Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00628

Experiment: PYE with Tetracycline 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00626 and CCNA_00627 are separated by 78 nucleotidesCCNA_00627 and CCNA_00628 are separated by 5 nucleotidesCCNA_00628 and CCNA_00629 are separated by 591 nucleotides CCNA_00626: CCNA_00626 - methyl-accepting chemotaxis protein, at 670,929 to 672,842 _00626 CCNA_00627: CCNA_00627 - hypothetical protein, at 672,921 to 673,382 _00627 CCNA_00628: CCNA_00628 - chemotaxis protein cheY, at 673,388 to 673,771 _00628 CCNA_00629: CCNA_00629 - methyl-accepting chemotaxis protein, at 674,363 to 676,249 _00629 Position (kb) 673 674Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 672.418 kb on + strand, within CCNA_00626at 672.418 kb on + strand, within CCNA_00626at 672.419 kb on - strand, within CCNA_00626at 672.430 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.440 kb on + strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.448 kb on - strand, within CCNA_00626at 672.496 kb on + strandat 672.504 kb on - strand, within CCNA_00626at 672.504 kb on - strand, within CCNA_00626at 672.515 kb on + strand, within CCNA_00626at 672.516 kb on + strand, within CCNA_00626at 672.523 kb on - strand, within CCNA_00626at 672.530 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.538 kb on + strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.546 kb on - strand, within CCNA_00626at 672.581 kb on + strand, within CCNA_00626at 672.602 kb on + strand, within CCNA_00626at 672.610 kb on - strand, within CCNA_00626at 672.614 kb on + strand, within CCNA_00626at 672.617 kb on - strand, within CCNA_00626at 672.627 kb on + strand, within CCNA_00626at 672.627 kb on + strand, within CCNA_00626at 672.627 kb on + strand, within CCNA_00626at 672.635 kb on - strand, within CCNA_00626at 672.635 kb on - strand, within CCNA_00626at 672.675 kb on - strandat 672.675 kb on - strandat 672.730 kb on + strandat 672.730 kb on + strandat 672.730 kb on + strandat 672.735 kb on + strandat 672.738 kb on - strandat 672.738 kb on - strandat 672.743 kb on - strandat 672.796 kb on - strandat 672.852 kb on + strandat 672.860 kb on - strandat 672.913 kb on + strandat 672.921 kb on - strandat 672.940 kb on + strandat 672.943 kb on - strandat 672.964 kb on - strandat 672.988 kb on - strand, within CCNA_00627at 673.076 kb on + strand, within CCNA_00627at 673.084 kb on - strand, within CCNA_00627at 673.084 kb on - strand, within CCNA_00627at 673.102 kb on + strand, within CCNA_00627at 673.103 kb on - strand, within CCNA_00627at 673.104 kb on - strand, within CCNA_00627at 673.110 kb on - strand, within CCNA_00627at 673.136 kb on - strand, within CCNA_00627at 673.136 kb on - strand, within CCNA_00627at 673.156 kb on - strand, within CCNA_00627at 673.193 kb on - strand, within CCNA_00627at 673.209 kb on - strand, within CCNA_00627at 673.210 kb on - strand, within CCNA_00627at 673.223 kb on - strand, within CCNA_00627at 673.236 kb on + strand, within CCNA_00627at 673.293 kb on - strand, within CCNA_00627at 673.293 kb on - strand, within CCNA_00627at 673.357 kb on + strandat 673.360 kb on - strandat 673.371 kb on - strandat 673.372 kb on - strandat 673.372 kb on - strandat 673.474 kb on + strand, within CCNA_00628at 673.490 kb on + strand, within CCNA_00628at 673.568 kb on - strand, within CCNA_00628at 673.615 kb on + strand, within CCNA_00628at 673.653 kb on - strand, within CCNA_00628at 673.759 kb on - strandat 673.779 kb on - strandat 673.794 kb on + strandat 673.833 kb on + strandat 673.964 kb on + strandat 674.113 kb on + strandat 674.250 kb on + strandat 674.250 kb on + strandat 674.250 kb on + strandat 674.258 kb on - strandat 674.266 kb on + strandat 674.273 kb on + strandat 674.283 kb on + strandat 674.283 kb on + strandat 674.283 kb on + strandat 674.296 kb on + strandat 674.301 kb on + strandat 674.309 kb on - strandat 674.314 kb on + strandat 674.336 kb on + strandat 674.345 kb on - strandat 674.352 kb on + strandat 674.373 kb on + strandat 674.410 kb on + strandat 674.526 kb on - strandat 674.541 kb on - strandat 674.560 kb on + strand, within CCNA_00629at 674.582 kb on + strand, within CCNA_00629at 674.588 kb on + strand, within CCNA_00629at 674.588 kb on + strand, within CCNA_00629at 674.590 kb on - strand, within CCNA_00629at 674.629 kb on - strand, within CCNA_00629at 674.666 kb on + strand, within CCNA_00629at 674.666 kb on + strand, within CCNA_00629at 674.674 kb on - strand, within CCNA_00629at 674.682 kb on + strand, within CCNA_00629at 674.682 kb on + strand, within CCNA_00629at 674.692 kb on + strand, within CCNA_00629at 674.723 kb on + strand, within CCNA_00629at 674.736 kb on + strand, within CCNA_00629at 674.736 kb on + strand, within CCNA_00629at 674.744 kb on - strand, within CCNA_00629at 674.767 kb on - strand, within CCNA_00629at 674.767 kb on - strand, within CCNA_00629at 674.767 kb on - strand, within CCNA_00629

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml
remove
672,418 + CCNA_00626 0.78 +0.5
672,418 + CCNA_00626 0.78 -1.2
672,419 - CCNA_00626 0.78 -1.3
672,430 + CCNA_00626 0.78 -0.5
672,440 + CCNA_00626 0.79 +1.0
672,440 + CCNA_00626 0.79 +0.3
672,440 + CCNA_00626 0.79 -1.5
672,440 + CCNA_00626 0.79 -0.1
672,440 + CCNA_00626 0.79 +0.1
672,440 + CCNA_00626 0.79 -0.4
672,440 + CCNA_00626 0.79 +1.9
672,440 + CCNA_00626 0.79 -0.7
672,440 + CCNA_00626 0.79 -0.5
672,440 + CCNA_00626 0.79 +0.1
672,440 + CCNA_00626 0.79 -1.1
672,440 + CCNA_00626 0.79 -1.1
672,448 - CCNA_00626 0.79 -0.6
672,448 - CCNA_00626 0.79 +0.7
672,448 - CCNA_00626 0.79 +0.0
672,448 - CCNA_00626 0.79 -1.4
672,448 - CCNA_00626 0.79 -1.5
672,448 - CCNA_00626 0.79 -0.8
672,448 - CCNA_00626 0.79 -1.7
672,448 - CCNA_00626 0.79 -0.2
672,448 - CCNA_00626 0.79 +0.1
672,448 - CCNA_00626 0.79 -1.4
672,496 + +0.9
672,504 - CCNA_00626 0.82 +1.7
672,504 - CCNA_00626 0.82 +1.1
672,515 + CCNA_00626 0.83 -0.4
672,516 + CCNA_00626 0.83 -1.5
672,523 - CCNA_00626 0.83 -0.3
672,530 + CCNA_00626 0.84 -0.0
672,538 + CCNA_00626 0.84 +0.4
672,538 + CCNA_00626 0.84 +0.6
672,538 + CCNA_00626 0.84 +1.4
672,538 + CCNA_00626 0.84 +0.7
672,538 + CCNA_00626 0.84 -1.8
672,538 + CCNA_00626 0.84 -0.1
672,538 + CCNA_00626 0.84 -2.1
672,538 + CCNA_00626 0.84 +0.3
672,538 + CCNA_00626 0.84 +1.7
672,546 - CCNA_00626 0.84 -0.4
672,546 - CCNA_00626 0.84 -0.5
672,546 - CCNA_00626 0.84 -1.1
672,546 - CCNA_00626 0.84 -1.4
672,546 - CCNA_00626 0.84 -0.5
672,546 - CCNA_00626 0.84 -1.3
672,546 - CCNA_00626 0.84 -0.4
672,546 - CCNA_00626 0.84 -1.8
672,546 - CCNA_00626 0.84 -2.2
672,581 + CCNA_00626 0.86 -1.3
672,602 + CCNA_00626 0.87 +0.4
672,610 - CCNA_00626 0.88 +0.5
672,614 + CCNA_00626 0.88 -0.1
672,617 - CCNA_00626 0.88 -0.6
672,627 + CCNA_00626 0.89 -0.0
672,627 + CCNA_00626 0.89 -1.2
672,627 + CCNA_00626 0.89 +0.5
672,635 - CCNA_00626 0.89 +0.2
672,635 - CCNA_00626 0.89 -2.5
672,675 - -1.4
672,675 - -0.6
672,730 + -0.2
672,730 + +1.4
672,730 + +0.1
672,735 + -0.0
672,738 - +0.4
672,738 - +0.4
672,743 - +0.1
672,796 - +2.4
672,852 + -0.1
672,860 - +0.4
672,913 + +0.3
672,921 - +0.1
672,940 + -1.1
672,943 - -1.9
672,964 - -0.5
672,988 - CCNA_00627 0.15 +0.7
673,076 + CCNA_00627 0.34 -0.3
673,084 - CCNA_00627 0.35 -0.9
673,084 - CCNA_00627 0.35 +1.0
673,102 + CCNA_00627 0.39 +1.3
673,103 - CCNA_00627 0.39 -0.2
673,104 - CCNA_00627 0.40 +0.5
673,110 - CCNA_00627 0.41 +0.2
673,136 - CCNA_00627 0.47 +0.1
673,136 - CCNA_00627 0.47 -0.7
673,156 - CCNA_00627 0.51 -0.5
673,193 - CCNA_00627 0.59 +0.0
673,209 - CCNA_00627 0.62 -1.7
673,210 - CCNA_00627 0.63 +0.0
673,223 - CCNA_00627 0.65 -1.1
673,236 + CCNA_00627 0.68 -0.1
673,293 - CCNA_00627 0.81 -0.7
673,293 - CCNA_00627 0.81 -1.0
673,357 + -0.8
673,360 - -0.3
673,371 - -0.5
673,372 - -1.0
673,372 - -1.6
673,474 + CCNA_00628 0.22 -0.3
673,490 + CCNA_00628 0.27 -0.8
673,568 - CCNA_00628 0.47 -0.6
673,615 + CCNA_00628 0.59 +0.3
673,653 - CCNA_00628 0.69 -1.4
673,759 - -0.3
673,779 - -1.8
673,794 + -1.0
673,833 + -0.8
673,964 + -1.3
674,113 + -0.6
674,250 + +0.7
674,250 + +0.1
674,250 + +0.3
674,258 - -0.8
674,266 + +0.2
674,273 + +0.6
674,283 + -0.5
674,283 + -1.0
674,283 + -0.3
674,296 + -0.4
674,301 + -0.1
674,309 - +1.9
674,314 + -0.5
674,336 + -0.6
674,345 - -0.1
674,352 + -0.9
674,373 + -0.1
674,410 + +0.9
674,526 - -1.3
674,541 - -1.2
674,560 + CCNA_00629 0.10 -1.5
674,582 + CCNA_00629 0.12 -0.0
674,588 + CCNA_00629 0.12 -0.2
674,588 + CCNA_00629 0.12 -1.4
674,590 - CCNA_00629 0.12 -1.0
674,629 - CCNA_00629 0.14 -1.3
674,666 + CCNA_00629 0.16 -3.0
674,666 + CCNA_00629 0.16 +1.4
674,674 - CCNA_00629 0.16 -2.1
674,682 + CCNA_00629 0.17 -1.0
674,682 + CCNA_00629 0.17 +0.0
674,692 + CCNA_00629 0.17 -0.0
674,723 + CCNA_00629 0.19 -0.1
674,736 + CCNA_00629 0.20 -1.4
674,736 + CCNA_00629 0.20 -2.3
674,744 - CCNA_00629 0.20 +0.6
674,767 - CCNA_00629 0.21 -1.6
674,767 - CCNA_00629 0.21 -1.3
674,767 - CCNA_00629 0.21 +0.0

Or see this region's nucleotide sequence