Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21335

Experiment: root sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21330 and ABZR87_RS21335 are separated by 117 nucleotidesABZR87_RS21335 and ABZR87_RS21340 are separated by 105 nucleotides ABZR87_RS21330: ABZR87_RS21330 - chemotaxis protein, at 1,166,754 to 1,167,707 _RS21330 ABZR87_RS21335: ABZR87_RS21335 - LysR family transcriptional regulator, at 1,167,825 to 1,168,730 _RS21335 ABZR87_RS21340: ABZR87_RS21340 - SDR family oxidoreductase, at 1,168,836 to 1,169,897 _RS21340 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1167.070 kb on + strand, within ABZR87_RS21330at 1167.070 kb on + strand, within ABZR87_RS21330at 1167.071 kb on - strand, within ABZR87_RS21330at 1167.071 kb on - strand, within ABZR87_RS21330at 1167.071 kb on - strand, within ABZR87_RS21330at 1167.302 kb on + strand, within ABZR87_RS21330at 1167.303 kb on - strand, within ABZR87_RS21330at 1167.303 kb on - strand, within ABZR87_RS21330at 1167.406 kb on + strand, within ABZR87_RS21330at 1167.406 kb on + strand, within ABZR87_RS21330at 1167.512 kb on + strand, within ABZR87_RS21330at 1167.581 kb on + strand, within ABZR87_RS21330at 1167.582 kb on - strand, within ABZR87_RS21330at 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.736 kb on - strandat 1167.736 kb on - strandat 1167.736 kb on - strandat 1167.746 kb on - strandat 1167.826 kb on + strandat 1167.826 kb on + strandat 1167.904 kb on + strandat 1167.904 kb on + strandat 1167.904 kb on + strandat 1167.904 kb on + strandat 1167.904 kb on + strandat 1167.905 kb on - strandat 1167.905 kb on - strandat 1167.905 kb on - strandat 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.987 kb on + strand, within ABZR87_RS21335at 1167.987 kb on + strand, within ABZR87_RS21335at 1167.988 kb on - strand, within ABZR87_RS21335at 1167.988 kb on - strand, within ABZR87_RS21335at 1167.988 kb on - strand, within ABZR87_RS21335at 1168.109 kb on + strand, within ABZR87_RS21335at 1168.109 kb on + strand, within ABZR87_RS21335at 1168.138 kb on + strand, within ABZR87_RS21335at 1168.139 kb on - strand, within ABZR87_RS21335at 1168.207 kb on + strand, within ABZR87_RS21335at 1168.208 kb on - strand, within ABZR87_RS21335at 1168.208 kb on - strand, within ABZR87_RS21335at 1168.520 kb on - strand, within ABZR87_RS21335at 1168.748 kb on + strandat 1168.750 kb on + strandat 1168.795 kb on + strandat 1168.796 kb on - strandat 1168.796 kb on - strandat 1169.059 kb on - strand, within ABZR87_RS21340at 1169.059 kb on - strand, within ABZR87_RS21340at 1169.187 kb on + strand, within ABZR87_RS21340at 1169.187 kb on + strand, within ABZR87_RS21340at 1169.187 kb on + strand, within ABZR87_RS21340at 1169.188 kb on - strand, within ABZR87_RS21340at 1169.188 kb on - strand, within ABZR87_RS21340at 1169.188 kb on - strand, within ABZR87_RS21340at 1169.188 kb on - strand, within ABZR87_RS21340at 1169.196 kb on + strand, within ABZR87_RS21340at 1169.197 kb on - strand, within ABZR87_RS21340at 1169.400 kb on + strand, within ABZR87_RS21340at 1169.400 kb on + strand, within ABZR87_RS21340at 1169.400 kb on + strand, within ABZR87_RS21340at 1169.401 kb on - strand, within ABZR87_RS21340at 1169.401 kb on - strand, within ABZR87_RS21340at 1169.401 kb on - strand, within ABZR87_RS21340at 1169.401 kb on - strand, within ABZR87_RS21340at 1169.401 kb on - strand, within ABZR87_RS21340at 1169.460 kb on + strand, within ABZR87_RS21340at 1169.460 kb on + strand, within ABZR87_RS21340

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB
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1,167,070 + ABZR87_RS21330 0.33 +1.0
1,167,070 + ABZR87_RS21330 0.33 +0.5
1,167,071 - ABZR87_RS21330 0.33 -0.0
1,167,071 - ABZR87_RS21330 0.33 -0.4
1,167,071 - ABZR87_RS21330 0.33 -2.0
1,167,302 + ABZR87_RS21330 0.57 -0.4
1,167,303 - ABZR87_RS21330 0.58 -1.6
1,167,303 - ABZR87_RS21330 0.58 +1.0
1,167,406 + ABZR87_RS21330 0.68 +1.1
1,167,406 + ABZR87_RS21330 0.68 -0.3
1,167,512 + ABZR87_RS21330 0.79 -0.4
1,167,581 + ABZR87_RS21330 0.87 +0.0
1,167,582 - ABZR87_RS21330 0.87 -2.8
1,167,735 + -0.1
1,167,735 + -0.6
1,167,735 + +2.3
1,167,735 + -0.1
1,167,735 + +0.6
1,167,735 + +0.5
1,167,736 - -1.3
1,167,736 - +0.7
1,167,736 - -1.1
1,167,746 - -1.4
1,167,826 + -0.4
1,167,826 + -0.1
1,167,904 + +0.1
1,167,904 + -0.8
1,167,904 + -0.9
1,167,904 + -2.8
1,167,904 + -1.2
1,167,905 - -0.4
1,167,905 - +1.1
1,167,905 - +0.0
1,167,940 + ABZR87_RS21335 0.13 -0.6
1,167,940 + ABZR87_RS21335 0.13 +0.0
1,167,940 + ABZR87_RS21335 0.13 +0.6
1,167,940 + ABZR87_RS21335 0.13 -0.2
1,167,940 + ABZR87_RS21335 0.13 -0.4
1,167,940 + ABZR87_RS21335 0.13 -0.2
1,167,940 + ABZR87_RS21335 0.13 +0.3
1,167,941 - ABZR87_RS21335 0.13 +0.9
1,167,941 - ABZR87_RS21335 0.13 +0.8
1,167,941 - ABZR87_RS21335 0.13 +1.8
1,167,941 - ABZR87_RS21335 0.13 -0.2
1,167,941 - ABZR87_RS21335 0.13 -0.4
1,167,941 - ABZR87_RS21335 0.13 -1.1
1,167,941 - ABZR87_RS21335 0.13 -0.6
1,167,941 - ABZR87_RS21335 0.13 -1.0
1,167,987 + ABZR87_RS21335 0.18 +0.5
1,167,987 + ABZR87_RS21335 0.18 +0.7
1,167,988 - ABZR87_RS21335 0.18 +0.7
1,167,988 - ABZR87_RS21335 0.18 -2.0
1,167,988 - ABZR87_RS21335 0.18 -1.4
1,168,109 + ABZR87_RS21335 0.31 +0.3
1,168,109 + ABZR87_RS21335 0.31 +0.6
1,168,138 + ABZR87_RS21335 0.35 -1.0
1,168,139 - ABZR87_RS21335 0.35 -0.4
1,168,207 + ABZR87_RS21335 0.42 +0.4
1,168,208 - ABZR87_RS21335 0.42 -2.2
1,168,208 - ABZR87_RS21335 0.42 +0.9
1,168,520 - ABZR87_RS21335 0.77 -0.8
1,168,748 + +1.6
1,168,750 + -0.5
1,168,795 + -0.8
1,168,796 - +0.3
1,168,796 - +1.8
1,169,059 - ABZR87_RS21340 0.21 -0.6
1,169,059 - ABZR87_RS21340 0.21 -0.3
1,169,187 + ABZR87_RS21340 0.33 +0.4
1,169,187 + ABZR87_RS21340 0.33 -0.6
1,169,187 + ABZR87_RS21340 0.33 +4.3
1,169,188 - ABZR87_RS21340 0.33 +0.6
1,169,188 - ABZR87_RS21340 0.33 -1.5
1,169,188 - ABZR87_RS21340 0.33 +1.0
1,169,188 - ABZR87_RS21340 0.33 +0.5
1,169,196 + ABZR87_RS21340 0.34 -0.5
1,169,197 - ABZR87_RS21340 0.34 +0.9
1,169,400 + ABZR87_RS21340 0.53 -0.1
1,169,400 + ABZR87_RS21340 0.53 +0.1
1,169,400 + ABZR87_RS21340 0.53 +0.3
1,169,401 - ABZR87_RS21340 0.53 +0.5
1,169,401 - ABZR87_RS21340 0.53 +1.7
1,169,401 - ABZR87_RS21340 0.53 +1.0
1,169,401 - ABZR87_RS21340 0.53 +1.5
1,169,401 - ABZR87_RS21340 0.53 -2.3
1,169,460 + ABZR87_RS21340 0.59 +0.4
1,169,460 + ABZR87_RS21340 0.59 -1.0

Or see this region's nucleotide sequence