Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02297

Experiment: PYE with Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02296 and CCNA_02297 are separated by 138 nucleotidesCCNA_02297 and CCNA_02298 overlap by 59 nucleotidesCCNA_02298 and CCNA_02299 are separated by 58 nucleotides CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141 _02296 CCNA_02297: CCNA_02297 - hypoxanthine-guanine phosphoribosyltransferase, at 2,444,280 to 2,444,861 _02297 CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762 _02298 CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528 _02299 Position (kb) 2444 2445Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2443.582 kb on + strand, within CCNA_02296at 2443.715 kb on + strand, within CCNA_02296at 2444.154 kb on - strandat 2444.202 kb on - strandat 2444.215 kb on + strandat 2444.223 kb on - strandat 2444.304 kb on - strandat 2444.387 kb on - strand, within CCNA_02297at 2444.448 kb on - strand, within CCNA_02297at 2444.481 kb on - strand, within CCNA_02297at 2444.509 kb on + strand, within CCNA_02297at 2444.578 kb on - strand, within CCNA_02297at 2444.606 kb on + strand, within CCNA_02297at 2444.640 kb on - strand, within CCNA_02297at 2444.646 kb on - strand, within CCNA_02297at 2444.650 kb on + strand, within CCNA_02297at 2444.655 kb on + strand, within CCNA_02297at 2444.661 kb on - strand, within CCNA_02297at 2444.691 kb on - strand, within CCNA_02297at 2444.697 kb on + strand, within CCNA_02297at 2444.705 kb on - strand, within CCNA_02297at 2444.771 kb on - strand, within CCNA_02297at 2444.791 kb on + strand, within CCNA_02297at 2444.837 kb on - strandat 2444.865 kb on - strandat 2444.871 kb on + strandat 2444.895 kb on + strandat 2444.954 kb on + strand, within CCNA_02298at 2444.971 kb on + strand, within CCNA_02298at 2445.119 kb on - strand, within CCNA_02298at 2445.132 kb on - strand, within CCNA_02298at 2445.147 kb on - strand, within CCNA_02298at 2445.178 kb on - strand, within CCNA_02298at 2445.195 kb on - strand, within CCNA_02298at 2445.195 kb on - strand, within CCNA_02298at 2445.200 kb on - strand, within CCNA_02298at 2445.226 kb on + strand, within CCNA_02298at 2445.238 kb on + strand, within CCNA_02298at 2445.245 kb on + strand, within CCNA_02298at 2445.245 kb on + strand, within CCNA_02298at 2445.246 kb on - strand, within CCNA_02298at 2445.273 kb on + strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.339 kb on + strand, within CCNA_02298at 2445.355 kb on + strand, within CCNA_02298at 2445.363 kb on - strand, within CCNA_02298at 2445.408 kb on - strand, within CCNA_02298at 2445.508 kb on + strand, within CCNA_02298at 2445.595 kb on - strand, within CCNA_02298at 2445.607 kb on + strand, within CCNA_02298at 2445.614 kb on - strand, within CCNA_02298at 2445.615 kb on - strand, within CCNA_02298at 2445.691 kb on - strandat 2445.717 kb on + strandat 2445.735 kb on - strandat 2445.831 kb on + strandat 2445.836 kb on + strandat 2445.841 kb on + strandat 2445.844 kb on - strandat 2445.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml
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2,443,582 + CCNA_02296 0.56 +0.7
2,443,715 + CCNA_02296 0.66 +1.8
2,444,154 - -0.6
2,444,202 - -0.0
2,444,215 + -1.4
2,444,223 - -1.0
2,444,304 - +1.2
2,444,387 - CCNA_02297 0.18 +1.6
2,444,448 - CCNA_02297 0.29 +0.3
2,444,481 - CCNA_02297 0.35 +1.0
2,444,509 + CCNA_02297 0.39 +0.5
2,444,578 - CCNA_02297 0.51 +1.3
2,444,606 + CCNA_02297 0.56 +1.1
2,444,640 - CCNA_02297 0.62 +3.1
2,444,646 - CCNA_02297 0.63 +1.6
2,444,650 + CCNA_02297 0.64 +0.4
2,444,655 + CCNA_02297 0.64 -0.3
2,444,661 - CCNA_02297 0.65 +1.4
2,444,691 - CCNA_02297 0.71 +1.1
2,444,697 + CCNA_02297 0.72 -1.8
2,444,705 - CCNA_02297 0.73 +1.0
2,444,771 - CCNA_02297 0.84 +1.2
2,444,791 + CCNA_02297 0.88 -0.7
2,444,837 - +0.7
2,444,865 - +0.4
2,444,871 + +0.1
2,444,895 + -0.8
2,444,954 + CCNA_02298 0.16 +0.3
2,444,971 + CCNA_02298 0.17 -0.7
2,445,119 - CCNA_02298 0.33 -0.3
2,445,132 - CCNA_02298 0.34 +0.3
2,445,147 - CCNA_02298 0.36 +0.3
2,445,178 - CCNA_02298 0.39 +0.7
2,445,195 - CCNA_02298 0.41 +1.0
2,445,195 - CCNA_02298 0.41 +0.3
2,445,200 - CCNA_02298 0.41 +1.1
2,445,226 + CCNA_02298 0.44 -0.4
2,445,238 + CCNA_02298 0.45 -1.1
2,445,245 + CCNA_02298 0.46 -0.8
2,445,245 + CCNA_02298 0.46 -2.5
2,445,246 - CCNA_02298 0.46 +0.4
2,445,273 + CCNA_02298 0.49 -1.0
2,445,281 - CCNA_02298 0.50 +0.7
2,445,281 - CCNA_02298 0.50 +0.3
2,445,281 - CCNA_02298 0.50 +0.8
2,445,281 - CCNA_02298 0.50 +1.3
2,445,281 - CCNA_02298 0.50 +0.1
2,445,339 + CCNA_02298 0.56 -0.9
2,445,355 + CCNA_02298 0.57 +1.7
2,445,363 - CCNA_02298 0.58 +0.7
2,445,408 - CCNA_02298 0.63 +0.8
2,445,508 + CCNA_02298 0.73 +1.5
2,445,595 - CCNA_02298 0.82 +0.2
2,445,607 + CCNA_02298 0.84 -0.8
2,445,614 - CCNA_02298 0.84 +0.4
2,445,615 - CCNA_02298 0.85 +1.3
2,445,691 - +1.3
2,445,717 + +1.0
2,445,735 - +0.4
2,445,831 + -0.4
2,445,836 + +1.1
2,445,841 + -0.6
2,445,844 - -1.8
2,445,844 - -1.5

Or see this region's nucleotide sequence