Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1268

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1267 and Pf1N1B4_1268 are separated by 128 nucleotidesPf1N1B4_1268 and Pf1N1B4_1269 are separated by 83 nucleotides Pf1N1B4_1267 - Methyl-accepting chemotaxis protein, at 1,447,467 to 1,449,413 _1267 Pf1N1B4_1268 - Transcriptional regulator, AraC family, at 1,449,542 to 1,450,333 _1268 Pf1N1B4_1269 - Sodium/bile acid symporter family, at 1,450,417 to 1,451,445 _1269 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1449.469 kb on + strandat 1449.598 kb on + strandat 1449.599 kb on - strandat 1449.619 kb on - strandat 1449.689 kb on + strand, within Pf1N1B4_1268at 1449.689 kb on + strand, within Pf1N1B4_1268at 1449.788 kb on + strand, within Pf1N1B4_1268at 1449.788 kb on + strand, within Pf1N1B4_1268at 1449.788 kb on + strand, within Pf1N1B4_1268at 1449.788 kb on + strand, within Pf1N1B4_1268at 1449.789 kb on - strand, within Pf1N1B4_1268at 1449.789 kb on - strand, within Pf1N1B4_1268at 1449.949 kb on - strand, within Pf1N1B4_1268at 1450.056 kb on + strand, within Pf1N1B4_1268at 1450.057 kb on - strandat 1450.057 kb on - strand, within Pf1N1B4_1268at 1450.191 kb on + strand, within Pf1N1B4_1268at 1450.191 kb on + strand, within Pf1N1B4_1268at 1450.263 kb on + strandat 1450.263 kb on + strandat 1450.263 kb on + strandat 1450.263 kb on + strandat 1450.263 kb on + strandat 1450.263 kb on + strandat 1450.263 kb on + strandat 1450.263 kb on + strandat 1450.264 kb on - strandat 1450.264 kb on - strandat 1450.264 kb on - strandat 1450.264 kb on - strandat 1450.264 kb on - strandat 1450.264 kb on - strandat 1450.344 kb on + strandat 1450.344 kb on + strandat 1450.344 kb on + strandat 1450.344 kb on + strandat 1450.344 kb on + strandat 1450.345 kb on - strandat 1450.345 kb on - strandat 1450.345 kb on - strandat 1450.381 kb on - strandat 1450.396 kb on - strandat 1450.396 kb on - strandat 1450.404 kb on - strandat 1450.404 kb on - strandat 1450.495 kb on + strandat 1450.495 kb on + strandat 1450.495 kb on + strandat 1450.495 kb on + strandat 1450.496 kb on - strandat 1450.496 kb on - strandat 1450.496 kb on - strandat 1450.496 kb on - strandat 1450.496 kb on - strandat 1450.543 kb on + strand, within Pf1N1B4_1269at 1450.544 kb on - strand, within Pf1N1B4_1269at 1450.747 kb on + strandat 1450.747 kb on + strand, within Pf1N1B4_1269at 1450.747 kb on + strand, within Pf1N1B4_1269at 1450.748 kb on - strand, within Pf1N1B4_1269at 1450.748 kb on - strand, within Pf1N1B4_1269at 1450.748 kb on - strand, within Pf1N1B4_1269at 1450.814 kb on + strand, within Pf1N1B4_1269at 1450.814 kb on + strand, within Pf1N1B4_1269at 1450.814 kb on + strand, within Pf1N1B4_1269at 1450.815 kb on - strand, within Pf1N1B4_1269at 1450.815 kb on - strand, within Pf1N1B4_1269at 1450.850 kb on + strand, within Pf1N1B4_1269at 1450.850 kb on + strand, within Pf1N1B4_1269at 1450.850 kb on + strand, within Pf1N1B4_1269at 1450.940 kb on + strand, within Pf1N1B4_1269at 1450.940 kb on + strand, within Pf1N1B4_1269at 1450.955 kb on + strand, within Pf1N1B4_1269at 1451.065 kb on + strand, within Pf1N1B4_1269

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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1,449,469 + +1.6
1,449,598 + -0.3
1,449,599 - +3.4
1,449,619 - +1.1
1,449,689 + Pf1N1B4_1268 0.19 -1.9
1,449,689 + Pf1N1B4_1268 0.19 -0.5
1,449,788 + Pf1N1B4_1268 0.31 -0.1
1,449,788 + Pf1N1B4_1268 0.31 -2.5
1,449,788 + Pf1N1B4_1268 0.31 -1.8
1,449,788 + Pf1N1B4_1268 0.31 +0.4
1,449,789 - Pf1N1B4_1268 0.31 -1.0
1,449,789 - Pf1N1B4_1268 0.31 -1.8
1,449,949 - Pf1N1B4_1268 0.51 +0.4
1,450,056 + Pf1N1B4_1268 0.65 -0.5
1,450,057 - -0.6
1,450,057 - Pf1N1B4_1268 0.65 -0.4
1,450,191 + Pf1N1B4_1268 0.82 -1.8
1,450,191 + Pf1N1B4_1268 0.82 -1.7
1,450,263 + -0.2
1,450,263 + -1.2
1,450,263 + +0.8
1,450,263 + -0.2
1,450,263 + -0.2
1,450,263 + +1.4
1,450,263 + +0.0
1,450,263 + +2.0
1,450,264 - +2.6
1,450,264 - -1.8
1,450,264 - +0.9
1,450,264 - -0.6
1,450,264 - +1.5
1,450,264 - +1.0
1,450,344 + -0.0
1,450,344 + -0.6
1,450,344 + +2.1
1,450,344 + -0.1
1,450,344 + -2.6
1,450,345 - -0.6
1,450,345 - -0.7
1,450,345 - +0.7
1,450,381 - -1.0
1,450,396 - +0.9
1,450,396 - -1.2
1,450,404 - +0.2
1,450,404 - -0.1
1,450,495 + -0.2
1,450,495 + +0.4
1,450,495 + +0.8
1,450,495 + +0.0
1,450,496 - -3.3
1,450,496 - -1.4
1,450,496 - +0.4
1,450,496 - +1.0
1,450,496 - -0.0
1,450,543 + Pf1N1B4_1269 0.12 -0.2
1,450,544 - Pf1N1B4_1269 0.12 -1.2
1,450,747 + -0.2
1,450,747 + Pf1N1B4_1269 0.32 -2.2
1,450,747 + Pf1N1B4_1269 0.32 -1.8
1,450,748 - Pf1N1B4_1269 0.32 +1.4
1,450,748 - Pf1N1B4_1269 0.32 +0.4
1,450,748 - Pf1N1B4_1269 0.32 +2.0
1,450,814 + Pf1N1B4_1269 0.39 +0.8
1,450,814 + Pf1N1B4_1269 0.39 +0.4
1,450,814 + Pf1N1B4_1269 0.39 -0.6
1,450,815 - Pf1N1B4_1269 0.39 -0.4
1,450,815 - Pf1N1B4_1269 0.39 -1.4
1,450,850 + Pf1N1B4_1269 0.42 -1.0
1,450,850 + Pf1N1B4_1269 0.42 -1.6
1,450,850 + Pf1N1B4_1269 0.42 +2.0
1,450,940 + Pf1N1B4_1269 0.51 +0.7
1,450,940 + Pf1N1B4_1269 0.51 -1.4
1,450,955 + Pf1N1B4_1269 0.52 -0.2
1,451,065 + Pf1N1B4_1269 0.63 -0.6

Or see this region's nucleotide sequence