Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21510 and ABZR87_RS21515 are separated by 2 nucleotides ABZR87_RS21515 and ABZR87_RS21520 are separated by 28 nucleotides ABZR87_RS21520 and ABZR87_RS21525 are separated by 45 nucleotides
ABZR87_RS21510: ABZR87_RS21510 - ABC transporter ATP-binding protein, at 1,208,123 to 1,209,760
_RS21510
ABZR87_RS21515: ABZR87_RS21515 - ABC transporter permease, at 1,209,763 to 1,210,677
_RS21515
ABZR87_RS21520: ABZR87_RS21520 - ABC transporter permease, at 1,210,706 to 1,211,662
_RS21520
ABZR87_RS21525: ABZR87_RS21525 - ABC transporter substrate-binding protein, at 1,211,708 to 1,213,327
_RS21525
Position (kb) 1210
1211
1212 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1209.992 kb on + strand, within ABZR87_RS21515 at 1209.992 kb on + strand, within ABZR87_RS21515 at 1209.993 kb on - strand, within ABZR87_RS21515 at 1209.993 kb on - strand, within ABZR87_RS21515 at 1210.064 kb on + strand, within ABZR87_RS21515 at 1210.064 kb on + strand, within ABZR87_RS21515 at 1210.064 kb on + strand, within ABZR87_RS21515 at 1210.065 kb on - strand, within ABZR87_RS21515 at 1210.065 kb on - strand, within ABZR87_RS21515 at 1210.065 kb on - strand, within ABZR87_RS21515 at 1210.103 kb on + strand, within ABZR87_RS21515 at 1210.164 kb on - strand, within ABZR87_RS21515 at 1210.164 kb on - strand, within ABZR87_RS21515 at 1210.164 kb on - strand, within ABZR87_RS21515 at 1210.324 kb on + strand, within ABZR87_RS21515 at 1210.380 kb on - strand, within ABZR87_RS21515 at 1210.380 kb on - strand, within ABZR87_RS21515 at 1210.425 kb on - strand, within ABZR87_RS21515 at 1210.425 kb on - strand, within ABZR87_RS21515 at 1210.653 kb on + strand at 1210.653 kb on + strand at 1210.695 kb on + strand at 1210.696 kb on - strand at 1210.773 kb on + strand at 1210.774 kb on - strand at 1210.829 kb on + strand, within ABZR87_RS21520 at 1210.863 kb on + strand, within ABZR87_RS21520 at 1210.863 kb on + strand, within ABZR87_RS21520 at 1210.906 kb on - strand, within ABZR87_RS21520 at 1211.016 kb on + strand, within ABZR87_RS21520 at 1211.016 kb on + strand, within ABZR87_RS21520 at 1211.017 kb on - strand, within ABZR87_RS21520 at 1211.017 kb on - strand, within ABZR87_RS21520 at 1211.017 kb on - strand, within ABZR87_RS21520 at 1211.151 kb on + strand, within ABZR87_RS21520 at 1211.151 kb on + strand, within ABZR87_RS21520 at 1211.564 kb on + strand, within ABZR87_RS21520 at 1211.565 kb on - strand, within ABZR87_RS21520 at 1211.645 kb on - strand at 1211.695 kb on + strand at 1211.743 kb on - strand at 1211.871 kb on + strand, within ABZR87_RS21525 at 1211.871 kb on + strand, within ABZR87_RS21525 at 1211.871 kb on + strand, within ABZR87_RS21525 at 1211.872 kb on - strand, within ABZR87_RS21525 at 1211.872 kb on - strand, within ABZR87_RS21525 at 1212.153 kb on + strand, within ABZR87_RS21525 at 1212.154 kb on - strand, within ABZR87_RS21525 at 1212.154 kb on - strand, within ABZR87_RS21525 at 1212.154 kb on - strand, within ABZR87_RS21525 at 1212.264 kb on + strand, within ABZR87_RS21525 at 1212.264 kb on + strand, within ABZR87_RS21525 at 1212.264 kb on + strand, within ABZR87_RS21525 at 1212.265 kb on - strand, within ABZR87_RS21525 at 1212.265 kb on - strand, within ABZR87_RS21525 at 1212.312 kb on + strand, within ABZR87_RS21525 at 1212.313 kb on - strand, within ABZR87_RS21525 at 1212.378 kb on + strand, within ABZR87_RS21525 at 1212.426 kb on + strand, within ABZR87_RS21525 at 1212.619 kb on + strand, within ABZR87_RS21525
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 1,209,992 + ABZR87_RS21515 0.25 +0.1 1,209,992 + ABZR87_RS21515 0.25 +0.2 1,209,993 - ABZR87_RS21515 0.25 -1.4 1,209,993 - ABZR87_RS21515 0.25 -0.3 1,210,064 + ABZR87_RS21515 0.33 +0.1 1,210,064 + ABZR87_RS21515 0.33 -0.5 1,210,064 + ABZR87_RS21515 0.33 +0.2 1,210,065 - ABZR87_RS21515 0.33 -0.4 1,210,065 - ABZR87_RS21515 0.33 -1.5 1,210,065 - ABZR87_RS21515 0.33 -0.3 1,210,103 + ABZR87_RS21515 0.37 -0.2 1,210,164 - ABZR87_RS21515 0.44 -1.0 1,210,164 - ABZR87_RS21515 0.44 +1.0 1,210,164 - ABZR87_RS21515 0.44 -0.1 1,210,324 + ABZR87_RS21515 0.61 +1.3 1,210,380 - ABZR87_RS21515 0.67 -0.7 1,210,380 - ABZR87_RS21515 0.67 -0.4 1,210,425 - ABZR87_RS21515 0.72 -1.0 1,210,425 - ABZR87_RS21515 0.72 -1.1 1,210,653 + +0.1 1,210,653 + -0.4 1,210,695 + +0.2 1,210,696 - -0.5 1,210,773 + -0.2 1,210,774 - -0.4 1,210,829 + ABZR87_RS21520 0.13 -1.2 1,210,863 + ABZR87_RS21520 0.16 +2.0 1,210,863 + ABZR87_RS21520 0.16 -0.2 1,210,906 - ABZR87_RS21520 0.21 -1.2 1,211,016 + ABZR87_RS21520 0.32 -2.4 1,211,016 + ABZR87_RS21520 0.32 -0.3 1,211,017 - ABZR87_RS21520 0.32 -0.6 1,211,017 - ABZR87_RS21520 0.32 +1.1 1,211,017 - ABZR87_RS21520 0.32 -0.5 1,211,151 + ABZR87_RS21520 0.46 -0.1 1,211,151 + ABZR87_RS21520 0.46 -0.5 1,211,564 + ABZR87_RS21520 0.90 +0.5 1,211,565 - ABZR87_RS21520 0.90 -2.0 1,211,645 - -1.0 1,211,695 + -0.7 1,211,743 - -0.3 1,211,871 + ABZR87_RS21525 0.10 -1.8 1,211,871 + ABZR87_RS21525 0.10 +0.3 1,211,871 + ABZR87_RS21525 0.10 +1.2 1,211,872 - ABZR87_RS21525 0.10 -2.0 1,211,872 - ABZR87_RS21525 0.10 -0.4 1,212,153 + ABZR87_RS21525 0.27 -0.6 1,212,154 - ABZR87_RS21525 0.28 +1.3 1,212,154 - ABZR87_RS21525 0.28 -0.4 1,212,154 - ABZR87_RS21525 0.28 +0.3 1,212,264 + ABZR87_RS21525 0.34 -0.3 1,212,264 + ABZR87_RS21525 0.34 +0.2 1,212,264 + ABZR87_RS21525 0.34 -0.3 1,212,265 - ABZR87_RS21525 0.34 +0.5 1,212,265 - ABZR87_RS21525 0.34 +0.7 1,212,312 + ABZR87_RS21525 0.37 +1.1 1,212,313 - ABZR87_RS21525 0.37 +0.3 1,212,378 + ABZR87_RS21525 0.41 -0.6 1,212,426 + ABZR87_RS21525 0.44 -1.0 1,212,619 + ABZR87_RS21525 0.56 -1.9
Or see this region's nucleotide sequence