Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01339

Experiment: PYE with Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.0001 mg/ml
1,451,270	+		CCNA_01337	0.72	+2.8
1,451,270	+		CCNA_01337	0.72	+0.4
1,451,278	-		CCNA_01337	0.72	-0.4
1,451,298	-		CCNA_01337	0.73	-0.4
1,451,303	+		CCNA_01337	0.74	+1.3
1,451,305	+		CCNA_01337	0.74	-0.7
1,451,311	-		CCNA_01337	0.74	-1.7
1,451,349	-		CCNA_01337	0.76	+0.2
1,451,374	-		CCNA_01337	0.78	-1.1
1,451,392	+		CCNA_01337	0.79	+0.8
1,451,392	-		CCNA_01337	0.79	+0.4
1,451,466	+		CCNA_01337	0.84	+3.3
1,451,474	-		CCNA_01337	0.84	-0.8
1,451,474	-		CCNA_01337	0.84	+0.2
1,451,474	-		CCNA_01337	0.84	-2.0
1,451,489	+		CCNA_01337	0.85	+0.0
1,451,534	-		CCNA_01337	0.88	-0.1
1,451,555	+		CCNA_01337	0.89	+0.5
1,451,586	+				-1.0
1,451,616	+				-0.1
1,451,681	+				+0.1
1,451,835	+				+0.5
1,451,837	-				-1.1
1,451,856	+		CCNA_01338	0.12	+1.3
1,451,856	+		CCNA_01338	0.12	+1.1
1,451,869	-		CCNA_01338	0.15	+0.2
1,451,874	-		CCNA_01338	0.16	-0.6
1,451,937	+		CCNA_01338	0.30	+0.3
1,451,945	+		CCNA_01338	0.31	-0.2
1,451,978	+		CCNA_01338	0.39	+0.7
1,451,983	+		CCNA_01338	0.40	+1.2
1,451,983	+		CCNA_01338	0.40	+1.6
1,451,986	-		CCNA_01338	0.40	-0.3
1,451,988	+		CCNA_01338	0.41	+1.9
1,451,991	-		CCNA_01338	0.41	+1.4
1,452,117	+		CCNA_01338	0.69	+2.0
1,452,120	+		CCNA_01338	0.70	+1.8
1,452,122	+		CCNA_01338	0.70	+0.9
1,452,137	+		CCNA_01338	0.73	+0.7
1,452,139	+		CCNA_01338	0.74	+0.7
1,452,167	+		CCNA_01338	0.80	-0.7
1,452,167	+		CCNA_01338	0.80	+0.8
1,452,167	+		CCNA_01338	0.80	+0.6
1,452,167	+		CCNA_01338	0.80	+1.9
1,452,167	+		CCNA_01338	0.80	+2.0
1,452,167	+		CCNA_01338	0.80	+0.9
1,452,175	-		CCNA_01338	0.82	+1.0
1,452,177	+		CCNA_01338	0.82	+2.5
1,452,196	-		CCNA_01338	0.86	-1.2
1,452,254	-				+0.8
1,452,263	+				+2.0
1,452,263	+				+2.6
1,452,263	+				+2.2
1,452,271	-				+2.0
1,452,271	-				+3.3
1,452,284	+				+2.1
1,452,368	+		CCNA_01339	0.35	+2.0
1,452,368	+		CCNA_01339	0.35	+2.1
1,452,390	+		CCNA_01339	0.41	+1.3
1,452,405	+		CCNA_01339	0.46	+1.8
1,452,424	+		CCNA_01339	0.52	+2.0
1,452,425	+		CCNA_01339	0.52	+1.9
1,452,428	+		CCNA_01339	0.53	+2.8
1,452,433	+		CCNA_01339	0.54	+1.6
1,452,446	+		CCNA_01339	0.58	+1.6
1,452,471	-		CCNA_01339	0.66	-1.1
1,452,496	+		CCNA_01339	0.73	+2.3
1,452,504	-				+1.3
1,452,508	+		CCNA_01339	0.77	+0.3
1,452,516	-		CCNA_01339	0.79	-2.2
1,452,526	+		CCNA_01339	0.82	-0.2
1,452,541	+		CCNA_01339	0.87	+0.7
1,452,541	+		CCNA_01339	0.87	+0.7
1,452,549	-		CCNA_01339	0.89	-1.5
1,452,568	+				+1.3
1,452,576	-				-0.7
1,452,593	-				+0.6
1,452,628	+				+0.3
1,452,628	+				+1.1
1,452,636	-		CCNA_03880	0.11	+0.9
1,452,697	-		CCNA_03880	0.24	-0.9
1,452,719	+		CCNA_03880	0.28	-1.0
1,452,738	+		CCNA_03880	0.32	+0.4
1,452,744	+		CCNA_03880	0.33	+0.5
1,452,785	+		CCNA_03880	0.41	-1.8
1,452,788	+		CCNA_03880	0.42	-0.8
1,452,823	+		CCNA_03880	0.49	+0.9
1,452,846	+				+3.3
1,452,854	-		CCNA_03880	0.55	-0.7
1,452,886	+		CCNA_03880	0.62	+2.2
1,452,902	+		CCNA_03880	0.65	+0.0
1,452,910	-		CCNA_03880	0.67	-0.4
1,452,949	+		CCNA_03880	0.75	+0.1
1,452,950	-		CCNA_03880	0.75	-0.2
1,452,955	+		CCNA_03880	0.76	-0.5
1,453,005	+		CCNA_03880	0.86	-2.5
1,453,006	+		CCNA_03880	0.86	+0.5
1,453,029	+				-1.1
1,453,029	+				-1.1
1,453,029	+				+1.5
1,453,029	+				+1.3
1,453,029	+				-0.2
1,453,037	-				+0.5
1,453,037	-				-0.1
1,453,037	-				+0.1
1,453,043	+				+0.9
1,453,043	+				+2.4
1,453,051	-				+1.0
1,453,051	-				+1.3
1,453,056	-				-1.9
1,453,068	+				+0.9
1,453,071	-				-2.0
1,453,076	-				-0.2
1,453,076	-				+0.5
1,453,102	+				+0.0
1,453,151	-				-0.6
1,453,158	-				-2.6
1,453,164	-				+1.3
1,453,178	-				-0.4
1,453,224	+		CCNA_01340	0.12	-0.2
1,453,303	+		CCNA_01340	0.19	+0.0
1,453,369	+		CCNA_01340	0.24	+1.9
1,453,382	+		CCNA_01340	0.25	+0.2
1,453,392	-		CCNA_01340	0.26	-1.1
1,453,478	+		CCNA_01340	0.33	-0.2
1,453,498	-		CCNA_01340	0.34	-2.2
1,453,505	-		CCNA_01340	0.35	+0.6
1,453,505	-		CCNA_01340	0.35	+0.4
1,453,514	+		CCNA_01340	0.35	-1.8