Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23145

Experiment: root sample 4; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS23135 and ABZR87_RS23140 are separated by 24 nucleotidesABZR87_RS23140 and ABZR87_RS23145 are separated by 13 nucleotidesABZR87_RS23145 and ABZR87_RS23150 are separated by 77 nucleotidesABZR87_RS23150 and ABZR87_RS23155 are separated by 256 nucleotides ABZR87_RS23135: ABZR87_RS23135 - amidase family protein, at 1,553,302 to 1,554,825 _RS23135 ABZR87_RS23140: ABZR87_RS23140 - RidA family protein, at 1,554,850 to 1,555,206 _RS23140 ABZR87_RS23145: ABZR87_RS23145 - FAD-binding oxidoreductase, at 1,555,220 to 1,556,473 _RS23145 ABZR87_RS23150: ABZR87_RS23150 - glutathione S-transferase family protein, at 1,556,551 to 1,557,210 _RS23150 ABZR87_RS23155: ABZR87_RS23155 - polyhydroxyalkanoate depolymerase, at 1,557,467 to 1,558,822 _RS23155 Position (kb) 1555 1556 1557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1554.283 kb on + strand, within ABZR87_RS23135at 1554.283 kb on + strand, within ABZR87_RS23135at 1554.284 kb on - strand, within ABZR87_RS23135at 1554.284 kb on - strand, within ABZR87_RS23135at 1554.284 kb on - strand, within ABZR87_RS23135at 1554.284 kb on - strand, within ABZR87_RS23135at 1554.329 kb on - strand, within ABZR87_RS23135at 1554.329 kb on - strand, within ABZR87_RS23135at 1554.424 kb on + strand, within ABZR87_RS23135at 1554.425 kb on - strand, within ABZR87_RS23135at 1554.481 kb on + strand, within ABZR87_RS23135at 1554.482 kb on - strand, within ABZR87_RS23135at 1554.482 kb on - strand, within ABZR87_RS23135at 1554.517 kb on + strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.518 kb on - strand, within ABZR87_RS23135at 1554.521 kb on - strand, within ABZR87_RS23135at 1554.542 kb on - strand, within ABZR87_RS23135at 1554.542 kb on - strand, within ABZR87_RS23135at 1554.542 kb on - strand, within ABZR87_RS23135at 1554.542 kb on - strand, within ABZR87_RS23135at 1554.700 kb on - strandat 1554.700 kb on - strandat 1554.830 kb on - strandat 1554.830 kb on - strandat 1554.830 kb on - strandat 1554.859 kb on - strandat 1555.204 kb on + strandat 1555.204 kb on + strandat 1555.264 kb on - strandat 1555.379 kb on + strand, within ABZR87_RS23145at 1555.379 kb on + strand, within ABZR87_RS23145at 1555.380 kb on - strand, within ABZR87_RS23145at 1555.380 kb on - strand, within ABZR87_RS23145at 1555.386 kb on - strand, within ABZR87_RS23145at 1555.422 kb on - strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.451 kb on + strand, within ABZR87_RS23145at 1555.452 kb on - strand, within ABZR87_RS23145at 1555.544 kb on + strand, within ABZR87_RS23145at 1555.545 kb on - strand, within ABZR87_RS23145at 1555.545 kb on - strand, within ABZR87_RS23145at 1555.790 kb on + strand, within ABZR87_RS23145at 1555.792 kb on + strand, within ABZR87_RS23145at 1555.793 kb on - strand, within ABZR87_RS23145at 1555.793 kb on - strand, within ABZR87_RS23145at 1555.838 kb on + strand, within ABZR87_RS23145at 1555.847 kb on + strand, within ABZR87_RS23145at 1555.848 kb on - strand, within ABZR87_RS23145at 1555.848 kb on - strand, within ABZR87_RS23145at 1556.006 kb on + strand, within ABZR87_RS23145at 1556.036 kb on + strand, within ABZR87_RS23145at 1556.037 kb on - strand, within ABZR87_RS23145at 1556.048 kb on + strand, within ABZR87_RS23145at 1556.105 kb on + strand, within ABZR87_RS23145at 1556.106 kb on - strand, within ABZR87_RS23145at 1556.106 kb on - strand, within ABZR87_RS23145at 1556.471 kb on + strandat 1556.471 kb on + strandat 1556.472 kb on - strandat 1556.472 kb on - strandat 1556.472 kb on - strandat 1556.475 kb on + strandat 1556.501 kb on - strandat 1556.501 kb on - strandat 1556.501 kb on - strandat 1556.562 kb on + strandat 1556.648 kb on + strand, within ABZR87_RS23150at 1556.649 kb on - strand, within ABZR87_RS23150at 1556.681 kb on + strand, within ABZR87_RS23150at 1556.681 kb on + strand, within ABZR87_RS23150at 1556.681 kb on + strand, within ABZR87_RS23150at 1556.681 kb on + strand, within ABZR87_RS23150at 1556.682 kb on - strand, within ABZR87_RS23150at 1556.682 kb on - strand, within ABZR87_RS23150at 1556.682 kb on - strand, within ABZR87_RS23150at 1556.712 kb on - strand, within ABZR87_RS23150at 1556.759 kb on + strand, within ABZR87_RS23150at 1557.211 kb on - strandat 1557.407 kb on + strandat 1557.407 kb on + strandat 1557.407 kb on + strandat 1557.407 kb on + strandat 1557.407 kb on + strandat 1557.408 kb on - strandat 1557.408 kb on - strandat 1557.408 kb on - strandat 1557.408 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB
remove
1,554,283 + ABZR87_RS23135 0.64 -0.4
1,554,283 + ABZR87_RS23135 0.64 +0.2
1,554,284 - ABZR87_RS23135 0.64 -0.8
1,554,284 - ABZR87_RS23135 0.64 +0.1
1,554,284 - ABZR87_RS23135 0.64 -1.5
1,554,284 - ABZR87_RS23135 0.64 -0.1
1,554,329 - ABZR87_RS23135 0.67 -0.2
1,554,329 - ABZR87_RS23135 0.67 +0.6
1,554,424 + ABZR87_RS23135 0.74 -0.7
1,554,425 - ABZR87_RS23135 0.74 -1.2
1,554,481 + ABZR87_RS23135 0.77 -0.0
1,554,482 - ABZR87_RS23135 0.77 +0.3
1,554,482 - ABZR87_RS23135 0.77 -1.5
1,554,517 + ABZR87_RS23135 0.80 +0.6
1,554,518 - ABZR87_RS23135 0.80 -0.7
1,554,518 - ABZR87_RS23135 0.80 +0.7
1,554,518 - ABZR87_RS23135 0.80 +0.2
1,554,518 - ABZR87_RS23135 0.80 -1.1
1,554,518 - ABZR87_RS23135 0.80 +0.1
1,554,521 - ABZR87_RS23135 0.80 -1.6
1,554,542 - ABZR87_RS23135 0.81 -0.1
1,554,542 - ABZR87_RS23135 0.81 +0.2
1,554,542 - ABZR87_RS23135 0.81 -1.2
1,554,542 - ABZR87_RS23135 0.81 -0.1
1,554,700 - +0.6
1,554,700 - -1.1
1,554,830 - +0.1
1,554,830 - -0.3
1,554,830 - -1.3
1,554,859 - -0.2
1,555,204 + +0.8
1,555,204 + -0.2
1,555,264 - -0.9
1,555,379 + ABZR87_RS23145 0.13 -0.1
1,555,379 + ABZR87_RS23145 0.13 +0.8
1,555,380 - ABZR87_RS23145 0.13 -0.9
1,555,380 - ABZR87_RS23145 0.13 +1.2
1,555,386 - ABZR87_RS23145 0.13 -0.3
1,555,422 - ABZR87_RS23145 0.16 +0.1
1,555,451 + ABZR87_RS23145 0.18 -2.4
1,555,451 + ABZR87_RS23145 0.18 -0.6
1,555,451 + ABZR87_RS23145 0.18 +0.7
1,555,451 + ABZR87_RS23145 0.18 -0.3
1,555,451 + ABZR87_RS23145 0.18 -0.6
1,555,451 + ABZR87_RS23145 0.18 +0.2
1,555,452 - ABZR87_RS23145 0.19 +0.7
1,555,544 + ABZR87_RS23145 0.26 -0.2
1,555,545 - ABZR87_RS23145 0.26 +1.8
1,555,545 - ABZR87_RS23145 0.26 +0.4
1,555,790 + ABZR87_RS23145 0.45 +0.4
1,555,792 + ABZR87_RS23145 0.46 -2.3
1,555,793 - ABZR87_RS23145 0.46 +0.1
1,555,793 - ABZR87_RS23145 0.46 +0.2
1,555,838 + ABZR87_RS23145 0.49 -1.0
1,555,847 + ABZR87_RS23145 0.50 +0.5
1,555,848 - ABZR87_RS23145 0.50 -0.8
1,555,848 - ABZR87_RS23145 0.50 -0.4
1,556,006 + ABZR87_RS23145 0.63 -0.6
1,556,036 + ABZR87_RS23145 0.65 +1.4
1,556,037 - ABZR87_RS23145 0.65 +1.4
1,556,048 + ABZR87_RS23145 0.66 -0.2
1,556,105 + ABZR87_RS23145 0.71 +0.4
1,556,106 - ABZR87_RS23145 0.71 -0.9
1,556,106 - ABZR87_RS23145 0.71 -0.9
1,556,471 + -0.6
1,556,471 + +0.7
1,556,472 - -0.6
1,556,472 - +0.2
1,556,472 - +1.2
1,556,475 + +0.5
1,556,501 - -0.8
1,556,501 - -0.4
1,556,501 - +1.0
1,556,562 + -1.4
1,556,648 + ABZR87_RS23150 0.15 -0.3
1,556,649 - ABZR87_RS23150 0.15 +0.7
1,556,681 + ABZR87_RS23150 0.20 -0.3
1,556,681 + ABZR87_RS23150 0.20 -0.3
1,556,681 + ABZR87_RS23150 0.20 -0.7
1,556,681 + ABZR87_RS23150 0.20 +1.0
1,556,682 - ABZR87_RS23150 0.20 -0.4
1,556,682 - ABZR87_RS23150 0.20 -0.3
1,556,682 - ABZR87_RS23150 0.20 -0.0
1,556,712 - ABZR87_RS23150 0.24 -3.1
1,556,759 + ABZR87_RS23150 0.32 -0.5
1,557,211 - -0.3
1,557,407 + -0.0
1,557,407 + -0.9
1,557,407 + -0.7
1,557,407 + -0.4
1,557,407 + -0.6
1,557,408 - -0.5
1,557,408 - -0.3
1,557,408 - +0.5
1,557,408 - +1.1

Or see this region's nucleotide sequence