Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1514

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1513 and Pf1N1B4_1514 overlap by 14 nucleotidesPf1N1B4_1514 and Pf1N1B4_1515 overlap by 4 nucleotidesPf1N1B4_1515 and Pf1N1B4_1516 overlap by 1 nucleotides Pf1N1B4_1513 - FIG064705: cation/hydrogen antiporter, at 1,746,387 to 1,747,547 _1513 Pf1N1B4_1514 - FIG022199: FAD-binding protein, at 1,747,534 to 1,748,781 _1514 Pf1N1B4_1515 - FIG025233: SAM-dependent methyltransferases, at 1,748,778 to 1,749,503 _1515 Pf1N1B4_1516 - FIG085779: Lipoprotein, at 1,749,503 to 1,749,985 _1516 Position (kb) 1747 1748 1749Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1746.693 kb on - strand, within Pf1N1B4_1513at 1746.804 kb on + strand, within Pf1N1B4_1513at 1746.804 kb on + strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.805 kb on - strand, within Pf1N1B4_1513at 1746.810 kb on + strand, within Pf1N1B4_1513at 1746.811 kb on - strand, within Pf1N1B4_1513at 1746.930 kb on - strand, within Pf1N1B4_1513at 1747.080 kb on + strand, within Pf1N1B4_1513at 1747.354 kb on + strand, within Pf1N1B4_1513at 1747.431 kb on + strand, within Pf1N1B4_1513at 1747.431 kb on + strand, within Pf1N1B4_1513at 1747.565 kb on + strandat 1747.620 kb on + strandat 1747.792 kb on + strand, within Pf1N1B4_1514at 1747.793 kb on - strand, within Pf1N1B4_1514at 1747.793 kb on - strandat 1747.793 kb on - strand, within Pf1N1B4_1514at 1747.986 kb on + strand, within Pf1N1B4_1514at 1748.328 kb on - strand, within Pf1N1B4_1514at 1748.536 kb on - strand, within Pf1N1B4_1514at 1748.594 kb on - strand, within Pf1N1B4_1514at 1748.594 kb on - strand, within Pf1N1B4_1514at 1748.594 kb on - strand, within Pf1N1B4_1514at 1748.594 kb on - strand, within Pf1N1B4_1514at 1748.785 kb on - strandat 1748.785 kb on - strandat 1748.785 kb on - strandat 1748.785 kb on - strandat 1748.799 kb on + strandat 1748.799 kb on + strandat 1748.799 kb on + strandat 1748.800 kb on - strandat 1748.800 kb on - strandat 1748.800 kb on - strandat 1748.800 kb on - strandat 1748.860 kb on + strand, within Pf1N1B4_1515at 1748.860 kb on + strand, within Pf1N1B4_1515at 1748.860 kb on + strand, within Pf1N1B4_1515at 1748.860 kb on + strand, within Pf1N1B4_1515at 1748.860 kb on + strand, within Pf1N1B4_1515at 1748.860 kb on + strand, within Pf1N1B4_1515at 1748.860 kb on + strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1748.861 kb on - strand, within Pf1N1B4_1515at 1749.067 kb on + strand, within Pf1N1B4_1515at 1749.067 kb on + strand, within Pf1N1B4_1515at 1749.067 kb on + strand, within Pf1N1B4_1515at 1749.068 kb on - strand, within Pf1N1B4_1515at 1749.068 kb on - strand, within Pf1N1B4_1515at 1749.068 kb on - strand, within Pf1N1B4_1515at 1749.068 kb on - strand, within Pf1N1B4_1515at 1749.068 kb on - strand, within Pf1N1B4_1515at 1749.187 kb on - strand, within Pf1N1B4_1515at 1749.211 kb on - strand, within Pf1N1B4_1515at 1749.240 kb on + strand, within Pf1N1B4_1515at 1749.240 kb on + strand, within Pf1N1B4_1515at 1749.240 kb on + strand, within Pf1N1B4_1515at 1749.240 kb on + strand, within Pf1N1B4_1515at 1749.240 kb on + strand, within Pf1N1B4_1515at 1749.240 kb on + strand, within Pf1N1B4_1515at 1749.240 kb on + strand, within Pf1N1B4_1515at 1749.241 kb on - strand, within Pf1N1B4_1515at 1749.241 kb on - strand, within Pf1N1B4_1515at 1749.241 kb on - strand, within Pf1N1B4_1515at 1749.241 kb on - strand, within Pf1N1B4_1515at 1749.248 kb on + strand, within Pf1N1B4_1515at 1749.248 kb on + strand, within Pf1N1B4_1515at 1749.248 kb on + strand, within Pf1N1B4_1515at 1749.248 kb on + strand, within Pf1N1B4_1515at 1749.249 kb on - strand, within Pf1N1B4_1515at 1749.363 kb on + strand, within Pf1N1B4_1515at 1749.363 kb on + strand, within Pf1N1B4_1515at 1749.364 kb on - strand, within Pf1N1B4_1515at 1749.369 kb on + strand, within Pf1N1B4_1515at 1749.369 kb on + strand, within Pf1N1B4_1515at 1749.369 kb on + strand, within Pf1N1B4_1515at 1749.370 kb on - strand, within Pf1N1B4_1515at 1749.370 kb on - strand, within Pf1N1B4_1515at 1749.370 kb on - strandat 1749.370 kb on - strand, within Pf1N1B4_1515at 1749.373 kb on + strand, within Pf1N1B4_1515at 1749.373 kb on + strand, within Pf1N1B4_1515at 1749.373 kb on + strand, within Pf1N1B4_1515at 1749.373 kb on + strand, within Pf1N1B4_1515at 1749.373 kb on + strand, within Pf1N1B4_1515at 1749.373 kb on + strand, within Pf1N1B4_1515at 1749.373 kb on + strand, within Pf1N1B4_1515at 1749.373 kb on + strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.374 kb on - strand, within Pf1N1B4_1515at 1749.469 kb on + strandat 1749.469 kb on + strandat 1749.470 kb on - strandat 1749.495 kb on + strandat 1749.496 kb on - strandat 1749.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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1,746,693 - Pf1N1B4_1513 0.26 -0.4
1,746,804 + Pf1N1B4_1513 0.36 -0.9
1,746,804 + Pf1N1B4_1513 0.36 -0.4
1,746,805 - Pf1N1B4_1513 0.36 +2.7
1,746,805 - Pf1N1B4_1513 0.36 -1.0
1,746,805 - Pf1N1B4_1513 0.36 -2.0
1,746,805 - Pf1N1B4_1513 0.36 -1.9
1,746,805 - Pf1N1B4_1513 0.36 -0.5
1,746,805 - Pf1N1B4_1513 0.36 +0.3
1,746,805 - Pf1N1B4_1513 0.36 -0.5
1,746,805 - Pf1N1B4_1513 0.36 +1.5
1,746,805 - Pf1N1B4_1513 0.36 -1.5
1,746,810 + Pf1N1B4_1513 0.36 +1.3
1,746,811 - Pf1N1B4_1513 0.37 +1.0
1,746,930 - Pf1N1B4_1513 0.47 -1.0
1,747,080 + Pf1N1B4_1513 0.60 -0.9
1,747,354 + Pf1N1B4_1513 0.83 -1.4
1,747,431 + Pf1N1B4_1513 0.90 +0.1
1,747,431 + Pf1N1B4_1513 0.90 +0.5
1,747,565 + +0.1
1,747,620 + +0.5
1,747,792 + Pf1N1B4_1514 0.21 -1.4
1,747,793 - Pf1N1B4_1514 0.21 -1.8
1,747,793 - -0.9
1,747,793 - Pf1N1B4_1514 0.21 -1.4
1,747,986 + Pf1N1B4_1514 0.36 -1.1
1,748,328 - Pf1N1B4_1514 0.64 -2.4
1,748,536 - Pf1N1B4_1514 0.80 -0.9
1,748,594 - Pf1N1B4_1514 0.85 -2.2
1,748,594 - Pf1N1B4_1514 0.85 -0.1
1,748,594 - Pf1N1B4_1514 0.85 -2.0
1,748,594 - Pf1N1B4_1514 0.85 +0.7
1,748,785 - +0.9
1,748,785 - +0.1
1,748,785 - -1.1
1,748,785 - -0.5
1,748,799 + -0.8
1,748,799 + -0.9
1,748,799 + -0.5
1,748,800 - -0.9
1,748,800 - +1.9
1,748,800 - +4.2
1,748,800 - +1.0
1,748,860 + Pf1N1B4_1515 0.11 +0.5
1,748,860 + Pf1N1B4_1515 0.11 +1.7
1,748,860 + Pf1N1B4_1515 0.11 +0.6
1,748,860 + Pf1N1B4_1515 0.11 -1.2
1,748,860 + Pf1N1B4_1515 0.11 -0.9
1,748,860 + Pf1N1B4_1515 0.11 +0.9
1,748,860 + Pf1N1B4_1515 0.11 +0.7
1,748,861 - Pf1N1B4_1515 0.11 +2.7
1,748,861 - Pf1N1B4_1515 0.11 +1.1
1,748,861 - Pf1N1B4_1515 0.11 -1.9
1,748,861 - Pf1N1B4_1515 0.11 +0.5
1,748,861 - Pf1N1B4_1515 0.11 -1.6
1,748,861 - Pf1N1B4_1515 0.11 -0.1
1,748,861 - Pf1N1B4_1515 0.11 -0.1
1,748,861 - Pf1N1B4_1515 0.11 +0.7
1,748,861 - Pf1N1B4_1515 0.11 -1.4
1,749,067 + Pf1N1B4_1515 0.40 -0.1
1,749,067 + Pf1N1B4_1515 0.40 -1.1
1,749,067 + Pf1N1B4_1515 0.40 -0.1
1,749,068 - Pf1N1B4_1515 0.40 -0.1
1,749,068 - Pf1N1B4_1515 0.40 -1.5
1,749,068 - Pf1N1B4_1515 0.40 -1.0
1,749,068 - Pf1N1B4_1515 0.40 +1.1
1,749,068 - Pf1N1B4_1515 0.40 +2.2
1,749,187 - Pf1N1B4_1515 0.56 +1.5
1,749,211 - Pf1N1B4_1515 0.60 +0.5
1,749,240 + Pf1N1B4_1515 0.64 +0.6
1,749,240 + Pf1N1B4_1515 0.64 +0.8
1,749,240 + Pf1N1B4_1515 0.64 -0.1
1,749,240 + Pf1N1B4_1515 0.64 +0.6
1,749,240 + Pf1N1B4_1515 0.64 -0.5
1,749,240 + Pf1N1B4_1515 0.64 -0.5
1,749,240 + Pf1N1B4_1515 0.64 +2.0
1,749,241 - Pf1N1B4_1515 0.64 +1.0
1,749,241 - Pf1N1B4_1515 0.64 -1.4
1,749,241 - Pf1N1B4_1515 0.64 -0.5
1,749,241 - Pf1N1B4_1515 0.64 -1.7
1,749,248 + Pf1N1B4_1515 0.65 -2.2
1,749,248 + Pf1N1B4_1515 0.65 +0.4
1,749,248 + Pf1N1B4_1515 0.65 -0.9
1,749,248 + Pf1N1B4_1515 0.65 +1.1
1,749,249 - Pf1N1B4_1515 0.65 -1.5
1,749,363 + Pf1N1B4_1515 0.81 +0.6
1,749,363 + Pf1N1B4_1515 0.81 -0.9
1,749,364 - Pf1N1B4_1515 0.81 +0.1
1,749,369 + Pf1N1B4_1515 0.81 +0.1
1,749,369 + Pf1N1B4_1515 0.81 -0.5
1,749,369 + Pf1N1B4_1515 0.81 -0.1
1,749,370 - Pf1N1B4_1515 0.82 -1.1
1,749,370 - Pf1N1B4_1515 0.82 -1.3
1,749,370 - +3.5
1,749,370 - Pf1N1B4_1515 0.82 +0.1
1,749,373 + Pf1N1B4_1515 0.82 -0.1
1,749,373 + Pf1N1B4_1515 0.82 -0.1
1,749,373 + Pf1N1B4_1515 0.82 -0.1
1,749,373 + Pf1N1B4_1515 0.82 -0.0
1,749,373 + Pf1N1B4_1515 0.82 -2.0
1,749,373 + Pf1N1B4_1515 0.82 -0.4
1,749,373 + Pf1N1B4_1515 0.82 -0.7
1,749,373 + Pf1N1B4_1515 0.82 +0.6
1,749,374 - Pf1N1B4_1515 0.82 -0.1
1,749,374 - Pf1N1B4_1515 0.82 +0.5
1,749,374 - Pf1N1B4_1515 0.82 -0.5
1,749,374 - Pf1N1B4_1515 0.82 -1.4
1,749,374 - Pf1N1B4_1515 0.82 -1.5
1,749,374 - Pf1N1B4_1515 0.82 +0.2
1,749,374 - Pf1N1B4_1515 0.82 -1.9
1,749,374 - Pf1N1B4_1515 0.82 -1.7
1,749,374 - Pf1N1B4_1515 0.82 +0.5
1,749,374 - Pf1N1B4_1515 0.82 +0.0
1,749,469 + -1.7
1,749,469 + -1.1
1,749,470 - +1.0
1,749,495 + +1.9
1,749,496 - -1.4
1,749,496 - -0.1

Or see this region's nucleotide sequence