Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03123

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
3,268,481	-		CCNA_03120	0.85	-0.3
3,268,539	-				+0.4
3,268,590	+		CCNA_03121	0.12	+1.0
3,268,594	+		CCNA_03121	0.13	+1.1
3,268,637	-		CCNA_03121	0.30	+0.0
3,268,647	-		CCNA_03121	0.34	+0.3
3,268,669	+		CCNA_03121	0.42	+1.4
3,268,671	-		CCNA_03121	0.43	+0.4
3,268,677	-		CCNA_03121	0.45	+0.0
3,268,711	-		CCNA_03121	0.58	+0.3
3,268,743	+		CCNA_03121	0.70	+0.7
3,268,762	-		CCNA_03121	0.78	-0.1
3,268,787	-		CCNA_03121	0.87	+0.3
3,268,798	-				+0.4
3,268,843	-				-0.5
3,268,880	+		CCNA_03122	0.11	+0.2
3,268,908	+		CCNA_03122	0.15	-0.1
3,268,915	-		CCNA_03122	0.16	+1.0
3,268,931	-		CCNA_03122	0.19	+1.4
3,268,931	-		CCNA_03122	0.19	-0.8
3,268,972	+		CCNA_03122	0.25	+0.2
3,268,987	-		CCNA_03122	0.27	-0.4
3,269,010	-		CCNA_03122	0.30	+0.1
3,269,017	+		CCNA_03122	0.31	+0.2
3,269,025	-		CCNA_03122	0.33	+1.5
3,269,040	-		CCNA_03122	0.35	+0.4
3,269,045	-		CCNA_03122	0.36	+0.7
3,269,054	+		CCNA_03122	0.37	-0.1
3,269,059	+		CCNA_03122	0.38	+0.3
3,269,062	-		CCNA_03122	0.38	-0.8
3,269,068	-		CCNA_03122	0.39	+0.6
3,269,071	+		CCNA_03122	0.39	-0.8
3,269,071	+		CCNA_03122	0.39	-0.3
3,269,074	-		CCNA_03122	0.40	+0.5
3,269,076	+		CCNA_03122	0.40	-0.5
3,269,079	-		CCNA_03122	0.41	+0.7
3,269,081	+		CCNA_03122	0.41	-1.1
3,269,081	+		CCNA_03122	0.41	+1.1
3,269,089	-		CCNA_03122	0.42	+0.6
3,269,089	-		CCNA_03122	0.42	+0.0
3,269,092	+		CCNA_03122	0.42	-0.5
3,269,092	+		CCNA_03122	0.42	-1.6
3,269,092	+		CCNA_03122	0.42	-1.1
3,269,092	+		CCNA_03122	0.42	+0.2
3,269,100	-		CCNA_03122	0.44	-0.1
3,269,100	-		CCNA_03122	0.44	+0.2
3,269,100	-		CCNA_03122	0.44	-0.4
3,269,100	-		CCNA_03122	0.44	-0.7
3,269,100	-		CCNA_03122	0.44	+1.5
3,269,105	-		CCNA_03122	0.44	+0.3
3,269,129	+		CCNA_03122	0.48	+0.4
3,269,130	+		CCNA_03122	0.48	-1.1
3,269,139	+		CCNA_03122	0.49	+1.3
3,269,144	+		CCNA_03122	0.50	-0.7
3,269,144	+		CCNA_03122	0.50	-1.3
3,269,152	-		CCNA_03122	0.51	-0.6
3,269,152	-		CCNA_03122	0.51	+0.3
3,269,155	+		CCNA_03122	0.52	+1.3
3,269,162	-		CCNA_03122	0.53	+0.2
3,269,162	-		CCNA_03122	0.53	+0.1
3,269,162	-		CCNA_03122	0.53	+0.6
3,269,177	-		CCNA_03122	0.55	-0.1
3,269,199	-		CCNA_03122	0.58	-0.2
3,269,199	-		CCNA_03122	0.58	+1.2
3,269,217	+		CCNA_03122	0.61	-0.9
3,269,225	-		CCNA_03122	0.62	+0.2
3,269,255	-		CCNA_03122	0.67	+0.8
3,269,266	-		CCNA_03122	0.68	+0.2
3,269,266	-		CCNA_03122	0.68	+1.2
3,269,266	-		CCNA_03122	0.68	-0.2
3,269,269	+		CCNA_03122	0.69	+0.0
3,269,269	+		CCNA_03122	0.69	+0.0
3,269,430	-				+1.7
3,269,462	-				+0.3
3,269,462	-				+0.1
3,269,472	-				+0.7
3,269,474	-				-0.4
3,269,505	+		CCNA_03123	0.10	+0.9
3,269,505	+		CCNA_03123	0.10	+0.0
3,269,513	-		CCNA_03123	0.13	+1.7
3,269,513	-		CCNA_03123	0.13	+2.1
3,269,513	-		CCNA_03123	0.13	+1.9
3,269,513	-		CCNA_03123	0.13	+2.0
3,269,513	-		CCNA_03123	0.13	+1.6
3,269,513	-		CCNA_03123	0.13	+1.9
3,269,513	-		CCNA_03123	0.13	+2.0
3,269,513	-		CCNA_03123	0.13	+1.7
3,269,513	-		CCNA_03123	0.13	+2.0
3,269,513	-		CCNA_03123	0.13	+1.6
3,269,513	-		CCNA_03123	0.13	+1.8
3,269,513	-		CCNA_03123	0.13	+1.8
3,269,513	-		CCNA_03123	0.13	+1.4
3,269,513	-		CCNA_03123	0.13	+2.0
3,269,539	-		CCNA_03123	0.22	+1.9
3,269,572	-		CCNA_03123	0.33	+2.7
3,269,632	-		CCNA_03123	0.53	+2.5
3,269,723	+		CCNA_03123	0.84	-1.3
3,269,759	-				+1.0
3,269,759	-				+2.1
3,269,759	-				+2.1
3,269,765	+				+2.3
3,269,776	-				+1.1
3,269,869	-				-1.0
3,269,892	-				-0.7
3,269,910	+				-2.5
3,269,910	+				+0.0
3,269,910	+				-0.6
3,269,910	+				+0.1
3,269,918	-				+1.5
3,269,918	-				+0.3
3,269,918	-				-0.9
3,269,918	-				+1.3
3,269,918	-				-0.6
3,269,924	+				-0.1
3,269,932	-				-0.6
3,269,932	-				+0.7
3,269,933	+				+0.2
3,269,941	-				-1.4
3,269,979	+				-1.3
3,269,979	+				+1.6
3,269,987	-				-0.8
3,269,987	-				-0.1
3,269,987	-				-0.8
3,269,990	+				-1.6
3,269,990	+				-1.8
3,269,998	-				+0.2
3,270,018	+		CCNA_03124	0.11	-0.8
3,270,018	+		CCNA_03124	0.11	-1.6
3,270,018	+		CCNA_03124	0.11	+1.1
3,270,018	+		CCNA_03124	0.11	-0.6
3,270,038	+		CCNA_03124	0.13	+0.7
3,270,071	-		CCNA_03124	0.16	-0.3
3,270,103	+		CCNA_03124	0.19	+1.4
3,270,110	+		CCNA_03124	0.19	+0.0
3,270,137	+		CCNA_03124	0.22	+0.2
3,270,138	+		CCNA_03124	0.22	-0.8
3,270,149	+		CCNA_03124	0.23	+0.5
3,270,163	-		CCNA_03124	0.24	-0.3
3,270,170	+		CCNA_03124	0.25	+1.0
3,270,179	-		CCNA_03124	0.26	-1.5
3,270,211	+		CCNA_03124	0.28	-3.6
3,270,211	+		CCNA_03124	0.28	+0.3
3,270,219	-		CCNA_03124	0.29	-0.4
3,270,235	-		CCNA_03124	0.31	-1.6
3,270,259	-		CCNA_03124	0.33	+0.0
3,270,259	-		CCNA_03124	0.33	+0.7
3,270,261	+		CCNA_03124	0.33	+1.2
3,270,261	+		CCNA_03124	0.33	-0.8
3,270,261	+		CCNA_03124	0.33	-0.4
3,270,261	+		CCNA_03124	0.33	-0.3
3,270,269	-		CCNA_03124	0.34	+0.7
3,270,269	-		CCNA_03124	0.34	-1.6
3,270,269	-		CCNA_03124	0.34	-0.2
3,270,269	-		CCNA_03124	0.34	-0.8
3,270,271	-		CCNA_03124	0.34	-0.6
3,270,295	+		CCNA_03124	0.36	+1.9
3,270,303	-		CCNA_03124	0.37	+0.8
3,270,363	+		CCNA_03124	0.42	+0.3
3,270,363	+		CCNA_03124	0.42	+0.4
3,270,363	-		CCNA_03124	0.42	-0.4
3,270,377	-		CCNA_03124	0.44	-1.6
3,270,392	-		CCNA_03124	0.45	-0.1
3,270,402	+		CCNA_03124	0.46	+0.1
3,270,423	+		CCNA_03124	0.48	+0.5
3,270,433	+		CCNA_03124	0.49	+0.5
3,270,433	+		CCNA_03124	0.49	-0.5
3,270,433	+		CCNA_03124	0.49	+0.1
3,270,433	+		CCNA_03124	0.49	+0.2
3,270,433	+		CCNA_03124	0.49	-1.2
3,270,433	+		CCNA_03124	0.49	-0.3
3,270,441	-		CCNA_03124	0.49	+1.0
3,270,441	-		CCNA_03124	0.49	+1.4
3,270,455	+		CCNA_03124	0.51	+0.1
3,270,457	+		CCNA_03124	0.51	+0.2
3,270,463	-		CCNA_03124	0.51	+0.3
3,270,486	+		CCNA_03124	0.53	-0.5
3,270,486	+		CCNA_03124	0.53	+1.6
3,270,533	-		CCNA_03124	0.58	+0.1
3,270,559	+		CCNA_03124	0.60	+0.1
3,270,560	+		CCNA_03124	0.60	+0.0
3,270,569	+		CCNA_03124	0.61	-0.3
3,270,569	+		CCNA_03124	0.61	-0.2
3,270,569	+		CCNA_03124	0.61	-0.8
3,270,577	-		CCNA_03124	0.62	+0.4
3,270,596	+		CCNA_03124	0.63	-1.1
3,270,665	-		CCNA_03124	0.70	-1.6
3,270,665	-				+2.3
3,270,665	-		CCNA_03124	0.70	+0.6
3,270,668	-		CCNA_03124	0.70	-0.5
3,270,707	+		CCNA_03124	0.73	-0.4