Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20235 and ABZR87_RS20240 overlap by 8 nucleotides ABZR87_RS20240 and ABZR87_RS20245 are separated by 34 nucleotides ABZR87_RS20245 and ABZR87_RS20250 are separated by 481 nucleotides
ABZR87_RS20235: ABZR87_RS20235 - type VI secretion system contractile sheath large subunit, at 926,831 to 928,315
_RS20235
ABZR87_RS20240: ABZR87_RS20240 - type VI secretion system contractile sheath small subunit, at 928,308 to 928,820
_RS20240
ABZR87_RS20245: ABZR87_RS20245 - hypothetical protein, at 928,855 to 929,442
_RS20245
ABZR87_RS20250: ABZR87_RS20250 - type VI secretion system lipoprotein TssJ, at 929,924 to 930,517
_RS20250
Position (kb) 928
929
930 Strain fitness (log2 ratio) -1
0
1
2 at 927.886 kb on - strand, within ABZR87_RS20235 at 927.886 kb on - strand, within ABZR87_RS20235 at 927.886 kb on - strand, within ABZR87_RS20235 at 928.014 kb on + strand, within ABZR87_RS20235 at 928.014 kb on + strand, within ABZR87_RS20235 at 928.015 kb on - strand, within ABZR87_RS20235 at 928.133 kb on + strand, within ABZR87_RS20235 at 928.133 kb on + strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.800 kb on + strand at 928.800 kb on + strand at 928.801 kb on - strand at 929.219 kb on + strand, within ABZR87_RS20245 at 929.220 kb on - strand, within ABZR87_RS20245 at 929.300 kb on + strand, within ABZR87_RS20245 at 929.301 kb on - strand, within ABZR87_RS20245 at 929.301 kb on - strand, within ABZR87_RS20245 at 929.467 kb on - strand at 929.467 kb on - strand at 929.552 kb on + strand at 929.553 kb on - strand at 929.553 kb on - strand at 929.553 kb on - strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.582 kb on + strand at 929.582 kb on + strand at 929.582 kb on + strand at 929.620 kb on + strand at 929.621 kb on - strand at 929.623 kb on + strand at 929.645 kb on + strand at 929.645 kb on + strand at 929.652 kb on + strand at 929.652 kb on + strand at 930.143 kb on + strand, within ABZR87_RS20250 at 930.183 kb on - strand, within ABZR87_RS20250
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 927,886 - ABZR87_RS20235 0.71 +1.1 927,886 - ABZR87_RS20235 0.71 +0.5 927,886 - ABZR87_RS20235 0.71 -1.3 928,014 + ABZR87_RS20235 0.80 +0.3 928,014 + ABZR87_RS20235 0.80 -0.8 928,015 - ABZR87_RS20235 0.80 -0.1 928,133 + ABZR87_RS20235 0.88 +0.4 928,133 + ABZR87_RS20235 0.88 -0.5 928,134 - ABZR87_RS20235 0.88 -0.4 928,134 - ABZR87_RS20235 0.88 +0.2 928,134 - ABZR87_RS20235 0.88 -0.5 928,753 + ABZR87_RS20240 0.87 +2.3 928,753 + ABZR87_RS20240 0.87 -0.9 928,753 + ABZR87_RS20240 0.87 -0.3 928,753 + ABZR87_RS20240 0.87 +0.8 928,754 - ABZR87_RS20240 0.87 +0.8 928,754 - ABZR87_RS20240 0.87 -0.0 928,754 - ABZR87_RS20240 0.87 +2.0 928,754 - ABZR87_RS20240 0.87 -0.3 928,754 - ABZR87_RS20240 0.87 -0.5 928,754 - ABZR87_RS20240 0.87 +0.1 928,754 - ABZR87_RS20240 0.87 +1.1 928,800 + -1.1 928,800 + +0.0 928,801 - +0.4 929,219 + ABZR87_RS20245 0.62 +1.4 929,220 - ABZR87_RS20245 0.62 -1.0 929,300 + ABZR87_RS20245 0.76 -0.1 929,301 - ABZR87_RS20245 0.76 -1.3 929,301 - ABZR87_RS20245 0.76 -0.8 929,467 - -0.4 929,467 - -0.1 929,552 + +0.3 929,553 - +1.3 929,553 - +0.3 929,553 - +0.2 929,579 + -0.4 929,579 + -0.5 929,579 + -0.6 929,579 + -0.0 929,579 + -0.9 929,580 - -1.4 929,580 - -0.3 929,580 - -0.5 929,580 - -0.3 929,580 - -0.3 929,582 + -0.5 929,582 + -0.4 929,582 + -0.2 929,620 + +0.5 929,621 - -0.5 929,623 + +0.5 929,645 + -0.4 929,645 + +0.1 929,652 + -0.7 929,652 + +0.4 930,143 + ABZR87_RS20250 0.37 -0.3 930,183 - ABZR87_RS20250 0.44 -0.8
Or see this region's nucleotide sequence