Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22685

Experiment: root sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22680 and ABZR87_RS22685 overlap by 1 nucleotidesABZR87_RS22685 and ABZR87_RS22690 are separated by 87 nucleotidesABZR87_RS22690 and ABZR87_RS22695 are separated by 20 nucleotides ABZR87_RS22680: ABZR87_RS22680 - NAD-dependent epimerase/dehydratase family protein, at 1,446,984 to 1,447,967 _RS22680 ABZR87_RS22685: ABZR87_RS22685 - glycine C-acetyltransferase, at 1,447,967 to 1,449,202 _RS22685 ABZR87_RS22690: ABZR87_RS22690 - XRE family transcriptional regulator, at 1,449,290 to 1,449,886 _RS22690 ABZR87_RS22695: ABZR87_RS22695 - MATE family efflux transporter, at 1,449,907 to 1,451,262 _RS22695 Position (kb) 1447 1448 1449 1450Strain fitness (log2 ratio) -2 -1 0 1 2at 1446.986 kb on - strandat 1447.100 kb on - strand, within ABZR87_RS22680at 1447.144 kb on + strand, within ABZR87_RS22680at 1447.203 kb on - strand, within ABZR87_RS22680at 1447.203 kb on - strand, within ABZR87_RS22680at 1447.225 kb on + strand, within ABZR87_RS22680at 1447.225 kb on + strand, within ABZR87_RS22680at 1447.225 kb on + strand, within ABZR87_RS22680at 1447.226 kb on - strand, within ABZR87_RS22680at 1447.226 kb on - strand, within ABZR87_RS22680at 1447.226 kb on - strand, within ABZR87_RS22680at 1447.241 kb on + strand, within ABZR87_RS22680at 1447.241 kb on + strand, within ABZR87_RS22680at 1447.241 kb on + strand, within ABZR87_RS22680at 1447.241 kb on + strand, within ABZR87_RS22680at 1447.242 kb on - strand, within ABZR87_RS22680at 1447.242 kb on - strand, within ABZR87_RS22680at 1447.242 kb on - strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.299 kb on - strand, within ABZR87_RS22680at 1447.299 kb on - strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.342 kb on + strand, within ABZR87_RS22680at 1447.342 kb on + strand, within ABZR87_RS22680at 1447.343 kb on - strand, within ABZR87_RS22680at 1447.384 kb on + strand, within ABZR87_RS22680at 1447.385 kb on - strand, within ABZR87_RS22680at 1447.385 kb on - strand, within ABZR87_RS22680at 1447.385 kb on - strand, within ABZR87_RS22680at 1447.417 kb on + strand, within ABZR87_RS22680at 1447.436 kb on - strand, within ABZR87_RS22680at 1447.436 kb on - strand, within ABZR87_RS22680at 1447.474 kb on + strand, within ABZR87_RS22680at 1447.516 kb on + strand, within ABZR87_RS22680at 1447.517 kb on - strand, within ABZR87_RS22680at 1447.661 kb on + strand, within ABZR87_RS22680at 1447.661 kb on + strand, within ABZR87_RS22680at 1447.661 kb on + strand, within ABZR87_RS22680at 1447.661 kb on + strand, within ABZR87_RS22680at 1447.662 kb on - strand, within ABZR87_RS22680at 1447.662 kb on - strand, within ABZR87_RS22680at 1447.726 kb on + strand, within ABZR87_RS22680at 1447.726 kb on + strand, within ABZR87_RS22680at 1447.726 kb on + strand, within ABZR87_RS22680at 1447.727 kb on - strand, within ABZR87_RS22680at 1447.727 kb on - strand, within ABZR87_RS22680at 1447.727 kb on - strand, within ABZR87_RS22680at 1447.727 kb on - strand, within ABZR87_RS22680at 1447.737 kb on - strand, within ABZR87_RS22680at 1447.737 kb on - strand, within ABZR87_RS22680at 1448.109 kb on + strand, within ABZR87_RS22685at 1448.110 kb on - strand, within ABZR87_RS22685at 1448.110 kb on - strand, within ABZR87_RS22685at 1448.110 kb on - strand, within ABZR87_RS22685at 1448.163 kb on + strand, within ABZR87_RS22685at 1448.163 kb on + strand, within ABZR87_RS22685at 1448.164 kb on - strand, within ABZR87_RS22685at 1448.164 kb on - strand, within ABZR87_RS22685at 1448.164 kb on - strand, within ABZR87_RS22685at 1448.164 kb on - strand, within ABZR87_RS22685at 1448.238 kb on + strand, within ABZR87_RS22685at 1448.239 kb on - strand, within ABZR87_RS22685at 1448.349 kb on + strand, within ABZR87_RS22685at 1448.349 kb on + strand, within ABZR87_RS22685at 1448.447 kb on - strand, within ABZR87_RS22685at 1448.703 kb on + strand, within ABZR87_RS22685at 1448.703 kb on + strand, within ABZR87_RS22685at 1448.703 kb on + strand, within ABZR87_RS22685at 1448.704 kb on - strand, within ABZR87_RS22685at 1448.838 kb on + strand, within ABZR87_RS22685at 1449.006 kb on + strand, within ABZR87_RS22685at 1449.006 kb on + strand, within ABZR87_RS22685at 1449.007 kb on - strand, within ABZR87_RS22685at 1449.007 kb on - strand, within ABZR87_RS22685at 1449.007 kb on - strand, within ABZR87_RS22685at 1449.096 kb on + strandat 1449.096 kb on + strandat 1449.097 kb on - strandat 1449.144 kb on + strandat 1449.145 kb on - strandat 1449.217 kb on - strandat 1449.217 kb on - strandat 1449.217 kb on - strandat 1449.281 kb on + strandat 1449.281 kb on + strandat 1449.656 kb on + strand, within ABZR87_RS22690at 1449.656 kb on + strand, within ABZR87_RS22690at 1449.657 kb on - strand, within ABZR87_RS22690at 1449.657 kb on - strand, within ABZR87_RS22690at 1449.657 kb on - strand, within ABZR87_RS22690at 1449.657 kb on - strand, within ABZR87_RS22690at 1449.884 kb on + strandat 1449.884 kb on + strandat 1449.885 kb on - strandat 1449.909 kb on - strandat 1449.909 kb on - strandat 1449.909 kb on - strandat 1449.909 kb on - strandat 1450.021 kb on + strandat 1450.138 kb on + strand, within ABZR87_RS22695

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB
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1,446,986 - -0.2
1,447,100 - ABZR87_RS22680 0.12 -0.1
1,447,144 + ABZR87_RS22680 0.16 -0.5
1,447,203 - ABZR87_RS22680 0.22 -0.8
1,447,203 - ABZR87_RS22680 0.22 -1.5
1,447,225 + ABZR87_RS22680 0.24 +0.2
1,447,225 + ABZR87_RS22680 0.24 -1.8
1,447,225 + ABZR87_RS22680 0.24 +0.4
1,447,226 - ABZR87_RS22680 0.25 +0.9
1,447,226 - ABZR87_RS22680 0.25 -0.3
1,447,226 - ABZR87_RS22680 0.25 -1.2
1,447,241 + ABZR87_RS22680 0.26 +0.3
1,447,241 + ABZR87_RS22680 0.26 -0.2
1,447,241 + ABZR87_RS22680 0.26 -0.6
1,447,241 + ABZR87_RS22680 0.26 -1.5
1,447,242 - ABZR87_RS22680 0.26 +0.5
1,447,242 - ABZR87_RS22680 0.26 -0.8
1,447,242 - ABZR87_RS22680 0.26 -0.2
1,447,298 + ABZR87_RS22680 0.32 -0.8
1,447,298 + ABZR87_RS22680 0.32 +0.5
1,447,298 + ABZR87_RS22680 0.32 +1.2
1,447,298 + ABZR87_RS22680 0.32 -1.6
1,447,298 + ABZR87_RS22680 0.32 -2.3
1,447,298 + ABZR87_RS22680 0.32 -1.8
1,447,299 - ABZR87_RS22680 0.32 -0.7
1,447,299 - ABZR87_RS22680 0.32 -0.9
1,447,300 + ABZR87_RS22680 0.32 -0.4
1,447,300 + ABZR87_RS22680 0.32 +0.2
1,447,300 + ABZR87_RS22680 0.32 +0.5
1,447,300 + ABZR87_RS22680 0.32 +0.8
1,447,300 + ABZR87_RS22680 0.32 +0.9
1,447,300 + ABZR87_RS22680 0.32 +1.1
1,447,300 + ABZR87_RS22680 0.32 -1.2
1,447,300 + ABZR87_RS22680 0.32 -0.1
1,447,300 + ABZR87_RS22680 0.32 -0.1
1,447,300 + ABZR87_RS22680 0.32 -0.5
1,447,300 + ABZR87_RS22680 0.32 +2.2
1,447,300 + ABZR87_RS22680 0.32 -0.8
1,447,300 + ABZR87_RS22680 0.32 +0.7
1,447,300 + ABZR87_RS22680 0.32 +0.2
1,447,300 + ABZR87_RS22680 0.32 -0.7
1,447,300 + ABZR87_RS22680 0.32 +0.3
1,447,300 + ABZR87_RS22680 0.32 +0.7
1,447,301 - ABZR87_RS22680 0.32 +1.2
1,447,301 - ABZR87_RS22680 0.32 +0.4
1,447,301 - ABZR87_RS22680 0.32 +0.3
1,447,301 - ABZR87_RS22680 0.32 +0.1
1,447,301 - ABZR87_RS22680 0.32 -1.5
1,447,301 - ABZR87_RS22680 0.32 -0.7
1,447,301 - ABZR87_RS22680 0.32 +0.2
1,447,301 - ABZR87_RS22680 0.32 -0.9
1,447,301 - ABZR87_RS22680 0.32 -0.4
1,447,301 - ABZR87_RS22680 0.32 -0.2
1,447,301 - ABZR87_RS22680 0.32 -0.8
1,447,301 - ABZR87_RS22680 0.32 -0.8
1,447,301 - ABZR87_RS22680 0.32 +0.9
1,447,301 - ABZR87_RS22680 0.32 +0.1
1,447,301 - ABZR87_RS22680 0.32 -0.0
1,447,301 - ABZR87_RS22680 0.32 -0.3
1,447,301 - ABZR87_RS22680 0.32 -1.5
1,447,301 - ABZR87_RS22680 0.32 -0.6
1,447,301 - ABZR87_RS22680 0.32 -0.1
1,447,301 - ABZR87_RS22680 0.32 -0.2
1,447,301 - ABZR87_RS22680 0.32 -0.1
1,447,301 - ABZR87_RS22680 0.32 +1.0
1,447,301 - ABZR87_RS22680 0.32 -0.7
1,447,301 - ABZR87_RS22680 0.32 +0.0
1,447,301 - ABZR87_RS22680 0.32 -0.3
1,447,301 - ABZR87_RS22680 0.32 +0.3
1,447,301 - ABZR87_RS22680 0.32 +1.0
1,447,301 - ABZR87_RS22680 0.32 +0.8
1,447,301 - ABZR87_RS22680 0.32 +0.3
1,447,340 + ABZR87_RS22680 0.36 -0.7
1,447,340 + ABZR87_RS22680 0.36 +0.7
1,447,340 + ABZR87_RS22680 0.36 +0.0
1,447,340 + ABZR87_RS22680 0.36 -0.9
1,447,340 + ABZR87_RS22680 0.36 +0.6
1,447,341 - ABZR87_RS22680 0.36 +0.4
1,447,341 - ABZR87_RS22680 0.36 -0.9
1,447,341 - ABZR87_RS22680 0.36 +0.2
1,447,341 - ABZR87_RS22680 0.36 -1.1
1,447,341 - ABZR87_RS22680 0.36 -0.5
1,447,341 - ABZR87_RS22680 0.36 -0.7
1,447,342 + ABZR87_RS22680 0.36 +0.4
1,447,342 + ABZR87_RS22680 0.36 -0.4
1,447,343 - ABZR87_RS22680 0.36 +1.2
1,447,384 + ABZR87_RS22680 0.41 -0.9
1,447,385 - ABZR87_RS22680 0.41 -0.6
1,447,385 - ABZR87_RS22680 0.41 +0.3
1,447,385 - ABZR87_RS22680 0.41 -0.3
1,447,417 + ABZR87_RS22680 0.44 +0.7
1,447,436 - ABZR87_RS22680 0.46 +1.6
1,447,436 - ABZR87_RS22680 0.46 -0.5
1,447,474 + ABZR87_RS22680 0.50 +0.0
1,447,516 + ABZR87_RS22680 0.54 +0.4
1,447,517 - ABZR87_RS22680 0.54 +0.0
1,447,661 + ABZR87_RS22680 0.69 +1.4
1,447,661 + ABZR87_RS22680 0.69 +0.0
1,447,661 + ABZR87_RS22680 0.69 -0.1
1,447,661 + ABZR87_RS22680 0.69 +0.6
1,447,662 - ABZR87_RS22680 0.69 -1.6
1,447,662 - ABZR87_RS22680 0.69 -1.4
1,447,726 + ABZR87_RS22680 0.75 -0.1
1,447,726 + ABZR87_RS22680 0.75 -0.0
1,447,726 + ABZR87_RS22680 0.75 -1.3
1,447,727 - ABZR87_RS22680 0.76 +0.0
1,447,727 - ABZR87_RS22680 0.76 -0.2
1,447,727 - ABZR87_RS22680 0.76 -1.2
1,447,727 - ABZR87_RS22680 0.76 +0.3
1,447,737 - ABZR87_RS22680 0.77 +0.7
1,447,737 - ABZR87_RS22680 0.77 -1.1
1,448,109 + ABZR87_RS22685 0.11 -0.6
1,448,110 - ABZR87_RS22685 0.12 -1.4
1,448,110 - ABZR87_RS22685 0.12 -0.8
1,448,110 - ABZR87_RS22685 0.12 -0.6
1,448,163 + ABZR87_RS22685 0.16 -0.0
1,448,163 + ABZR87_RS22685 0.16 -0.1
1,448,164 - ABZR87_RS22685 0.16 -0.3
1,448,164 - ABZR87_RS22685 0.16 -0.1
1,448,164 - ABZR87_RS22685 0.16 -0.8
1,448,164 - ABZR87_RS22685 0.16 +0.1
1,448,238 + ABZR87_RS22685 0.22 -0.1
1,448,239 - ABZR87_RS22685 0.22 +0.2
1,448,349 + ABZR87_RS22685 0.31 +0.7
1,448,349 + ABZR87_RS22685 0.31 -0.2
1,448,447 - ABZR87_RS22685 0.39 -0.9
1,448,703 + ABZR87_RS22685 0.60 +0.1
1,448,703 + ABZR87_RS22685 0.60 -1.7
1,448,703 + ABZR87_RS22685 0.60 +0.9
1,448,704 - ABZR87_RS22685 0.60 +0.3
1,448,838 + ABZR87_RS22685 0.70 -2.4
1,449,006 + ABZR87_RS22685 0.84 +0.9
1,449,006 + ABZR87_RS22685 0.84 -0.6
1,449,007 - ABZR87_RS22685 0.84 -0.4
1,449,007 - ABZR87_RS22685 0.84 -0.2
1,449,007 - ABZR87_RS22685 0.84 -0.9
1,449,096 + -0.5
1,449,096 + +0.7
1,449,097 - +0.3
1,449,144 + -2.5
1,449,145 - +1.3
1,449,217 - +1.8
1,449,217 - -0.9
1,449,217 - -0.8
1,449,281 + -0.2
1,449,281 + +0.2
1,449,656 + ABZR87_RS22690 0.61 -1.7
1,449,656 + ABZR87_RS22690 0.61 -1.4
1,449,657 - ABZR87_RS22690 0.61 -0.9
1,449,657 - ABZR87_RS22690 0.61 +1.4
1,449,657 - ABZR87_RS22690 0.61 +0.2
1,449,657 - ABZR87_RS22690 0.61 -0.7
1,449,884 + -0.8
1,449,884 + +0.8
1,449,885 - +0.1
1,449,909 - -1.7
1,449,909 - -0.9
1,449,909 - -0.9
1,449,909 - +0.2
1,450,021 + -0.4
1,450,138 + ABZR87_RS22695 0.17 -0.4

Or see this region's nucleotide sequence