Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00062 and CCNA_03913 are separated by 78 nucleotides CCNA_03913 and CCNA_00063 are separated by 41 nucleotides
CCNA_00062: CCNA_00062 - tryptophanyl-tRNA synthetase, at 63,327 to 64,361
_00062
CCNA_03913: CCNA_03913 - hypothetical protein, at 64,440 to 64,487
_03913
CCNA_00063: CCNA_00063 - MviN-family integral membrane protein, at 64,529 to 66,091
_00063
Position (kb) 64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 64.363 kb on + strand at 64.384 kb on + strand at 64.450 kb on - strand, within CCNA_03913 at 64.500 kb on + strand at 64.502 kb on + strand at 64.502 kb on + strand at 64.502 kb on + strand at 64.510 kb on - strand at 64.510 kb on - strand at 64.510 kb on - strand at 64.510 kb on - strand at 64.512 kb on + strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.525 kb on - strand at 64.525 kb on - strand at 64.530 kb on - strand at 64.557 kb on + strand at 64.560 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.649 kb on + strand at 64.649 kb on + strand at 64.657 kb on - strand at 64.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 64,363 + +0.2 64,384 + +0.4 64,450 - CCNA_03913 0.21 +1.2 64,500 + +0.9 64,502 + +0.4 64,502 + +0.1 64,502 + -1.1 64,510 - +0.6 64,510 - +0.2 64,510 - -0.7 64,510 - -0.9 64,512 + -0.9 64,520 - +0.6 64,520 - +0.4 64,520 - +1.4 64,525 - -0.5 64,525 - -1.5 64,530 - +1.9 64,557 + -2.0 64,560 - +1.1 64,565 - +1.0 64,565 - +0.5 64,565 - +0.4 64,565 - +0.1 64,565 - +0.1 64,565 - +0.9 64,565 - +0.1 64,581 - -0.7 64,581 - +0.3 64,581 - +0.4 64,613 - +0.3 64,613 - -0.3 64,613 - +0.4 64,613 - +0.3 64,613 - +0.7 64,613 - -0.0 64,613 - -1.4 64,613 - +0.1 64,613 - +0.6 64,613 - -0.2 64,613 - +1.2 64,613 - -0.2 64,613 - +0.2 64,649 + -0.3 64,649 + -2.9 64,657 - +0.5 64,670 - +0.4
Or see this region's nucleotide sequence