Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03050

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
3,203,629	+		CCNA_03049	0.42	-0.1
3,203,665	-		CCNA_03049	0.44	+0.3
3,203,666	+		CCNA_03049	0.44	-0.7
3,203,695	-		CCNA_03049	0.46	-2.6
3,203,726	-		CCNA_03049	0.48	+0.5
3,203,812	-		CCNA_03049	0.54	+0.7
3,203,814	+		CCNA_03049	0.54	+0.1
3,203,824	-		CCNA_03049	0.55	-0.7
3,203,835	-		CCNA_03049	0.56	-1.1
3,203,846	-		CCNA_03049	0.56	-2.2
3,203,918	-		CCNA_03049	0.61	+0.3
3,203,928	-		CCNA_03049	0.62	-2.5
3,203,940	-		CCNA_03049	0.63	-1.1
3,203,949	+		CCNA_03049	0.63	-0.1
3,203,949	+		CCNA_03049	0.63	-1.5
3,203,957	-		CCNA_03049	0.64	+0.4
3,203,957	-		CCNA_03049	0.64	-1.1
3,203,957	-		CCNA_03049	0.64	-0.7
3,203,957	-		CCNA_03049	0.64	-0.8
3,203,970	+		CCNA_03049	0.65	-0.2
3,203,970	+		CCNA_03049	0.65	+0.3
3,203,971	-				+1.3
3,203,978	-		CCNA_03049	0.65	-1.4
3,203,981	+		CCNA_03049	0.66	-0.9
3,204,002	-		CCNA_03049	0.67	+0.3
3,204,009	+		CCNA_03049	0.67	-0.8
3,204,009	-		CCNA_03049	0.67	-0.4
3,204,014	-		CCNA_03049	0.68	-0.8
3,204,027	+		CCNA_03049	0.69	-0.6
3,204,027	+		CCNA_03049	0.69	-0.4
3,204,027	+		CCNA_03049	0.69	+0.1
3,204,027	+		CCNA_03049	0.69	-0.2
3,204,035	-		CCNA_03049	0.69	+1.0
3,204,035	-		CCNA_03049	0.69	+0.1
3,204,035	-		CCNA_03049	0.69	-2.6
3,204,094	+		CCNA_03049	0.73	+1.5
3,204,100	-		CCNA_03049	0.74	+0.7
3,204,104	+		CCNA_03049	0.74	-2.5
3,204,134	+		CCNA_03049	0.76	-0.3
3,204,143	-		CCNA_03049	0.77	-1.4
3,204,160	+		CCNA_03049	0.78	+1.9
3,204,215	+		CCNA_03049	0.82	-2.5
3,204,223	-		CCNA_03049	0.82	-1.7
3,204,253	+		CCNA_03049	0.84	-2.0
3,204,323	+		CCNA_03049	0.89	-1.4
3,204,331	-		CCNA_03049	0.89	-1.9
3,204,342	-				-0.1
3,204,352	+				-0.6
3,204,352	+				+1.2
3,204,357	+				-2.1
3,204,360	-				-1.0
3,204,367	+				-0.6
3,204,367	+				+0.5
3,204,367	+				-1.0
3,204,367	+				-2.3
3,204,416	+				+1.0
3,204,435	+				-0.1
3,204,443	-				-1.5
3,204,480	-				+0.6
3,204,487	-				+1.0
3,204,561	+				+0.1
3,204,566	+				+0.4
3,204,569	-				+0.2
3,204,569	-				+3.3
3,204,584	-				-0.0
3,204,586	+				-1.6
3,204,602	+				-0.7
3,204,602	+				-1.3
3,204,602	+				-0.5
3,204,602	+				-0.7
3,204,602	+				+0.7
3,204,602	+				-0.7
3,204,603	-				+0.3
3,204,610	-				+2.7
3,204,610	-				+1.4
3,204,610	-				+0.8
3,204,610	-				+0.0
3,204,610	-				+1.3
3,204,610	-				+1.0
3,204,610	-				+1.0
3,204,610	-				+1.0
3,204,619	+				-0.6
3,204,627	-				+1.3
3,204,663	+				-1.1
3,204,688	-				+1.0
3,204,788	+		CCNA_03050	0.22	+0.6
3,204,803	+		CCNA_03050	0.24	-1.1
3,204,839	+		CCNA_03050	0.28	-2.4
3,204,839	+		CCNA_03050	0.28	-0.2
3,204,839	+		CCNA_03050	0.28	-0.9
3,204,878	-		CCNA_03050	0.33	-0.9
3,204,942	+		CCNA_03050	0.41	-1.4
3,204,963	+		CCNA_03050	0.44	-1.2
3,204,968	+		CCNA_03050	0.45	-0.4
3,204,971	-		CCNA_03050	0.45	-1.0
3,204,981	-		CCNA_03050	0.47	-2.3
3,204,990	-		CCNA_03050	0.48	-1.0
3,205,006	+		CCNA_03050	0.50	-0.3
3,205,030	+		CCNA_03050	0.53	+0.7
3,205,061	-		CCNA_03050	0.57	-0.1
3,205,061	-		CCNA_03050	0.57	-0.9
3,205,076	-		CCNA_03050	0.59	+0.3
3,205,076	-		CCNA_03050	0.59	-2.0
3,205,091	+		CCNA_03050	0.61	-1.8
3,205,109	+		CCNA_03050	0.63	-1.0
3,205,113	+		CCNA_03050	0.64	-0.8
3,205,213	-		CCNA_03050	0.76	-0.7
3,205,213	-		CCNA_03050	0.76	-0.9
3,205,234	+		CCNA_03050	0.79	-1.4
3,205,256	-		CCNA_03050	0.82	+0.8
3,205,263	+		CCNA_03050	0.83	+0.2
3,205,271	-		CCNA_03050	0.84	-0.3
3,205,277	+		CCNA_03050	0.85	+0.0
3,205,299	+		CCNA_03050	0.88	-0.6
3,205,379	+				-0.4
3,205,379	+				-0.5
3,205,390	+				+0.1
3,205,397	-				-0.7
3,205,397	-				+0.8
3,205,397	-				-0.3
3,205,483	+				+0.5
3,205,483	+				-0.3
3,205,483	+				+0.9
3,205,483	+				+1.0
3,205,483	+				+1.0
3,205,483	+				+0.9
3,205,491	-				-0.2
3,205,491	-				+0.1
3,205,491	-				-0.7
3,205,491	-				-1.0
3,205,491	-				+0.2
3,205,504	+				+1.2
3,205,504	+				-1.1
3,205,504	+				-2.0
3,205,504	+				-0.4
3,205,512	-				+0.3
3,205,523	+				+1.4
3,205,587	-				-0.1
3,205,642	+		CCNA_03051	0.17	+0.6
3,205,642	+		CCNA_03051	0.17	-1.5
3,205,649	+		CCNA_03051	0.19	-0.2
3,205,649	+		CCNA_03051	0.19	+1.7
3,205,649	+		CCNA_03051	0.19	-0.5
3,205,649	+		CCNA_03051	0.19	+2.8
3,205,649	+		CCNA_03051	0.19	-2.0
3,205,649	+		CCNA_03051	0.19	+0.3
3,205,649	+		CCNA_03051	0.19	-1.4
3,205,654	+		CCNA_03051	0.20	+1.1
3,205,657	-				+1.7
3,205,657	-		CCNA_03051	0.21	-0.2
3,205,683	+		CCNA_03051	0.28	-1.7
3,205,685	-				+4.3
3,205,712	-		CCNA_03051	0.35	-0.8
3,205,713	+		CCNA_03051	0.35	-1.2
3,205,733	+		CCNA_03051	0.40	-1.2
3,205,746	+		CCNA_03051	0.43	-0.1
3,205,781	-		CCNA_03051	0.52	-0.1
3,205,829	-		CCNA_03051	0.64	+0.1
3,205,836	-		CCNA_03051	0.66	+0.6
3,205,836	-		CCNA_03051	0.66	+0.1
3,205,870	-		CCNA_03051	0.74	+2.3
3,205,890	-		CCNA_03051	0.79	+1.2
3,205,908	+		CCNA_03051	0.84	-0.1
3,205,916	-		CCNA_03051	0.86	+0.5
3,205,938	+				+1.6
3,205,956	+				-0.0
3,205,956	+				-0.3
3,205,956	+				-1.8
3,206,009	+				+0.4
3,206,009	+				+0.1
3,206,009	+				+1.6
3,206,017	-				+0.9
3,206,142	-				+0.1
3,206,152	-				+1.0
3,206,267	-				-2.0
3,206,356	-		CCNA_03052	0.15	+0.1
3,206,372	-		CCNA_03052	0.17	-0.2
3,206,394	-		CCNA_03052	0.19	-2.5