 +1.2 4,623,868 + Pf1N1B4_4175 0.13 +1.2 4,623,868 + Pf1N1B4_4175 0.13 +0.6 4,623,868 + Pf1N1B4_4175 0.13 -1.8 4,623,869 - Pf1N1B4_4175 0.13 +0.1 4,623,869 - +1.2 4,624,306 + +0.8 4,624,329 + Pf1N1B4_4175 0.63 +0.8 4,624,329 + +0.8 4,624,329 + Pf1N1B4_4175 0.63 -0.2 4,624,329 + Pf1N1B4_4175 0.63 -1.2 4,624,330 - Pf1N1B4_4175 0.63 -1.5 4,624,525 - Pf1N1B4_4175 0.84 +1.1 4,624,525 - Pf1N1B4_4175 0.84 +1.8 4,624,543 + -1.2 4,624,544 - Pf1N1B4_4175 0.87 -0.7 4,624,764 + Pf1N1B4_4176 0.11 -2.2 4,624,764 + Pf1N1B4_4176 0.11 +1.2 4,625,036 + -1.2 4,625,036 + Pf1N1B4_4176 0.39 -2.4 4,625,036 + Pf1N1B4_4176 0.39 -1.5 4,625,076 - Pf1N1B4_4176 0.43 -2.0 4,625,076 - Pf1N1B4_4176 0.43 -0.2 4,625,276 + Pf1N1B4_4176 0.63 +0.0 4,625,555 - +0.8 4,625,643 + -2.6 4,625,644 - +1.4 4,625,644 - -0.8 4,625,644 - -0.8 4,625,644 - +1.5 4,625,825 + Pf1N1B4_4177 0.20 +0.2 4,625,826 - Pf1N1B4_4177 0.20 -2.2 4,626,056 + Pf1N1B4_4177 0.51 +1.1 4,626,057 - Pf1N1B4_4177 0.51 -0.2 4,626,389 + +0.8 4,626,425 + -0.8 4,626,453 + +0.1 4,626,453 + -0.2
Or see this region's nucleotide sequence