Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01368

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
1,482,422	-		CCNA_01367	0.10	-0.2
1,482,495	+		CCNA_01367	0.18	+0.2
1,482,502	+		CCNA_01367	0.19	+1.5
1,482,525	+		CCNA_01367	0.22	+1.2
1,482,527	+		CCNA_01367	0.22	-1.1
1,482,533	-		CCNA_01367	0.23	+0.1
1,482,535	-		CCNA_01367	0.23	-1.9
1,482,605	+		CCNA_01367	0.31	+1.4
1,482,619	+		CCNA_01367	0.32	+0.5
1,482,619	+		CCNA_01367	0.32	-0.4
1,482,619	+		CCNA_01367	0.32	+0.6
1,482,619	+		CCNA_01367	0.32	-0.7
1,482,619	+		CCNA_01367	0.32	+0.5
1,482,619	+		CCNA_01367	0.32	+0.1
1,482,627	-		CCNA_01367	0.33	-1.7
1,482,683	-		CCNA_01367	0.40	+0.7
1,482,684	-		CCNA_01367	0.40	+0.6
1,482,684	-		CCNA_01367	0.40	-0.9
1,482,684	-		CCNA_01367	0.40	-1.2
1,482,732	+		CCNA_01367	0.45	-0.4
1,482,745	+		CCNA_01367	0.46	+0.6
1,482,811	-		CCNA_01367	0.54	-0.6
1,482,813	+		CCNA_01367	0.54	+0.1
1,482,826	+		CCNA_01367	0.56	+0.1
1,482,834	-		CCNA_01367	0.56	+2.2
1,482,834	-		CCNA_01367	0.56	+2.6
1,482,836	+		CCNA_01367	0.57	+1.4
1,482,836	+		CCNA_01367	0.57	+0.4
1,482,844	-		CCNA_01367	0.58	+1.8
1,482,844	-		CCNA_01367	0.58	-1.3
1,482,845	+		CCNA_01367	0.58	+1.3
1,482,845	+		CCNA_01367	0.58	+0.7
1,482,853	-		CCNA_01367	0.59	+1.1
1,482,888	+		CCNA_01367	0.63	+1.0
1,482,888	+		CCNA_01367	0.63	+1.6
1,482,895	+		CCNA_01367	0.63	+0.3
1,482,896	-		CCNA_01367	0.63	+0.7
1,482,956	+		CCNA_01367	0.70	-0.9
1,482,976	+		CCNA_01367	0.72	-0.2
1,483,002	+		CCNA_01367	0.75	+0.7
1,483,033	+		CCNA_01367	0.79	+1.5
1,483,042	+		CCNA_01367	0.80	+1.4
1,483,042	+		CCNA_01367	0.80	-0.1
1,483,050	-		CCNA_01367	0.81	-2.0
1,483,050	-		CCNA_01367	0.81	-0.9
1,483,080	+		CCNA_01367	0.84	+0.3
1,483,080	+		CCNA_01367	0.84	+1.3
1,483,085	+		CCNA_01367	0.85	+1.3
1,483,135	+				+1.1
1,483,143	-				-1.1
1,483,154	+				+1.3
1,483,191	-				-1.0
1,483,194	+				-2.3
1,483,194	+				+0.9
1,483,194	+				-0.0
1,483,194	+				+0.2
1,483,194	+				+0.0
1,483,194	+				-1.7
1,483,202	-				+0.3
1,483,202	-				-0.2
1,483,202	-				-2.2
1,483,202	-				-1.8
1,483,202	-				-1.0
1,483,308	+				+0.9
1,483,326	+				+1.2
1,483,349	-				+1.1
1,483,454	-				-0.6
1,483,464	+				-0.4
1,483,468	+				+0.2
1,483,472	-				-2.2
1,483,503	-		CCNA_01368	0.11	-0.4
1,483,564	-		CCNA_01368	0.16	-2.3
1,483,568	+		CCNA_01368	0.16	-0.1
1,483,574	+		CCNA_01368	0.17	+1.1
1,483,581	+		CCNA_01368	0.17	+1.7
1,483,581	-		CCNA_01368	0.17	-1.6
1,483,581	-		CCNA_01368	0.17	-0.6
1,483,589	-		CCNA_01368	0.18	-2.4
1,483,600	-		CCNA_01368	0.19	-0.9
1,483,672	+		CCNA_01368	0.25	+1.2
1,483,680	+		CCNA_01368	0.25	-0.5
1,483,695	+		CCNA_01368	0.27	-0.9
1,483,714	+		CCNA_01368	0.28	+1.2
1,483,727	-		CCNA_01368	0.29	-0.1
1,483,738	-		CCNA_01368	0.30	-0.1
1,483,751	-		CCNA_01368	0.31	-0.2
1,483,758	-		CCNA_01368	0.32	-0.3
1,483,758	-		CCNA_01368	0.32	-1.4
1,483,772	+		CCNA_01368	0.33	-1.2
1,483,789	+		CCNA_01368	0.34	+1.4
1,483,795	+		CCNA_01368	0.35	-1.6
1,483,803	-		CCNA_01368	0.35	-0.7
1,483,803	-		CCNA_01368	0.35	-0.4
1,483,803	-		CCNA_01368	0.35	-0.1
1,483,803	-		CCNA_01368	0.35	-1.0
1,483,803	-		CCNA_01368	0.35	-1.2
1,483,832	+		CCNA_01368	0.38	+1.4
1,483,840	-		CCNA_01368	0.38	-0.7
1,483,841	-		CCNA_01368	0.39	-0.5
1,483,843	+		CCNA_01368	0.39	-0.2
1,483,843	+		CCNA_01368	0.39	+2.5
1,483,850	+		CCNA_01368	0.39	+0.9
1,483,867	-		CCNA_01368	0.41	-1.8
1,483,869	+		CCNA_01368	0.41	+0.6
1,483,874	+		CCNA_01368	0.41	+0.3
1,483,902	-		CCNA_01368	0.44	+0.8
1,483,903	+		CCNA_01368	0.44	+0.2
1,483,903	+		CCNA_01368	0.44	+0.0
1,483,916	-		CCNA_01368	0.45	-1.0
1,484,017	+		CCNA_01368	0.53	+1.6
1,484,017	+		CCNA_01368	0.53	-0.3
1,484,034	-		CCNA_01368	0.54	-1.0
1,484,041	+		CCNA_01368	0.55	-0.2
1,484,041	+		CCNA_01368	0.55	+0.1
1,484,072	+		CCNA_01368	0.58	-0.8
1,484,083	+		CCNA_01368	0.58	-0.2
1,484,084	+		CCNA_01368	0.59	+1.0
1,484,122	+		CCNA_01368	0.62	+0.5
1,484,136	+		CCNA_01368	0.63	-0.7
1,484,223	-		CCNA_01368	0.70	-0.7
1,484,251	+		CCNA_01368	0.72	+1.3
1,484,251	+		CCNA_01368	0.72	-0.1
1,484,259	-		CCNA_01368	0.73	-1.6
1,484,278	-		CCNA_01368	0.74	-0.6
1,484,283	-		CCNA_01368	0.75	-0.1
1,484,283	-		CCNA_01368	0.75	-0.7
1,484,288	-		CCNA_01368	0.75	-0.4
1,484,288	-		CCNA_01368	0.75	-0.1
1,484,288	-		CCNA_01368	0.75	+1.6
1,484,343	-		CCNA_01368	0.80	-1.3
1,484,349	+		CCNA_01368	0.80	+0.6
1,484,372	-		CCNA_01368	0.82	-1.1
1,484,405	+		CCNA_01368	0.85	+1.1
1,484,405	+		CCNA_01368	0.85	+0.6
1,484,469	+				+1.1
1,484,469	+				+1.6
1,484,476	-				+0.5
1,484,502	+				+1.0
1,484,510	+				+0.5
1,484,581	+				+1.0
1,484,609	+				+0.5
1,484,630	-				-0.3
1,484,630	-				-0.5
1,484,635	-				+0.5
1,484,667	+				+0.9
1,484,678	+				+0.6
1,484,822	-				-1.3
1,484,822	-				-1.8
1,484,841	+		CCNA_01369	0.11	+0.3
1,484,881	-		CCNA_01369	0.15	+0.7
1,484,894	+		CCNA_01369	0.16	+0.1
1,484,902	-		CCNA_01369	0.16	-1.1
1,484,937	+		CCNA_01369	0.20	+1.0
1,484,937	+		CCNA_01369	0.20	-1.9
1,484,993	-		CCNA_01369	0.24	-2.0
1,485,020	+		CCNA_01369	0.27	-0.1
1,485,077	+		CCNA_01369	0.32	-0.2
1,485,077	+		CCNA_01369	0.32	-0.2
1,485,077	+		CCNA_01369	0.32	+0.5
1,485,085	-		CCNA_01369	0.33	-1.7
1,485,095	+		CCNA_01369	0.33	-1.0
1,485,114	+		CCNA_01369	0.35	+0.5
1,485,114	+		CCNA_01369	0.35	+1.2
1,485,146	+		CCNA_01369	0.38	-0.4
1,485,237	-		CCNA_01369	0.46	+0.2
1,485,249	-		CCNA_01369	0.47	-0.3
1,485,280	-		CCNA_01369	0.50	-0.6
1,485,393	+		CCNA_01369	0.60	+0.1
1,485,393	+		CCNA_01369	0.60	-0.0
1,485,393	+		CCNA_01369	0.60	+0.8
1,485,397	+		CCNA_01369	0.60	+0.6
1,485,412	+		CCNA_01369	0.61	-0.5
1,485,412	+		CCNA_01369	0.61	+1.8
1,485,420	-		CCNA_01369	0.62	-0.5
1,485,420	-		CCNA_01369	0.62	-0.6
1,485,420	-		CCNA_01369	0.62	-1.5
1,485,424	+		CCNA_01369	0.62	+0.6
1,485,457	-		CCNA_01369	0.65	-1.9
1,485,480	-		CCNA_01369	0.67	-1.1
1,485,482	+		CCNA_01369	0.67	+1.2
1,485,482	+		CCNA_01369	0.67	+0.6
1,485,482	+		CCNA_01369	0.67	+0.8
1,485,487	+		CCNA_01369	0.68	+0.6
1,485,487	+		CCNA_01369	0.68	+0.5
1,485,487	+		CCNA_01369	0.68	+0.1
1,485,487	+		CCNA_01369	0.68	-0.3
1,485,490	-		CCNA_01369	0.68	-0.8
1,485,490	-		CCNA_01369	0.68	-1.6
1,485,492	+		CCNA_01369	0.68	+1.7
1,485,500	-		CCNA_01369	0.69	+1.6
1,485,500	-		CCNA_01369	0.69	+1.5
1,485,511	+		CCNA_01369	0.70	+3.6
1,485,540	-		CCNA_01369	0.72	-1.3
1,485,542	+		CCNA_01369	0.73	+0.2