Experiment: root sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20085 and ABZR87_RS20090 are separated by 80 nucleotides ABZR87_RS20090 and ABZR87_RS20095 are separated by 448 nucleotides ABZR87_RS20095 and ABZR87_RS20100 are separated by 244 nucleotides
ABZR87_RS20085: ABZR87_RS20085 - zinc-dependent alcohol dehydrogenase family protein, at 880,291 to 881,301
_RS20085
ABZR87_RS20090: ABZR87_RS20090 - universal stress protein, at 881,382 to 881,837
_RS20090
ABZR87_RS20095: ABZR87_RS20095 - class II glutamine amidotransferase, at 882,286 to 883,179
_RS20095
ABZR87_RS20100: ABZR87_RS20100 - excinuclease ABC subunit UvrA, at 883,424 to 889,273
_RS20100
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 881.333 kb on + strand at 881.333 kb on + strand at 881.333 kb on + strand at 881.334 kb on - strand at 881.334 kb on - strand at 881.342 kb on + strand at 881.343 kb on - strand at 881.356 kb on + strand at 881.356 kb on + strand at 881.357 kb on - strand at 881.385 kb on + strand at 881.385 kb on + strand at 881.386 kb on - strand at 881.386 kb on - strand at 881.386 kb on - strand at 881.386 kb on - strand at 881.386 kb on - strand at 881.427 kb on + strand at 881.427 kb on + strand at 881.427 kb on + strand at 881.548 kb on - strand, within ABZR87_RS20090 at 881.568 kb on + strand, within ABZR87_RS20090 at 881.568 kb on + strand, within ABZR87_RS20090 at 881.568 kb on + strand, within ABZR87_RS20090 at 881.569 kb on - strand, within ABZR87_RS20090 at 881.569 kb on - strand, within ABZR87_RS20090 at 881.569 kb on - strand, within ABZR87_RS20090 at 881.835 kb on + strand at 881.836 kb on - strand at 882.088 kb on - strand at 882.158 kb on - strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.271 kb on + strand at 882.271 kb on + strand at 882.271 kb on + strand at 882.271 kb on + strand at 882.271 kb on + strand at 882.272 kb on - strand at 882.272 kb on - strand at 882.272 kb on - strand at 882.273 kb on + strand at 882.273 kb on + strand at 882.273 kb on + strand at 882.273 kb on + strand at 882.274 kb on - strand at 882.304 kb on + strand at 882.304 kb on + strand at 882.304 kb on + strand at 882.304 kb on + strand at 882.304 kb on + strand at 882.425 kb on + strand, within ABZR87_RS20095 at 882.425 kb on + strand, within ABZR87_RS20095 at 882.426 kb on - strand, within ABZR87_RS20095 at 882.426 kb on - strand, within ABZR87_RS20095 at 882.442 kb on + strand, within ABZR87_RS20095 at 882.643 kb on + strand, within ABZR87_RS20095 at 882.643 kb on + strand, within ABZR87_RS20095 at 882.644 kb on - strand, within ABZR87_RS20095 at 882.832 kb on + strand, within ABZR87_RS20095 at 882.843 kb on + strand, within ABZR87_RS20095 at 882.843 kb on + strand, within ABZR87_RS20095 at 882.843 kb on + strand, within ABZR87_RS20095 at 882.843 kb on + strand, within ABZR87_RS20095 at 882.843 kb on + strand, within ABZR87_RS20095 at 882.844 kb on - strand, within ABZR87_RS20095 at 882.844 kb on - strand, within ABZR87_RS20095 at 882.844 kb on - strand, within ABZR87_RS20095 at 882.844 kb on - strand, within ABZR87_RS20095 at 882.844 kb on - strand, within ABZR87_RS20095 at 882.844 kb on - strand, within ABZR87_RS20095 at 882.955 kb on + strand, within ABZR87_RS20095 at 882.956 kb on - strand, within ABZR87_RS20095 at 882.956 kb on - strand, within ABZR87_RS20095 at 883.159 kb on + strand at 883.200 kb on + strand at 883.200 kb on + strand at 883.200 kb on + strand at 883.200 kb on + strand at 883.200 kb on + strand at 883.201 kb on - strand at 883.201 kb on - strand at 883.201 kb on - strand at 883.201 kb on - strand at 883.201 kb on - strand at 883.299 kb on + strand at 883.318 kb on + strand at 883.319 kb on - strand at 883.319 kb on - strand at 883.319 kb on - strand at 883.319 kb on - strand at 883.326 kb on + strand at 883.327 kb on - strand at 883.327 kb on - strand at 883.368 kb on + strand at 883.368 kb on + strand at 883.368 kb on + strand at 883.368 kb on + strand at 883.368 kb on + strand at 883.368 kb on + strand at 883.368 kb on + strand at 883.368 kb on + strand at 883.369 kb on - strand at 883.369 kb on - strand at 883.369 kb on - strand at 883.369 kb on - strand at 883.396 kb on + strand at 883.396 kb on + strand at 883.397 kb on - strand at 883.565 kb on + strand at 883.587 kb on - strand at 883.608 kb on - strand at 883.608 kb on - strand at 883.835 kb on + strand at 883.835 kb on + strand at 883.836 kb on - strand at 883.955 kb on + strand at 883.955 kb on + strand at 883.958 kb on - strand at 883.958 kb on - strand at 883.958 kb on - strand at 883.958 kb on - strand at 883.958 kb on - strand at 884.118 kb on - strand, within ABZR87_RS20100 at 884.118 kb on - strand, within ABZR87_RS20100 at 884.118 kb on - strand, within ABZR87_RS20100
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 4; outgrowth in LB remove 881,333 + -0.8 881,333 + -0.2 881,333 + +0.8 881,334 - +0.8 881,334 - +0.9 881,342 + +0.3 881,343 - -0.7 881,356 + -0.6 881,356 + -1.2 881,357 - +0.4 881,385 + +0.4 881,385 + -0.8 881,386 - -0.5 881,386 - -0.3 881,386 - -0.4 881,386 - -1.2 881,386 - -0.6 881,427 + +0.2 881,427 + +0.9 881,427 + -0.5 881,548 - ABZR87_RS20090 0.36 -1.5 881,568 + ABZR87_RS20090 0.41 -1.4 881,568 + ABZR87_RS20090 0.41 -0.2 881,568 + ABZR87_RS20090 0.41 -0.8 881,569 - ABZR87_RS20090 0.41 +0.9 881,569 - ABZR87_RS20090 0.41 -0.6 881,569 - ABZR87_RS20090 0.41 -0.1 881,835 + +0.8 881,836 - +0.6 882,088 - -0.0 882,158 - -2.5 882,247 + +0.9 882,247 + -0.9 882,247 + -0.4 882,247 + +0.3 882,247 + +0.6 882,247 + -0.1 882,247 + -0.9 882,247 + +1.5 882,248 - -1.0 882,248 - -0.8 882,248 - +1.2 882,248 - +0.3 882,248 - -0.5 882,248 - -0.9 882,271 + -0.6 882,271 + -0.5 882,271 + +0.0 882,271 + +0.8 882,271 + -0.6 882,272 - +0.7 882,272 - -0.0 882,272 - +0.4 882,273 + +4.2 882,273 + +0.3 882,273 + -0.1 882,273 + -0.2 882,274 - -0.8 882,304 + +1.4 882,304 + +0.7 882,304 + +0.8 882,304 + -0.6 882,304 + -0.4 882,425 + ABZR87_RS20095 0.16 -0.5 882,425 + ABZR87_RS20095 0.16 -1.1 882,426 - ABZR87_RS20095 0.16 -0.6 882,426 - ABZR87_RS20095 0.16 +2.0 882,442 + ABZR87_RS20095 0.17 -0.6 882,643 + ABZR87_RS20095 0.40 -0.5 882,643 + ABZR87_RS20095 0.40 +0.9 882,644 - ABZR87_RS20095 0.40 +0.3 882,832 + ABZR87_RS20095 0.61 +3.0 882,843 + ABZR87_RS20095 0.62 +0.7 882,843 + ABZR87_RS20095 0.62 -1.4 882,843 + ABZR87_RS20095 0.62 +1.4 882,843 + ABZR87_RS20095 0.62 -1.8 882,843 + ABZR87_RS20095 0.62 -0.2 882,844 - ABZR87_RS20095 0.62 +0.8 882,844 - ABZR87_RS20095 0.62 +0.1 882,844 - ABZR87_RS20095 0.62 +1.9 882,844 - ABZR87_RS20095 0.62 -0.4 882,844 - ABZR87_RS20095 0.62 -0.9 882,844 - ABZR87_RS20095 0.62 +0.4 882,955 + ABZR87_RS20095 0.75 +2.7 882,956 - ABZR87_RS20095 0.75 -0.1 882,956 - ABZR87_RS20095 0.75 +0.2 883,159 + +0.0 883,200 + -1.3 883,200 + +3.6 883,200 + -1.3 883,200 + +1.6 883,200 + -1.1 883,201 - +1.3 883,201 - +0.5 883,201 - -0.4 883,201 - +1.1 883,201 - -0.7 883,299 + -1.0 883,318 + +0.7 883,319 - -0.6 883,319 - -0.6 883,319 - +1.7 883,319 - +0.9 883,326 + -0.1 883,327 - +2.3 883,327 - -0.6 883,368 + -0.9 883,368 + +0.5 883,368 + +0.1 883,368 + +1.0 883,368 + +0.1 883,368 + -0.3 883,368 + +0.5 883,368 + +0.7 883,369 - +0.2 883,369 - +1.1 883,369 - -0.1 883,369 - -0.1 883,396 + +1.4 883,396 + +0.4 883,397 - +0.8 883,565 + -0.8 883,587 - +0.8 883,608 - +0.3 883,608 - +0.7 883,835 + +0.4 883,835 + +0.7 883,836 - -0.7 883,955 + +1.2 883,955 + -0.7 883,958 - -0.1 883,958 - +0.7 883,958 - +0.4 883,958 - -1.8 883,958 - +4.8 884,118 - ABZR87_RS20100 0.12 +2.3 884,118 - ABZR87_RS20100 0.12 -2.1 884,118 - ABZR87_RS20100 0.12 -0.9
Or see this region's nucleotide sequence